ccdc51 (ccdc51)


Basic Information

Item Value
gene id ccdc51
gene name ccdc51
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 14613763 ~ 14615894 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932763.2
ACCCGGATGTGGAAGGCTTAACATCTGCCTGAACTAAAAGTTATCTGTCATGTACGAAAGCTTGACTTTTGCATAGCTGcctatccatctgtctatctatatatatagcacttttaatacaCTATTTAGGTTCAGTTTTAATAGACGGCAACTGACGGAATAAAAGCCAATAGCTGGTTGCAGGTTTGATATGTGTGCTCGGTAAAGGAAAGTTCAATGAGCTACAGAGGGAGCTGTGTGCTACAAAGGAGGAATGGCACTTGCTTCTACCGCCTCCAGATCTCTGGCAGAATCCAGTGCAATGCCTTCTCCATCAACAGAACCTTCTGTTCTCAAAAAAGTCCACCAGATAAGCCCGTGGCCGTGCAGGAGAAGACCTCGGTGGCCCTGAAGAACGTGGCCGAGGTTGGGAAACAGTGGGGACAGAATACTTTGAAAACTGTGACAGCTACTGCCAATTACTGGTGGGAAAAGTATGAAGAGTTTGTCGGCCTTAATGAGGTTCGAGACGCTCAGTCCAAGGTTACAGAGGCTGAGAAAGCTTTCATGGTGGCCAGGGGAATGGTTCGTGAGGCTCATATGAGTTTGGAGGCTCTTCAGGTGAGGCTTAAGGAGGTTAGAGATCGCCTGGATCGAGTGTCGAGAGAGGAGGCACATTATCTTGAATTAGCAACGCTTGAACACAAGTTACTTCAGGAAGAACGGCGCCTCAAAACGGCTTACGAAAACGCAGAGGGAGGAGAGCGGGAAAAATTTGCCCTATTCTCCGCTGGCGTGCGCGAGAGTCACGAGAAAGAGCGTGCGCGGGCCGAACGCACCAAGAACTGGTCcatcattggctctgtactggGCGCCATTATTGGTGTCATGGGGTCCACTTACATCAACAGGGTGCGCCTTCAGGAGTTGAAAAGCTTGCTTCTGGAGGCTCAGAAGGGACCAGTGAGCCTACAAGAAGCTATTAAAGTCCAAGCCATTTCTCACAAGAGCCAGCAAGAGGAACTCCGAGGCCTCATAGACACACTTAAGTTAGCCATTACTAATAGAGCAGATGAAAAAACTATATCTGTTCCCTTAGCAGCCCAATCTGCAACACCACCATCAAAACCCAGCATGTCAGAAGAAGCCATTAAAGAGATGCTTCTGCACAGCCAGAGAGCTCAGTCACTCGTGGAAGATCTCAAGCCACAGATGGAGCAGATCAGACAGAATTTAGGGAAGATGGCGACTGAGCTTCTGGCGGTAAAGAAATCTATCTCAGATCGTCCTGCggaaaaatcattcattcagaCAAAAGATACGCCACTTTTAGTGTGTGAAACAGAGAGCATCATCCAAGGCCTGGACCAGACTGAGAAAAGACTGGAGGCTCAGATTAACAGGTCTACTCTGTACAACACTATTCTGACTTACACAGCATTTGCCTTATCTATGCCAGTGCTGTATGTTATCTTCAAAGGTACATGATGAATTTGTCTAGATTGTGGCGTGCACTTAAGGGGCCATCGTTTGTAACAGAAGCGACCTCAAATTTTACAGAGTACTGTAGGACCTGTATCATGGAATCATGCACTGATGAGTAAAGAATTAAAATGTTGAACATGAA

Function

symbol description
ccdc51 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC51 (coiled-coil domain containing 51).

NR:

description
LOW QUALITY PROTEIN: coiled-coil domain-containing protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932763.2 True 1606 mRNA 0.47 4 14613763 14615894

Neighbor

gene id symbol gene type direction distance location
LOC113538112 LOC108255148 coding upstream 3599 14599257 ~ 14610164 (+)
LOC113537860 bcdin3d coding upstream 34415 14576334 ~ 14579348 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 coding upstream 40336 14532710 ~ 14573427 (+)
smarcd1 smarcd1,LOC107694342 coding upstream 100028 14495263 ~ 14513735 (+)
gls2b gls2b,LOC108255189,LOC108431573 coding upstream 481756 14114476 ~ 14132007 (+)
mcm2 mcm2,LOC107718478 coding downstream 1094 14616988 ~ 14628607 (+)
podxl2 podxl2 coding downstream 14636 14630530 ~ 14661741 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding downstream 58596 14674490 ~ 14680861 (+)
slc6a6b slc6a6,slc6a6b,LOC107719944,LOC107562730,LOC107676359 coding downstream 149292 14765186 ~ 14789849 (+)
cand2 cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311 coding downstream 396971 15012865 ~ 15023674 (+)
G307976 NA non-coding upstream 15151 14598393 ~ 14598612 (+)
LOC117599878 NA non-coding upstream 22942 14583567 ~ 14590821 (+)
G307971 NA non-coding upstream 24531 14589025 ~ 14589232 (+)
G307588 NA non-coding upstream 465318 14148141 ~ 14148445 (+)
G307281 NA non-coding upstream 516977 14096270 ~ 14096786 (+)
G307997 NA non-coding downstream 84103 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding downstream 144937 14760831 ~ 14763174 (+)
G308018 NA non-coding downstream 183079 14798973 ~ 14800142 (+)
LOC113537967 NA non-coding downstream 777715 15393609 ~ 15407641 (+)
G308404 NA non-coding downstream 796205 15412099 ~ 15413822 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 88787 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 136946 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 920851 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2151227 12457601 ~ 12462536 (+)
G306103 NA other upstream 3097950 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1140996 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1873467 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2645085 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 4071503 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4471131 19087025 ~ 19087806 (+)

Expression


Co-expression Network