si:dkey-42i9.4 (LOC108254831,LOC108269908,LOC108431510,LOC108281067)


Basic Information

Item Value
gene id si:dkey-42i9.4
gene name LOC108254831,LOC108269908,LOC108431510,LOC108281067
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13669420 ~ 13671305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932764.2
TCCTTATTCCATGCCCTATGTAGCGCGCTTATAGAGCAATTTTGGAGCTATTCGGGATACAGGCGCTGTTGAGCCTATTTTGGTCAGTGCTgtggaagtgaagtgaagtttGGTCGAAAGAAAGTCGATTAATTTGGAATTTGGGTTTGATGTAATGTTGAGATTGCGATtagaaaagagtgagaaagtCCATGTGAATTAGTTTTGTCGAGTCTGGAGTAGCTTATGAAAATATTTCGCGATGAAAGCCGAGGTGGCCACAGCTGTGAACTTTATCACCACATTATTGAGAGGAACAGGACTTCTGTCTGAAGACCAACTCCAGCACTTCAGCCATTCTCTGGAAGAGGCTTTAGGAGaGCATTATGAGCACCACTGGTTCCCTGACGCACCGTTTAGAGGTTCAGGATATCGCTGTATCCGGATCAATCACAGGATGGACCCGCTGGTAGGGAAGGCTGCTTACACCATCGGTCTCAGCAGGGAGCAGCTTTTCTCCCTCTTACCCAGCGAGCTTACAATGTGGGTCGACCCCTACGAAGTGTCCTATCGTATAGGAGAGGACGGGTCCATATGTGTACTGTACGAGTCCACACCGCCACCAGAGACTCATCTGAAGTCTGTGGACAGCTGCAAAGAGAAACTGAGAATTGGTCACTCGAGCCCATCAAAGTCCTTCACTGTGATGACTGTCTCCAGCTAATGTCTCTGCACATCTGGCCcacatttgttttatgttttataatgaCGATTTTTAATGACTGAGGAAATTGGATATATTTTGATTCAGTGCTTGATTTTAACTCCTGtaaaattttgtaaatgttttatacatttcGATTAAAGATGATGcttcaatttt

Function

NR:

description
protein BTG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932764.2 True 862 mRNA 0.44 3 13669420 13671305

Neighbor

gene id symbol gene type direction distance location
si:dkey-42i9.6 NA coding upstream 20155 13632105 ~ 13649265 (+)
nuf2 nuf2 coding upstream 40629 13617009 ~ 13628791 (+)
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding upstream 62969 13589033 ~ 13606451 (+)
isy1 isy1,LOC108254962,LOC108431508,LOC107700632 coding upstream 82449 13579360 ~ 13586971 (+)
LOC113537916 LOC108254963 coding upstream 91061 13569089 ~ 13578359 (+)
ecm2 ecm2,LOC107658384,LOC107586919 coding downstream 34416 13705721 ~ 13721720 (+)
aspn aspn coding downstream 54555 13725860 ~ 13733282 (+)
omd omd coding downstream 73699 13745004 ~ 13748733 (+)
ogna ogn coding downstream 82663 13753968 ~ 13757523 (+)
nol8 nol8 coding downstream 105191 13776496 ~ 13792919 (+)
G307161 NA non-coding upstream 145366 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 167589 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 318740 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 335175 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 269121 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 332303 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 343857 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 380530 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 424965 14096270 ~ 14096786 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1206884 12457601 ~ 12462536 (+)
G306103 NA other upstream 2153607 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2188320 11480669 ~ 11481100 (+)
G305869 NA other upstream 2343060 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2353984 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 3049 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 508478 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 843287 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2085585 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2818056 16489361 ~ 16501684 (+)

Expression


Co-expression Network