slc6a11b (slc6a11,LOC107750026,LOC107697565,LOC107561801)


Basic Information

Item Value
gene id slc6a11b
gene name slc6a11,LOC107750026,LOC107697565,LOC107561801
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12975527 ~ 13011059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932776.2
AGTGCACGGAGTGCAGTGTGTGGTCAGAGTAAGTGTGAGCTAAATGAGTGTGGTGGTGTTAAGGAGGATGCGAGTCCCGTTACCACATGGCTCTTTTCCAACGAGAGACGTTTTGAGATCAGACACAGGAACCAGAGCTGAGCAACAGCAAGAACAGCAAATCCGTCCATCTTTCGGCATCAGACTCAGCCGAGAgctttctacacacactcccCCGTCTCCTGCCACACAGACCTTCATTCCTATTTATCCTTCTTTTATTCTGGTATAAGGGATTTGAATTGAGGCTTTGGGGTTGAGACTGATAACAGGTGATCAGCCAAGACAGGATTTACTGCACGACCTTGTATTGGCTGTTGGGAGGTGATGACAGCCGACAAGCCCGGGCCCATGGTGAACGGGAGGCACGCGGAGGACGCCGAGGCTCCGCGCGCGAGCCCCGTGCACGAGCGCGGCCAGTGGGGCAGCAAGGTGGAGTTCATGCTCTCGGTGGCCGGAGAGATCATCGGACTCGGCAACGTGTGGAGGTTCCCATATCTCTGCTACAAGAACGGAGGAGGTGCTTTCTTTGTGCCTTATGTCATCTTCTTTGTGTGCTGCGGTATCCCCGTATTCTTCCTGGAGACAGCACTAGGCCAGTATACCAGCGAAGGAGGAATCACATGCTGGAGAAAAGTGTGTCCACTTTTTGAGGgtATTGGTTATGCAACTCAGGTCATCGAGGCGCATCTGAACGTGTATTATGTGATTATTTTGGCATGGGCAATCTTCTACCTGTTTAACTGCTTCACCACCGAGCTGCCCTGGGCCTCCTGTGGCCATTACTGGAACACAGaaaactgtgtgGATTTCAACAATGCCAGTGTGGCAAACCTCAGCAACCCCTTTGCCACCTCACCAGTCATGGAGTTTTGGGAGCGCCGTGTCCTCAGTATATCCGGTGGAATTGAGCAGGTTGGGAAGCTGCGCTGGGAACTCGCTCTGTGCCTTGCAGTGGCTTGGGTCATATGTTATTTCTGCATATGGAAAGGTCCTAAATCAACTGGAAAGGTGGTATACGTTACTGCAACCTTCCCCTATTTCATGTTGGTGATCCTGCTCATTCGAGGGATCACACTTCCTGGTGCAGCAGATGGAATCAAGTTCTACCTTTACCCTGACATCTCTCGGCTCTCAGACCCTCAGGTGTGGGTGGATGCCGGAACTCAGATCTTCTTCTCATATGCCATCTGTCTGGGATGTCTGACTGCTCTTGGGAGCTATAACAGTTATAATAACAACTGTTACAGggaCTGCGTCATGCTATGCTGCTTGAACAGTGGCACAAGTTTTGTGGCAGGATTTGCCATCTTCTCAGTGTTAGGTTTCATGGCTTATGAACAGAATGTGCCAATTGAAGCTGTGGCTGAATCAGGACCAGGTCTGGCTTTTATTGCATATCCAAAAGCTGTGACCATGATGCCATGGTCACCTCTGTGGGCGTGCCTCTTCTTCATGATGCTCATCTTCCTTGGCCTGGACAGTCAAtttgtgtgtgtagagagtctTGTGACTGCCGTGGTGGACATGTACCCCAAAACCTTCAGAGTGGGATACCGTCGAGAGCTCTTGATCTTAGGAATGTCTGTGGCTTCTTATATTTTGGGTCTAACCATGTTGACAGAGGGTGGCATGTATGTGTTCCAGTTGTTTGATTCTTATGCTGCCAGTGGGATGTGTTTGCTTTTTGTGGCCATCTTTGAGTCCATCTGCATCGGCTGGGTCTATGGCAGTGACAAGTTTTATTTGAACATTGAGGACATGATTGGTTACAAGCCCATATTTTTCATCAAGTGGTGCTGGAAGATCCTAACCCCTGGCATCTGTTCAGGaattttcctcttcttcttgaTCAAGTACAAGCCCCTGAAATACAACAATGTGTACACTTATCCAGACTGGGGTTACGGCATAGGATGGACGATGGCAATGTCCTCGATGATCTGCATCCCTCTGGGCATTATAGTCCAGATCTGGAAAACAGAAGGAACCTTCATGGAGAGAATCAAGAAGCTGACCACCCCGAGCTCTGATCTGAGGATGAGAGGCCACCTCAGTGCAAAGAGTCCCTATGCCATCAATGATGCTGATGCTAAAATGAGGGTGGATGGCAAAATCTCCACCATTACGGAGAAGGAGACACATTTCTAAAGCTGTACCTACCAAGACACGGTCACATCCACCAAGACTGTAAAGGAAAAGAACTTAAATCTTGCCTCGATTTTTGTTGAAGAGAAATGATTATCACATTCTTAGTCTTGCCCTTTTTGCACAAATGATTAACGCATCCATTACGAGTTAACTTCACGATAAAAAAGTCTCATATTCAAGTTTATCAAAAATCTAGTCTGTTAAAGGTGATCTTgtactttgtgtatttttgtgacACTAGTGATGACTGTACCTAGAGTGAAGCCAAGGTAAATATGTGCTGTAAAGTGTTTCTGCATTTTGACTCTTGGCAATGGCATTATTCTCTACAGAATGTTCCTAATGTGTAGAAGATCCATTTTATGACCATTCCAAATGTTACAGGTATGTTTGTAGAGGATTCTTTATTTGATGGATAAAAATGATGGTACATTTGGTTGGCATTGGCCTCCTCGCAGGACGAGCATGACTTAGCACACTCAGTGTCATTTTATACAGCATGGACTCAATGCCACTTCACAACGGTTAAACTGAGTTTAATCCAAGGTGACAGACTGAACACAATTCatcatttttgtgatttctgaaCTATTTTCAGATAGCTTGACTCTCTAATGCTGTAGTGGgcacttcacacactctcactgttaTACAAGCAGTCTGTTGACAAGCTGGTGGCCCAAGGGCAAttgttcaggttttttttgATGAAGTATGAGAttaaggtcaggtttttttgcAGTACACATTCATTATATGGATACCATTATAGATAAATGTGGCTTGAAATTGTTGGTGTTATGCAAGATTGGGCCTTAAGATAGGGAAAGATTAAAGGTAAGTAGGATTTAACAGGGATATGCAGTAAAAGGGATTAATTGAGTCCTAATATTTTGGACTGGATAACACACTCGCTGCTATTATCACTTTTACCATGTGATTTGTAGAGTGAAATGTGCCCTTAAATTGGTAGTTGTCATTAGACTGACCTAATAtgctaaatatatttctaaaactATGATGGTAGATTTAGCTAGTTTATTGAATGTGTTTCATAGATTAAACCCAGTGTTGATTAAGAAAGAGAACTGACAAGAGTGTTAtatcagggcacccagctactTCGATACTGTAGATGTCCAGTTGTCTTGGATCCACTGTGAACCCTGTGCACATGCATGTGATCTTTGGTATGGTCTAATTCATCATGACACTGTCACCTCTGTTTGTGCAAGTaaactgttttactgttttaataGCCTAACTTTTGAGAttgatgtatatttttacatttggttAGGGCATTTTTGTGTGTTCTATTTCTTgagatgaacaaaaaaaaaa

Function

symbol description
slc6a11 Enables monocarboxylic acid transmembrane transporter activity. Involved in monocarboxylic acid transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in GABA-ergic synapse and neuron projection. Predicted to be integral component of postsynaptic membrane and integral component of presynaptic membrane.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 3

GO: NA

KEGG:

id description
K05044 SLC6A11, GAT3; solute carrier family 6 (neurotransmitter transporter, GABA) member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932776.2 True 3534 mRNA 0.44 15 12975527 13011059

Neighbor

gene id symbol gene type direction distance location
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 16421 12789492 ~ 12959106 (+)
iars1 iars coding upstream 200383 12694286 ~ 12775144 (+)
sarnp sarnp coding upstream 348919 12608353 ~ 12626608 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding upstream 369474 12599069 ~ 12606053 (+)
pmela pmel coding upstream 379730 12585125 ~ 12595797 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding downstream 48924 13059983 ~ 13073758 (+)
hrh1 hrh1 coding downstream 129511 13140570 ~ 13161692 (+)
atg7 atg7,LOC107697561,LOC107750032 coding downstream 156096 13167155 ~ 13279101 (+)
syn2b syn2,LOC107758022 coding downstream 347865 13358924 ~ 13425482 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 429600 13440659 ~ 13476589 (+)
G306756 NA non-coding upstream 70686 12904208 ~ 12904841 (+)
G306744 NA non-coding upstream 177545 12797748 ~ 12797982 (+)
G306503 NA non-coding upstream 401768 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 527153 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 679798 12295369 ~ 12295729 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 185416 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 277730 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 320628 13331687 ~ 13334245 (+)
G306961 NA non-coding downstream 321747 13332806 ~ 13333248 (+)
G307079 NA non-coding downstream 339394 13350453 ~ 13350680 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 512991 12457601 ~ 12462536 (+)
G306103 NA other upstream 1459714 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1494427 11480669 ~ 11481100 (+)
G305869 NA other upstream 1649167 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1660091 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 663295 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1168724 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1503533 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2745831 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3478302 16489361 ~ 16501684 (+)

Expression


Co-expression Network