slc6a1b (slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027)


Basic Information

Item Value
gene id slc6a1b
gene name slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13059983 ~ 13073758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932778.2
AAGATGCTCCAGTGTGATGTCAGCGCTGGAGATGTTGGACTTGGCGAGATTTCACCCTCACTTTTTCATTGGAGCTCAGCAGATGAAGGTGGagtatcatcatcaccatcatcttcctcttctctcctgcCTGATGCTTTAGTTGGTGTTGCTGCTGCTTCAGGATCCATCTCTGTCTGGGCTTTTTCTCATTTTGGACATCAGGATAAACATTTTTTCATCTCTTTGCTTTATGGAAACCCTTGGTTTTGCTTACCTTCAGGAGGAATAAGCAGACGGAAAAGGTCTTGCAGGACAATCCGGTTAAATATTTCCGCCGCCCGAGTCGAGTTTGTTTTTGGGGGCACGGAGCCGCGAAGCTGCTGTCCGCGTGGAGCGGTGCCGAAGTCTCGCGTCCGGGCGCCAGGAGCTCCGCCAAGCCGCGCGACATGGCCACGAACGGCGCCAAAGCCTCAGACGGACACGTCCTAACAGAGGTCAACGCGGCGCCCGCGGCCAACGACAAGCCCAAGACTCTGGTAGTCAAAGTGCAGAAGAAAGAGCTTCCGGACCGAGAAACGTGGGCCGGCAAGTTCGACTTTCTGCTCTCGTGCGTCGGTTACGCCATCGGGCTCGGAAATGTCTGGAGGTTCCCTTATCTGTGCGGCAAAAACGGCGGAGgGGCCTTCTTGATTCCATATTTTCTGACACTCATATTCGCTGGCGTACCGTTGTTCTTTCTTGAGTGTGCTCTCGGTCAGTACACCTCCATCGGTGGCCTTGGAGTGTGGAAACTGGCTCCTATGTTCAAAGGTGTCGGCCTGGCGGCAGCAGTTCTGTCCTTCTGGCTTAACATCTACTATATTGTCATCATCGCCTGGGCCATTTATTATCTATACAATTCCTTCACCACAGAGCTCCCATGGAAATCCTGCAACAACCCCTGGAATACAGAGCAATGCTTTTCCAACTACAGCTTGGCAAACACGTCTAACATGACCAGCGCCGTCGTGGAGTTTTGGGAACGGAATGTGCATCAGCTTACGGATGGTCTGGAAAAACCAGGGGAGATCAGAGTGCCACTGGCAATAACACTGGCCATCGCATGGGTCCTGGTCTACTTTTGCATCTGGAAAGGTGTGGGCTGGACAGGAAAGGTGGTCTATTTTTCAGCCACATATCCGTACTTCATGCTGCTTATCCTGTTCTTCCGTGGAGTTACGCTGCCTGGAGCTAAAGAGGGCATTTTGTTCTATGTCACACCTAACTTTGAAAAGCTGAAGGAGTCAGAAGTGTGGCTTGATGCTGCCACTCAGATTTTCTTCTCCTATGGACTCGGCCTCGGGTCTCTGATTGCGCTCGGGAGCTACAACCCCTTCAACAACAACGTTTACAAGGACTCCATCATTGTATGCTGCATCAACTCCTTCACCAGCATGTTTGCtggatttgtcattttttccattGTGGGCTTCATGGCTCACATCACAAAGAGGTCTATTGCAGATGTAGCTGCATCAGGTCCAGGCTTGGCATTTTTAGCTTACCCAGAGGCTGTTACTCAGCTGCCCATTTCACCACTTTGGGCAATTTTGTTCTTTTCCATGCTGCTTATGCTTGGAATTGACAGTCAGTTCTGTACAGTAGAGGGTTTCATCACTGCCTTGGTGGACGAGTTTCCCCGCTTATTGCGAGGACGACGAGAAATCTTCATTGCTGTTGTCTGCCTTGTGTCTTATATCATCGGGCTGTCAAACATCACGCAGggtGGCCTCTATGTGTTCAAGCTTTTCGATTACTACTCTGCCAGTGGAATGTGTCTGCTCTTCCTGGTGTTCTTTGAATGCATCTCCATATCCTGGTTCTATGGTGTCAATAAGTTCTATGGAAATATTGAAGAGATGATTGGATACAAACCTTGCATTTGGTGGAAATTGTGTTGGGTGGTGTTTACACCTTTGATTGTGGCTGGTGTGTTCCTGTTCAGTGCGATCCAGATGGTTCCCCTGACCATGAATAATTATGTGTTCCCAAAGTGGGGACAGGGTGTAGGCTGGTGTATGGCCTTGTCTTCTATGGTCCTCATTCCTGGTTACATGGGCTACATGTTCCTAACGTTGAAAGGCTCCTACAAAGAGCGTCTCCGGATAATGATTCAGCCTACGGTTCTGGTCAGAAGCCAAGAGAATGGGCCCGAGCAGCAACCTGAGAGTGTGAATGCAGCCAACGATGAGGCATACATCTAAAACCCTGGACATTGCAGGCCCTTCGgaacaaaaatgaaaccaagtaaTCAAGGTTGAACGCTAGCAGGGACTTCTATGTCTAAATTATAATCACCTACCTCCAGGGGAAAAATGTATCCAACCTGATTACAACTGTTTGAAaattttaatgtgtgtatgaaaaaaaaaaacaacgatcCAGCGATGATCTAGTGCTAGTTCGTATTGCATATGCAAGATATTAGTCTTTCCAAAACGTAACATTGTAACAATTACTGTTTGGATCCCAATGTGATTGAACACTACTGTGCTAATTCGATATATATTTACCTTATGTAATTATGTTAAGATATTGTATAAAGATCTTAGAATAGAATCAAATTGTATTTGATTGTATTTGAagacatataaaaaaatgaatgaagttaGTTGgcaaaatatgacaaatatgatGAACTGCATCATGGCCAGTTTCGAGCAGTGGCCATTATGGGAGCATATAGCTGGTCCTCATGGCCTGTGTAAAAGGTTATATAAAGAGACTCCTACTGTTTTTATTATCCCAAACACGTACTCAAGCTGGATTAGTTTTACCTGGCTTGGTAATGTAAATTAAAGGTGCGGTCAGCGATTTTTACACCAGAACACTTGTCATATTTGGTAAAGTTCTTGTCAAATTCCAGCAGCTGTCATGTTCTGTAAATGGGAGAAACAAATTAACGTCGATATTCAACCAATCAGGATAAGAGGTGGTTCTACATTCGTATCAGTCATGCTGTCCTTCAATTAAGACAGCTCCCCCACTTTCATGTGCATTCAGGCACTCTAGCATGTGTTATGGGTGCATGGCTTTGGAGTTAAATCTGAAATAACTCTTTGGATTTCGATTTACAAAACAGCTAGCTCTAGCCAACTTCCACCAAAATCGCTGACTATACTTTTAGATTGCCAACAAGATCCATGATTCAGGCTAAATCCATTTTTCCTCGTATGACAATTCCAGAGCAAATAAGCTTCAGTGTTTCAGCAAACATGGTGATCTCTCTGTGAAAGTAGTCCTTTCTGAACTAACAGTAATGTAATAAGAAAACCTGATAATAGTCAGTAACACGTCTTTTAACTGAAAATACAAAACGTCCAATGTTACGTAATACTGATGTTTACATATGTGACAAATTATCTACATTATCTAGATTCTTGTACAGATCCAGTCAGATTGCTCAAAAAATACATGACAGGTAAAACATATCCAGCTATAACAGGGCGTAAGGGTTTACAACACCCCTGTAACCCTTCAGTCCCAAAATAAGCACAAACCAGTATAGATTTGAGTTTACAGACGTCACAAACAGCGATGAATTATCTGTCACACAAACAGAGTCATCTTACACATAAGAGAGActgttagttttttattttttaagaactAAATAACTTTGTATGTTTTTTCAATCGtttttagtctgtttttttatgtaagCGTGAGAAGGACCAAAATCGCGTTCACATGGAAATCATTTGCATATGAAAGTGTTTCGCGTCACACTGTGTCCTAGAAAGTGCAGGGTACAAAAACGACACAAAATGCATAATGTTTGGCAGTAATAGCCTCTGATTCCACTGTTCAGTCCTGCTTATTTGCATGCCACTCCTCAGGAACAATGGTGGAAGTGACCAAATTTGACTCTTTCCCCCCCCTCACCCGAATCAAATGGATTAGAGCTGTGAATGGCCTTCAGCAAATAATCAGACTGTGAGCAGAAGCCATAGTGTGTCTCCAGAGTTTGTGAGGCCATTTTGGGGAAAGGCACCTTTAAAGaaaccagcaaaaaaaatcacaggctAGTTGTAGTcagttaaaattatttaaatatctatATTGTCTGCATATTTGGTCTTCTTTAGAGAACTGCCTTGGCAATAATTAACTAGATAAAGTGTATGTGAATGCTGTTATGTATATGACTGGTTTAACCCCTGTTATTATAACTACACCGGTTAAAAGCACGAAGCTTTAAAACCACAAGCTCCAGCGGTTGTTTTTCAAAAAGGGACAGAGTTAGTTTGCTTCTATGGCAGCTACATGTGACAGGGACGTGGATAAACGACTCAGCAAAGATATCGAACTAAAATCGTGCAATCTGTTAGCGTTGCGTACGTTTTGTACAAAGTTCTCATTCAGCAGATTTCTCTCTGTAAACctgtactgtgtaaaagtatCTGTGAATGTCCATATGACCACTGAGGTTTTGTCTAAATGTTAAAGACTcttattatttactgttttcTGCAATAATACTCTCAGAAACTAAAGCACATAGTatttctgaaatgtaaaaaaaaagaatatcaaTAACAAAAGCAGAAGAATATAATAAACTATAGATATGTCTAGTCAGA
>XM_034314478.1
AAGATGCTCCAGTGTGATGTCAGCGCTGGAGATGTTGGACTTGGCGAGATTTCACCCTCACTTTTTCATTGGAGCTCAGCAGATGAAGGTGGagtatcatcatcaccatcatcttcctcttctctcctgcCTGATGCTTTAGTTGGTGTTGCTGCTGCTTCAGGATCCATCTCTGTCTGGGCTTTTTCTCATTTTGGACATCAGGATAAACATTTTTTCATCTCTTTGCTTTATGGAAACCCTTGGTTTTGCTTACCTTCAGGAGGAATAAGCAGACGGAAAAGGTCTTGCAGGACAATCCGGTTAAATgGGCCTTCTTGATTCCATATTTTCTGACACTCATATTCGCTGGCGTACCGTTGTTCTTTCTTGAGTGTGCTCTCGGTCAGTACACCTCCATCGGTGGCCTTGGAGTGTGGAAACTGGCTCCTATGTTCAAAGGTGTCGGCCTGGCGGCAGCAGTTCTGTCCTTCTGGCTTAACATCTACTATATTGTCATCATCGCCTGGGCCATTTATTATCTATACAATTCCTTCACCACAGAGCTCCCATGGAAATCCTGCAACAACCCCTGGAATACAGAGCAATGCTTTTCCAACTACAGCTTGGCAAACACGTCTAACATGACCAGCGCCGTCGTGGAGTTTTGGGAACGGAATGTGCATCAGCTTACGGATGGTCTGGAAAAACCAGGGGAGATCAGAGTGCCACTGGCAATAACACTGGCCATCGCATGGGTCCTGGTCTACTTTTGCATCTGGAAAGGTGTGGGCTGGACAGGAAAGGTGGTCTATTTTTCAGCCACATATCCGTACTTCATGCTGCTTATCCTGTTCTTCCGTGGAGTTACGCTGCCTGGAGCTAAAGAGGGCATTTTGTTCTATGTCACACCTAACTTTGAAAAGCTGAAGGAGTCAGAAGTGTGGCTTGATGCTGCCACTCAGATTTTCTTCTCCTATGGACTCGGCCTCGGGTCTCTGATTGCGCTCGGGAGCTACAACCCCTTCAACAACAACGTTTACAAGGACTCCATCATTGTATGCTGCATCAACTCCTTCACCAGCATGTTTGCtggatttgtcattttttccattGTGGGCTTCATGGCTCACATCACAAAGAGGTCTATTGCAGATGTAGCTGCATCAGGTCCAGGCTTGGCATTTTTAGCTTACCCAGAGGCTGTTACTCAGCTGCCCATTTCACCACTTTGGGCAATTTTGTTCTTTTCCATGCTGCTTATGCTTGGAATTGACAGTCAGTTCTGTACAGTAGAGGGTTTCATCACTGCCTTGGTGGACGAGTTTCCCCGCTTATTGCGAGGACGACGAGAAATCTTCATTGCTGTTGTCTGCCTTGTGTCTTATATCATCGGGCTGTCAAACATCACGCAGggtGGCCTCTATGTGTTCAAGCTTTTCGATTACTACTCTGCCAGTGGAATGTGTCTGCTCTTCCTGGTGTTCTTTGAATGCATCTCCATATCCTGGTTCTATGGTGTCAATAAGTTCTATGGAAATATTGAAGAGATGATTGGATACAAACCTTGCATTTGGTGGAAATTGTGTTGGGTGGTGTTTACACCTTTGATTGTGGCTGGTGTGTTCCTGTTCAGTGCGATCCAGATGGTTCCCCTGACCATGAATAATTATGTGTTCCCAAAGTGGGGACAGGGTGTAGGCTGGTGTATGGCCTTGTCTTCTATGGTCCTCATTCCTGGTTACATGGGCTACATGTTCCTAACGTTGAAAGGCTCCTACAAAGAGCGTCTCCGGATAATGATTCAGCCTACGGTTCTGGTCAGAAGCCAAGAGAATGGGCCCGAGCAGCAACCTGAGAGTGTGAATGCAGCCAACGATGAGGCATACATCTAAAACCCTGGACATT
>XM_034314479.1
ACATTTTTTCATCTCTTTGCTTTATGGAAACCCTTGGTTTTGCTTACCTTCAGGAGGAATAAGCAGACGGAAAAGGTCTTGCAGGACAATCCGGTTAAATGTGTCGGCCTGGCGGCAGCAGTTCTGTCCTTCTGGCTTAACATCTACTATATTGTCATCATCGCCTGGGCCATTTATTATCTATACAATTCCTTCACCACAGAGCTCCCATGGAAATCCTGCAACAACCCCTGGAATACAGAGCAATGCTTTTCCAACTACAGCTTGGCAAACACGTCTAACATGACCAGCGCCGTCGTGGAGTTTTGGGAACGGAATGTGCATCAGCTTACGGATGGTCTGGAAAAACCAGGGGAGATCAGAGTGCCACTGGCAATAACACTGGCCATCGCATGGGTCCTGGTCTACTTTTGCATCTGGAAAGGTGTGGGCTGGACAGGAAAGGTGGTCTATTTTTCAGCCACATATCCGTACTTCATGCTGCTTATCCTGTTCTTCCGTGGAGTTACGCTGCCTGGAGCTAAAGAGGGCATTTTGTTCTATGTCACACCTAACTTTGAAAAGCTGAAGGAGTCAGAAGTGTGGCTTGATGCTGCCACTCAGATTTTCTTCTCCTATGGACTCGGCCTCGGGTCTCTGATTGCGCTCGGGAGCTACAACCCCTTCAACAACAACGTTTACAAGGACTCCATCATTGTATGCTGCATCAACTCCTTCACCAGCATGTTTGCtggatttgtcattttttccattGTGGGCTTCATGGCTCACATCACAAAGAGGTCTATTGCAGATGTAGCTGCATCAGGTCCAGGCTTGGCATTTTTAGCTTACCCAGAGGCTGTTACTCAGCTGCCCATTTCACCACTTTGGGCAATTTTGTTCTTTTCCATGCTGCTTATGCTTGGAATTGACAGTCAGTTCTGTACAGTAGAGGGTTTCATCACTGCCTTGGTGGACGAGTTTCCCCGCTTATTGCGAGGACGACGAGAAATCTTCATTGCTGTTGTCTGCCTTGTGTCTTATATCATCGGGCTGTCAAACATCACGCAGggtGGCCTCTATGTGTTCAAGCTTTTCGATTACTACTCTGCCAGTGGAATGTGTCTGCTCTTCCTGGTGTTCTTTGAATGCATCTCCATATCCTGGTTCTATGGTGTCAATAAGTTCTATGGAAATATTGAAGAGATGATTGGATACAAACCTTGCATTTGGTGGAAATTGTGTTGGGTGGTGTTTACACCTTTGATTGTGGCTGGTGTGTTCCTGTTCAGTGCGATCCAGATGGTTCCCCTGACCATGAATAATTATGTGTTCCCAAAGTGGGGACAGGGTGTAGGCTGGTGTATGGCCTTGTCTTCTATGGTCCTCATTCCTGGTTACATGGGCTACATGTTCCTAACGTTGAAAGGCTCCTACAAAGAGCGTCTCCGGATAATGATTCAGCCTACGGTTCTGGTCAGAAGCCAAGAGAATGGGCCCGAGCAGCAACCTGAGAGTGTGAATGCAGCCAACGATGAGGCATACATCTAAAACCCTGGACATT

Function

symbol description
slc6a1b Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within neurotransmitter transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and cell surface. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human SLC6A1 (solute carrier family 6 member 1).
slc6a1 Enables gamma-aminobutyric acid:sodium symporter activity and sodium:chloride symporter activity. Involved in gamma-aminobutyric acid import; inorganic ion transmembrane transport; and response to inorganic substance. Is active in plasma membrane. Biomarker of temporal lobe epilepsy.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932778.2 True 4604 mRNA 0.43 15 13059983 13073758
XM_034314478.1 False 1887 mRNA 0.47 14 13059983 13071392
XM_034314479.1 False 1546 mRNA 0.47 13 13060192 13071392

Neighbor

gene id symbol gene type direction distance location
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding upstream 48924 12975527 ~ 13011059 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 100877 12789492 ~ 12959106 (+)
iars1 iars coding upstream 284839 12694286 ~ 12775144 (+)
sarnp sarnp coding upstream 433375 12608353 ~ 12626608 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding upstream 453930 12599069 ~ 12606053 (+)
hrh1 hrh1 coding downstream 66812 13140570 ~ 13161692 (+)
atg7 atg7,LOC107697561,LOC107750032 coding downstream 93397 13167155 ~ 13279101 (+)
syn2b syn2,LOC107758022 coding downstream 285166 13358924 ~ 13425482 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 366901 13440659 ~ 13476589 (+)
tsen2 tsen2 coding downstream 407653 13481411 ~ 13495985 (+)
G306756 NA non-coding upstream 155142 12904208 ~ 12904841 (+)
G306744 NA non-coding upstream 262001 12797748 ~ 12797982 (+)
G306503 NA non-coding upstream 486224 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 611609 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 764254 12295369 ~ 12295729 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 122717 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 215031 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 257929 13331687 ~ 13334245 (+)
G306961 NA non-coding downstream 259048 13332806 ~ 13333248 (+)
G307079 NA non-coding downstream 276695 13350453 ~ 13350680 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 597447 12457601 ~ 12462536 (+)
G306103 NA other upstream 1544170 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1578883 11480669 ~ 11481100 (+)
G305869 NA other upstream 1733623 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1744547 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 600596 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1106025 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1440834 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2683132 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3415603 16489361 ~ 16501684 (+)

Expression


Co-expression Network