rbm12 (rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817)


Basic Information

Item Value
gene id rbm12
gene name rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11079081 ~ 11086693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932791.2
AGGCGGCGAGAGTGTGCACGCGCAGAGGAGACGTCGTTTTTTAGTGACAAATCTCAACCAACTAAAACAAATCTGTTAACGCAGATATTTTCGTCGagagttgattttaaatgattgaCGACAAGATTGGCTTGGGTTTCGTCCACAACTAATAGCGAACCACCACTAATTATACAGGTGTGCGTTATAGCACCTCAGCATGGCTGTGGTCATCCGTTTGCAGGGCCTCCCCATTGTGGCTGGCACCATGGACATTCGCCATTTCTTCTCCGGTCTGACAATCCCGGATGGTGGCGTGCATATTGTAGGGGGTGACCATGGTGAAGCTTTTATCGTGTTCGCAACAGATGAAGATGCAAGGCTTGGAATGATGCGCACAGGGGGAACAATCAAAGGTTCCAAAGTGTCACTGTTACTTAGCAGCAAAACTGAGATGCAAAACATGATTGAGTTGAGCCGCAGGCGTTTTGAAACTGGTAATGCAGATGGGGCTTCAGGAAATAGTAACAGGTCAGGACCTCCCAATGTTACTGGAGGAACTGAAAGGGGTAGCCTGCCAACCACTGCACAAGGTTTTAGTAATACCACTTCAACTACAGCAACCACAGCTGTCTCTGTTAATGAACCTGTAAGCAACAAAAGTGCTCCAACCTTTGCCTCTACAACCATAGGCAACATGCCTCCAAACTTTAATAATTTCAGCAGCCCAAATCTTAGCATGGGGTCCACCATGACTACCGCCATGTCCTCCTTAAGTACTGTACCTCCTCCAATACCCCCCTTGCCTACGATGCCAACCTTACCACCTATGCCGCCCATGCCAGTACCACCACCAGTGTCCACGTTACCCCCAGTACCAGCTGTAAACCCTTTAACCTCAGTGCCACCTGTCCCTCCCATGGCTCACATGCCACACCTATCTGCACTCCCTCCTTTTAATCCTGGTGTTCCCCCACCAGTTGGACCCGTGGCTGGTGGTCTTGCTGCCTCAGGACCACCTTTGTCTCTTGGAAACCCAAATCCAATGTTTCTTAACCCCCTAAACCCTCTAAATCCACTCAATCTCCAGGCTCATTTGAAATCAGCACTGATGAACCCTGATGAGTTGTACATACAGGTTCAAGGCCTTCCTTACAATACATCTGAAATTGAAATTGGAGAATTTTTCCATGGATTGGGGGTTGACTCTATTCGGATACTCAGAGATGGTCTTGGCAGGAGCAGTGGCAGGGCCTTGGTTAAATTTTTTACACCCCAAGATTCCTTTGAAGCTCTTAAACGAAACACTGGTATGATAGGCCAAAGGTATATAGAAATATCTCCTTCTTCAGAAAGGCAATGGAGAGATACCCAGGGATCATGTGCAGAGCAGCTTAAAGTAGGTAGTGACTCGGAACAGAGTCGGCATCATCGTGGAAGCGCTACCTCTGCTTCCCCTTCTGGTCGAGAGCGTGCTAGGTCTCGGTCACCTCATAAACAAGagtactgtgtgtatttaaagGGGCTCCCGTATgaagcagaaaataaacagatatttgAATTTTTCAAAAACCTGGACATTGTTGAAGACAGCATTTACATTGCATATGGACCCAATGGCAGGGCAACAGGAGAGGGTTTTGTTGAGTTTAGAAATGAAATGGACTACAAAGTTGCTCTGGGATGCCACATGCAGTACATGGGAAGTAGATTTATACAAGTGCACcctattacaaagaaaaatatgtttgaAAAGATTGATGCAATTCGCAAAAGAATGCAGGGCTCCCAGGGGGATCATAAAGGTAGCTTATCAGAGGGGGGAAAGGGTGCTCGAATTTGTGCTCATATAACAAATATCCCCTATAATGTGTCCAAGAAAGATGTACGCCTGTTTTTGGATGGAATTCAATTGTTTGAAGACAGCCTCAAAGTACTAGTTGATGGCAACGGAAATGGCCTTGGCCAAGCTGTGGTGCAGTTTAAATCTGAGGAGGATGCCCATAAAGCTGAACGATTACATAGGCAAAAGTTAAATGGCAGGGATGCGTTTGTCCACTTGGTTACATATGAGCAGATGAAGGAGGTTGAGAGAAACCCTCCCCCACAGTCAAAGCGGGGACAAAAGGCTCAAAACAATTCCCTTGCCCATGCACATGCCCAGGCCCAAGCTCAAGCTCAGGCCCAAGTGCAAGCCCAAATCCAAGCTCAAGCACAACATGCTTTCCCTGGAATGACCGGGGAGGAGTTCAATTTTCTCAGAAGTGCTGTGGGGAACCTTGGTAATGGCCCTCCATTTGTCAACCCATTTGCTGCCCCAGGTAATGGCTTAGCAGGCCCACCACCTCTGCCTCCATTAGGTACAGCTTTGGGTGatgtttcacttcctgttcctccTCCTATTGTTGGGGGGCATTTACCTGGGCCTGTCCTGGAGCCCCCTGGTTTCCGCCCTGGTGGCAGCAGTGCACCTCCTGGTTTTGTTGGAGCCCCAGAGAGCTTAAGGAGCATGCCGTCATTTGATAATGGATCTTCAAGGAAAAGTGCAGGTCAAAACCGTGGTGGAAACCAAAGTCGTTCAGCAGGTTCTCAACCTGCCTTTGGTCCATCCTCTGAAAATCCAAGGGCATCAACCACTGGTGGTGCAGGCAACCCACGGCCAACCATTGTCAAGATTCAAAATATGCCTTTTACTGTCACGGTTGATGAAATATTAGATTTCTTTTATGGTTATAAGGTGTTGCCTGGCTCTGTGTGTCTGCAATTTAGTGAGAAGGGACTGCCTACAGGGGAGGCAATGGTTGCATTTGATTCTCATGATGAAGCAATGTCTGCTGTTATGGACCTGAATGATAGGCCTATTGGTGCAAGAAAAGTAAAAATCACTATGGGATGAAGGTAATCATGACAAAATAAATGGACATGCACTGAGCTTTTTATATTCACAGAGCTTAGAGTGgcataacaattttttttctcttatcaGATGATATGCTAAATTAACCAGTAAAGTAGATCCAAGAGAAAAACATATGTTGACCCTTTTAAAGTGTGATTGTGAAAGCGAACTGTTTAAGGGTTATTGTTTCTTTGTCTAAAGTGCTTGAGAGTGGCGTCCAATCGTGTGAGAGCTGAGGTTTTGTAGAATTCATAAAGAAGTGTAAGAACACTTAATTGCTGCATTTTGCAAGTGTAGGCTGTTGGCTGTGCTGCAGTGTCTTTATTGGCTTCTCTTTCTCTAATTCCCTGTGTTCATATTCTTTACCCAAATGTAGTTTTTGACCATTTGCACTACTACATGTGCCGTATGTTTTGTGGTTTATGGTTTCTCAGATGGGGTGTACACCTAATGCTGCCATGCTCGGTGTATGTGCTCTTAAATACAACTCTTAGGCTTCTGTTTAGTTCTATTTTCATAATAGACAGTAAATGCACGAAAAGTGTTTTCAGTTGATGTTCCACTTTGAGTGCAAGGTCTTTAGGATGAATTTTACCTGTGAGAAACACAAGATGATGAATGCGATGACTTTATTCACTATAATTGGATATGCagcattgtttaataaatgcggcaatgtaatgttttgtaaatgaaaGCTTTACATTCTTCCTTTTAACTGCTCTccaccatgtgtgtgtatttgcccCTCTTTTTTGCTGTGATATATGGTAgcggtgttttttttttttgtttgtttgttttttttttgttttgtttttgtttgtttgttttttaagatgTCAGCTTTACAGTTATTTTGGTGTTAAAGTTTATTTGCTGTTGTACATATTTTTTCCAGCACAAGTATTTTGTCAATAAAATGACATTCCTGAATTTTTGAATTTGCAAGGTATTGTATTTTTTCTCCTGTCCCCCTTTCCCTGTTCCACTCTACAAATAATCAATAAAGATTGTTTTTCCTCTGCTGA

Function

symbol description
rbm12 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in schizophrenia 19. Orthologous to human RBM12 (RNA binding motif protein 12).

NR:

description
RNA-binding protein 12 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K24526 RBM12; RNA-binding protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932791.2 True 3909 mRNA 0.44 3 11079081 11086693

Neighbor

gene id symbol gene type direction distance location
ppcs ppcs coding upstream 14980 11061008 ~ 11064101 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 789266 10280520 ~ 10289815 (+)
gnl3l gnl3l coding upstream 940195 10102314 ~ 10138886 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding upstream 979559 10095530 ~ 10099522 (+)
lmod1b lmod1 coding upstream 1505792 9568051 ~ 9573289 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding downstream 20598 11107291 ~ 11140313 (+)
map1lc3a map1lc3a,LOC107551126 coding downstream 137455 11224148 ~ 11235261 (+)
cfap92 NA coding downstream 169321 11256014 ~ 11273479 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 457046 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 522229 11608922 ~ 11671459 (+)
LOC113538022 NA non-coding upstream 3491 11073762 ~ 11075590 (+)
G305642 NA non-coding upstream 278850 10797969 ~ 10800231 (+)
G305584 NA non-coding upstream 406507 10667197 ~ 10672574 (+)
G305583 LOC107676803 non-coding upstream 414867 10642266 ~ 10664214 (+)
G305568 NA non-coding upstream 537549 10541311 ~ 10541532 (+)
G305734 NA non-coding downstream 42595 11129288 ~ 11129487 (+)
G305735 NA non-coding downstream 47822 11134515 ~ 11134724 (+)
G305849 NA non-coding downstream 186892 11273585 ~ 11275616 (+)
G305833 NA non-coding downstream 211629 11298322 ~ 11300713 (+)
G305834 NA non-coding downstream 216597 11303290 ~ 11304633 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 305639 10764274 ~ 10773442 (+)
G305515 NA other upstream 565811 10512671 ~ 10513270 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 1527320 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 2517379 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 3052152 7974591 ~ 8026929 (+)
G305727 NA other downstream 25046 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 54543 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 128059 11214752 ~ 11221540 (+)
G305863 iqsec1,iqsec1b other downstream 227491 11314184 ~ 11315436 (+)
G305869 NA other downstream 238911 11325604 ~ 11326360 (+)

Expression


Co-expression Network