smug1 (smug1)


Basic Information

Item Value
gene id smug1
gene name smug1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20896980 ~ 20901411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932826.2
actacacatcccagaatgcaccacGGCTCCAATGTCTCTTTGTTGCCGGAAAGCTACCGGAGAATGCTAGGACACAATGATCTTCCGAGGTTGGATAAAGGAGACTCGGctcaggaggaggagcagcaggcGGAGAAAATCATCTCAAACCCAGATGGATTTTTCCCAGACTGCTCCCCAGCAGTGGCTCAGTTTCTCCAGGCTGAGCTGGAACTCAGCGCTCGTCTGCGAACTTTGACCTTTAGGGATCCGGTGCGTTATGTGTACAACCCGCTGGAGTACGCGTGGGACACGCACCGTCTCTACGCTGAGAAATACTGCCACGGCGGACAGAGCGTCCTGTTCCTGGGGATGAACCCGGGACCGTTCGGCATGGCGCAGACCGGAGTTCCATTTGGTGAGGTAAAGGCTGTGCGTGATTGGCTGAAGATCTCCGGAGAGGTGGGTCATCCTCCTAAAGAGCATCCGAAACGTCCAATCAGAGGCTTTCTGTGCTCTCAGAGCGAAGTGAGCGGCGCGCGGTTCTGGAGTTTCTTCCAGGAGCTCTGCGGAGAACCCGAACACTTTTTCCGTCACTGTTTCGTCCATAACCTGTGCCCGCTGATGTTCATGGCCGAGTCGGGGAAGAACGTGACGCCCCCCGAGATGCCCGCCGAAGACCGCGCCACGCTGCTGAGCCACTGCGATGCCACGCTGTGCCAAGTGGTACGTGCCCTCGGCGTTTCCATGGTGATCGGAGTGGGCAAGGTGGCGGAGCAGCGAGCCCGACGCAGCCTCGCCGAAGCCGGAGTGGAAGtgaaggtggagggaatcatgcaCCCTTCACCCAGGAACCCGCTGGCCAATAAGGGCTGGGCTTCTGTGGCTCGAACCAAATTAGAGCAGATAGGGGTGTTGGGTTTGCTCACCAAGTGACTGAACACTTacagaatgtttttatttgtatatattgttttatataaagTACACTACACTCA
>XM_034314359.1
GTTTTAGGAGGAAAGAAACTTTTCTAATGTTGGATAAAGGAGACTCGGctcaggaggaggagcagcaggcGGAGAAAATCATCTCAAACCCAGATGGATTTTTCCCAGACTGCTCCCCAGCAGTGGCTCAGTTTCTCCAGGCTGAGCTGGAACTCAGCGCTCGTCTGCGAACTTTGACCTTTAGGGATCCGGTGCGTTATGTGTACAACCCGCTGGAGTACGCGTGGGACACGCACCGTCTCTACGCTGAGAAATACTGCCACGGCGGACAGAGCGTCCTGTTCCTGGGGATGAACCCGGGACCGTTCGGCATGGCGCAGACCGGAGTTCCATTTGGTGAGGTAAAGGCTGTGCGTGATTGGCTGAAGATCTCCGGAGAGGTGGGTCATCCTCCTAAAGAGCATCCGAAACGTCCAATCAGAGGCTTTCTGTGCTCTCAGAGCGAAGTGAGCGGCGCGCGGTTCTGGAGTTTCTTCCAGGAGCTCTGCGGAGAACCCGAACACTTTTTCCGTCACTGTTTCGTCCATAACCTGTGCCCGCTGATGTTCATGGCCGAGTCGGGGAAGAACGTGACGCCCCCCGAGATGCCCGCCGAAGACCGCGCCACGCTGCTGAGCCACTGCGATGCCACGCTGTGCCAAGTGGTACGTGCCCTCGGCGTTTCCATGGTGATCGGAGTGGGCAAGGTGGCGGAGCAGCGAGCCCGACGCAGCCTCGCCGAAGCCGGAGTGGAAGtgaaggtggagggaatcatgcaCCCTTCACCCAGGAACCCGCTGGCCAATAAGGGCTGGGCTTCTGTGGCTCGAACCAAATTAGAGCAGATAGGGGTGTTGGGTTTGCTCACCAAGTGACTGAACACTTacagaatgtttttatttgtatatattgttttatataaagTACACTACACTCA

Function

symbol description
smug1 Predicted to enable single-strand selective uracil DNA N-glycosylase activity. Predicted to act upstream of or within base-excision repair. Predicted to be located in nucleus. Orthologous to human SMUG1 (single-strand-selective monofunctional uracil-DNA glycosylase 1).

NR:

description
single-strand selective monofunctional uracil DNA glycosylase

GO: NA

KEGG:

id description
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932826.2 True 977 mRNA 0.56 3 20896980 20901411
XM_034314359.1 False 916 mRNA 0.56 3 20899115 20901411

Neighbor

gene id symbol gene type direction distance location
slc2a10 slc2a10 coding upstream 235291 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 246807 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 275741 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 293916 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 320620 20546892 ~ 20576360 (+)
calcoco1b LOC108255279 coding downstream 131712 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 212023 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 236398 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 309841 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 509365 21410776 ~ 21435824 (+)
G311486 NA non-coding upstream 12139 20882446 ~ 20884841 (+)
G311489 NA non-coding upstream 53525 20842278 ~ 20843455 (+)
G311508 NA non-coding upstream 92056 20767078 ~ 20804924 (+)
G311505 NA non-coding upstream 114620 20781762 ~ 20782360 (+)
G311504 LOC108255060 non-coding upstream 127152 20767626 ~ 20769828 (+)
G311488 NA non-coding downstream 1901 20903312 ~ 20937881 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding downstream 25592 20927003 ~ 20983511 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding downstream 31267 20932678 ~ 20943629 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding downstream 46910 20948321 ~ 20951538 (+)
G311599 hoxc11,LOC106565461,LOC108276183 non-coding downstream 66304 20967715 ~ 20968865 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 14615 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 36253 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 719708 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1028499 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1113055 19768983 ~ 19783925 (+)

Expression


Co-expression Network