lrrc38b (lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684)


Basic Information

Item Value
gene id lrrc38b
gene name lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17297720 ~ 17318657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932831.2
GCAGAGGATTTCTTCGTGGATGCGCCATAGCAACGGAGCTGCAAATCTGTGTTGCAAATTATTGGCTGAAACTCAATTCACACCACGCAGAAGACTGAGTGAAAGGTGGACTACAGCATATGACTGGGGGAATTCTCCTGTTAGGATCGTGACCGCTTCGTGACGCTTGGCTCTGAGGTGCTTAAGCTCACGCTGATAGACGCTCAATCAGTCCTGGGGGGTGATGCTGGTTGACAAATGGAAGGACTGAGCGATTGCATGCTGGAGACAACATGAGCTGGATCCTTTTGTGTCTGTTTGCCATGCATGATCGACGGTGGTTAAATGAGGGAGAAGACGACGAAAAGAACCCTTTCATTTACCTCTTGGCTTGCCTTAAAATTCCCCTTATACTACACTCTGTTCACTTCCCctcccctttctctttctcgctttcgctctctcactccctcCCACAGTTTCTCTCCTCCCTTCACTCATCAAAGCCAGTAGCCTAGTATTCTCTCTACAGCTGCTTCCTCTATGGTCCCTTGGAAAAACAGCCTGCACATCTCTCACTTGCTTCTCAAGGCAAGaccttttttaacatttcatcgCCAGGACAGCAGGATGCTTCCATGCAGGCTTTGATTCCTTTCTCTCCTTGTGCTTTCCCCTTCCCCTTCCCTCTCCTAAATTCCTGCCCTTTGACCCTGACCCTCCCCTCTCCCCTCAGTTGCCCCTTACCCTCTATTCCCTTCTCTATCTTCACACCCACTTGACCATGTTGCCATGTGTCTGCCGGGTCCATCCTCTCCTTGCCTTTATCTCATTTGCCTTGCTGACACGAGGAGAAAACTGTCCAGCCACCTGCAAGTGCCCGGACCCTCACACGGTGGATTGTAGCGGTCGAGGACTCACTCGCCTCCCAGACGAGATCCCGCTGGATGTGCGCAGGTTGCTGCTGTCCAACAACTGGATCCCTCGCATTCCCTCTGACTTTCTCGTGCTCTACAGTGACTTAGTGTATCTGGATCTCCGGAACAATTCGCTCTCACACATTGAGCCAGGAACCTTGAGCACCTCCTCCAGGCTAGTTTTCTTGGACTTGGGCAGCAACAACTTGACTGAGATCCCGAAAGGAACATTTGGTGAGTCACGGAGCCTCATCAAGTTGCGCTTGGGCAACAACCCTCACCTGAGCATGGTCAATGAGGACGCCTTCAGGGGCTTGACCTCACTACGAGAACTTGAACTGGAGCGCAATGCCCTTTCCAGTCTCCAGGTTGGTGCGCTGAGCCAGCTGCCTTCTCTGCGGGTCGTCAGGTTAGAGGGCAACCCTTGGGTGTGCAATTGCAACTTTGCTAACCTTTTTGCTTGGCTAGTTGAGAACAGCCACAAGCTTCCAAATGGTATAGATGGTATGGAGTGCTCTTTGCCCACCGATGGCCGCCGTGTGCCTCTCAGTCAGCTCTCCCAGGACAGTTTCCGGGAATGTCAAATCACCCTGACCCTCACCgacttcctcatcatcatcttctcgGGCATCTCTGTGTCCGTGGCGGCCATCATGGCCAGCTTCTTCCTGGCTTCCACCGTGCACTGCTTCCAGCGCTGGAGCAAAGGTACCAAAGGTGAGGATGAGGAGAGCGAAGAATGATCAAGAAATCGGACCACACGCATTGGACTGTGTGAACAATCAGACACCAGCTACATGAACGAGGATGTCTTTGGATGAGAACAACACGGCACACCTGCACTATAAAAATGGCTGATTATTCCCATCAGTGGATCAATGGATGGGTAACATGGAAACATGGAAACATGGAAACTAGCCATAGTATTTAAATTTTGTGGTTCAATTGTTACATTTTGGTGTCCTCAGTAATGGATTACAATCAGTATCATAATATAATAAGATAATATTAATagtcttaaagaaaaaaaaagacttgctgCTATTTTATTGTGCCAAATTAGTGCGGATAAGATGGAAAGCCTAGTTAAGAATGTTTTAATAGAAACTGTAGCCTGTATACAAGAAAAGTTGCAGGTTGAATATagaaataatgtaaaattttatggtcgaaggaaggaaggaagccaTTCGGTAGTTTCCTATTTTGTTCACAGGtctaaaataatcaacaaaaagcataaaaagtAGTGAGACATCTATTTAAGGAATGGATAGCTCAAATGttgcactttaaaaataaatttcctCCTACATCCTGCAGGCCCTCGGTCTTACCTAATGGACATGCCCAGATCTGCCAAAGATGATACTTAGAAATGAGGGACAATAAGAGTTTTAAATGGTTTAAGAAGCTGGAGGTGTGgtaaaaatatagatttatttttgctttcagACACATGTGAATATGTATAATCAAATGACATATCTAAACGTATTTGCGATATTGCATATTTAACTTAAATGTGATGCTTCCAGATATTCAGTTAGTTACGGAGGCAAGGGAAGAAGAAATGCGCTTCTTTCATGCTGTGATATGTCATTGCTTACATcttactcaaaaaaaaagaaagaaagaaatattggTATATCTGTTGATTGTTGTCCTGTGTAAACTGCAACACCATTCACCTGCTCATTAGTATGACATGTATATTAAAACCATAAGtcacataataaaacaaaacctcaTCAGTTTAGCAATCTGGCTGCATAAATTAGATCTGCAAAAGAAGCCATATTTCAGAAGATCTTGCTGAATTGGTTTGAAAGAAACCCGGAGCCATATTAGAGAAACATCAAAAATTAAGATTTAAACAATGCTAACATTGTGTTTTTCATAGAAACAGTAGGAAATAAAACTTACGCTAGACCCCATTTGGGTTTATCCTAACGCTAAGACACCCATTTTAGTGAGTTAGGAAGCTTCCTGTTGGGACTTGAGATGAAAACATGGACTTGGGAATTGGGATTTGTCCTAAATGACATGTAAAGCGAACTTGTCATGGTTGGCTAGTTAAggattcttagcttcctaatATGGTTCTAGTTGAAACCCTGtctgagaggggaaaaaaacatgctctATTGCAGGGTTCTTCATAGAACCTTTAAATGTTCTCTtagagagataaacagatttACTCTTAAGGATGCTACGCTCTCCAAAAAGGAAtcggttctttggatagttaagggttctttgcttCCTAAACGAGTTGGAGTTCTTGCTGAAAAGAAGCCCTCTGCatgtagggttctacatggtACCTTTAATGATTGCCCCATACATAACCAAGTTATAGATTTGTTTATTacatgaatatataaaaatatacaatgcaatataacagagaaataaaacatttaccaGTCAAAAAGGTTCCCTTTATCACACTTATGTAGATTtgtatgtagaaccctataacaAAGTGTTTCCTTTCAGAAAAGATTCCATGAAGAGCCTCTTTTAAAAGCTAGAAcccttaaccatccaaagaacccacAAGGAACCATTTTTTCTAACAGTGAACCATTTTCAgagtcttatttttttttgcaaaggaataataaaaactaatatttagtttaaaaaaagtcttcttGTGTTCCATGTTAtgcagtcaactccagaattattggcacctttgaGGAGAATGGGCATAAATGAttggaggaataaaaacacaattcaAATATCCTACACAAACACTCCTTTTCATTTACCAAATATTATTCTGATACggactgattttaaaaaatatttttaaaaattatatatataaaattaaggtacattaaatgtgataaataaattaaatgtacataaaaatgcaaaaaaattgtaataaaaatttcagtaaaaaaagaaaagattggTTACATGTAAAATCACTTTACCATCCATCAGCTTGGGGAAAATCAAATGGCTTTAAACACAAAAGACAAATTGCACATTAGTGCACAAAAATCTTATCACAAAGTTAAGGTGATGAGGCTTtgatatcaaatatcaaaaatgtattaaaagggCAGTAAATTGcaaaaaatttgaatttgagcaATATTTGTGTGATGACTTTCTGCCTTTTCAAACTACATTAATTTACGTTATATTCACTATGGTGCAGGTTTATAAAGTAATCAGCTGGTTGATTATTTCTGCATCTTGGAGAACTTTTCTAGCTCTTCTGCACACATACTTCTGTATCTGCAGGTAACAGCCTCCACAATgatgagatcagggctctgtggcGGCCAAAACCATCTGCTGTAGAGCACCCTGTTTTTCTGTTCGTTGAAGAGGTTCTATAATAAcagaataaatttaaaatctgCTCTTTTCTACTGACACACTAATGCAGAAggcataaaataaatgcatacgATAAAACTTAGATAAAAATACAggacagtgtgttcagtgtacTATATTCTTATATAATTCTGGGTGACTGCATCCCCGAGAAGGAAACTTTACTTTAACAACTCTCCTTTTGGAGCGAGTCAAAATGATTGACCCTTTCCTAAGCGCTCACACAACCAAGCTATTGGATTTGAACAAGCAGCAGTGATTGCACCACATCAGATTGAATGCCATCTAAAACACCCTAACTGTCTGGGACCATAATCAATATTTCCATCATTTCCATTTCCAGAGTTAGACAGAGTTAAGAGTTACATGATAAATAAAGTAGGCTGTATGCCCTGTATTCCCTAATATTGATGATTGGTTATACTCAATATATCTAACAATACCCGGTGTATATGTATTAGCATTTAAATTGTGGCCTGATCATCATAAATATCTACTAATCTTTCACATTGTTTAAAGAATATGTGCTCGCCATTGTCAGATAATCTGTGTGAGAATGTTCAGAGATGGGTTATAGACGTCATGCTAAATGGAATATTGTGATGACAAATCATAAAGATTTCCAAACCAAATATCCTTCTGTAGCAGAAACGATGTCTTCAGtgtgctgttattattttgATGCTTTCTATGCAGTGATTTATGATTGCAAAAATACTGGATTTGCATGTAAAATTAAATCACACTTTATTCTACTGTATAGATGACACTTTTATAGGAAAACacagtgcataagtattcacccctttggatttttgcacagtttgttttatttgaccAATTTGTTTTAATCCCATCATCTTACttgaaaaaaatgtggaaaaagaccaagggggtgaatacttattcaaAGCACGGTACATGGTAACATATGGTACATACCTTTCATATTGCGTATTTACTAAAGTACACCATGACAATGTGTAAACTCCAAAGTTTGTACAGCAGTATTTGGTGTTAAAGTTCtctattgaattctcaaatcagtagatgttgattaattttctataactgcagctttGGCAGTAGTTCCAtctataattcaaatcatagatttatattaatgcattcattctaagATGGTAAAGAAATGATtgttttatagctgttataatgtgatAACCAGAAaattacacaacacaaaatgtaactataaatggataaaaaaaagtaaggcatgtcattatttaattcataaaattttgaaaaaagtaatcattagcaaattgctgtggtataagaggaagaaaacgcATCTCACACCACCCAATCATTGATTTTCTTATAACCACATGACCCAATATGTACTAATAAGTGGAATCGAGTGCGGCTGTACACACCTGGATGTTTTCACATAAGTTACTATTTACTTTCAAATTCAATATTCAAAGAATGTACAGGAAATTACTTGTAATTGaatattaaaaagttaaaaagttacTGCAACTATGCTTctgtactgtaaaataaagtgcgACTGAAAACTGTTTTGTCTGGTTTTACGTTCTGTAGCTTTGGGCATTTCTAGAAAAATATGGTCATAGACATATCTTATAACCCATCTCTGAATGTTAAAGGGAGAAGGATGCTgtgtttattgtcatatgtgTCTTGTACCATACTACTGCTGTTACACTGTAAAGAGTGtaaagtaatgtgtgtgtaacactATGATAACATGGAGTTAAAAATGTTCGTCCTGAGTCTTGAACACCATGTATACCAGTAGATATCCAACTACTATG

Function

symbol description
lrrc38 Enables potassium channel activator activity and transmembrane transporter binding activity. Involved in positive regulation of voltage-gated potassium channel activity and potassium ion transmembrane transport. Part of voltage-gated potassium channel complex.

NR:

description
leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932831.2 True 6076 mRNA 0.39 2 17297720 17318657

Neighbor

gene id symbol gene type direction distance location
LOC113538082 LOC108254746 coding upstream 117041 17179622 ~ 17180679 (+)
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding upstream 127716 17169010 ~ 17170004 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding upstream 133112 17163772 ~ 17164608 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding upstream 162606 17133887 ~ 17135114 (+)
LOC113537879 NA coding upstream 182559 17111543 ~ 17115161 (+)
aadacl4 aadacl4 coding downstream 58302 17376959 ~ 17380928 (+)
c20h1orf158 c21h1orf158 coding downstream 62342 17380999 ~ 17387719 (+)
LOC113537884 NA coding downstream 706984 18025641 ~ 18028630 (+)
rnf207a LOC108255220 coding downstream 711536 18030193 ~ 18034462 (+)
rap1ab rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898,LOC108413334 coding downstream 784180 18102837 ~ 18118319 (+)
LOC117599872 NA non-coding upstream 19888 17276440 ~ 17277832 (+)
G309461 inpp1 non-coding upstream 49645 17244700 ~ 17248075 (+)
G309389 NA non-coding upstream 113182 17172262 ~ 17184538 (+)
G309208 NA non-coding upstream 281476 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 297696 16903181 ~ 17000024 (+)
G309525 NA non-coding downstream 65131 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 600879 17919536 ~ 18018096 (+)
G309970 NA non-coding downstream 645767 17964424 ~ 18058167 (+)
G309981 chd5,LOC108414967 non-coding downstream 657958 17976615 ~ 17977091 (+)
G310007 NA non-coding downstream 722225 18040882 ~ 18043514 (+)
LOC113537865 LOC108280979 other upstream 34057 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 796036 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1497830 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2772744 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2820903 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 1368740 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1768368 19087025 ~ 19087806 (+)
svbp NA other downstream 2176101 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2189532 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 2450326 19768983 ~ 19783925 (+)

Expression


Co-expression Network