si:ch211-112f3.4 (LOC108254938)


Basic Information

Item Value
gene id si:ch211-112f3.4
gene name LOC108254938
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 18790926 ~ 18803902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932834.2
ATCGCGGTTCAAGAGTGGAACCTGTGCGCAGAAGTGACTGGGCGAGGCTCAGAGCGTGTACAAGTCCAGAGCTCCATCTCATCTGTCGGTCCTGCGGGCGGAGGCGGAATCTGGGGCTTCTTTAAGCGCGCGCATTGAATCCTCATTTCTTTTCCCATCCAAGGCTCCTGGGTTTATTAGTAACTCATTACGCGTTCGTCTGATGCTTTCCATTTCATCCTTCAAGAGCTGCGGTGTCACTCATTTCTCAGCAACCTGCGCGTGATTTTATAACGTTAAGCACCGCAAATGTCTCGAGCGTGTGCGGCACCGCAGCCGATTCGCGCCGCGCGCAAAACCGAGTGGCTCCGCTGCGCCCTCGCGCACCACTTCTGCCGTGAGTCCGGGGTCGAGAACGAGATCGTGGTGCTGGCCACCGGCATCGACCAGTACCTGCAGGAGGTCTTCCACCACCTCGCCTacgccagcagcagcagcagcagcagcgaccTGGTGTCCGCACAGGATTTCCGGCTGCTCTGCTCGGTTCTCGGTGTGAGCgcggaggaggatgaggacagAGCGCGCGAGGACCGGGACGTGTGCTCCGCGCTTCCCCCCGCGCTCACCTTCAGGGAGTTTCACTCGCGCCTCTGCGGTTTCTTCACCATCCGAGCGCGAGACGCACCGACATCCGCGCGCCTTCCGGTCACCGAGGAAACGGAGCACGTGGAGCGCGAGATCAGGCTCCGGTGGCCGCGCGTGCGGCGGAGAAAGTGCGTCAGCTTCGACTTGAGTCGGGACAGTGCTGCGAACAGGACATCACGCGACAGGACGGAAAACCTGAAAGTTTGCGCACCAGAATCCACGCAAGCAGGACAGCACAGTCAGCAGAGATCATGGCAGGAGCAGGTGGAGATGGAGAATGCCAGTCTGAGAGAGCTTGTGGAAGACCTGCGCTCGGCTCTCCAGAGCAGCGACGCTCGCTGCATGGCTCTCGAGGTGGCTCTGAGGAGGGAGCGTCTGTACTCACCTGGCAAAAGCTCTCCACAAATCACTGAAAGGCAAACCTGCTTTGCTGGCAGCGAGCCCAAACTGAGGCAAACCAAACAAACCAGGCTCACGAAGGACCTGCTCCGAGAGCTAGAGCTGATCCGTGCTTCACGTGACGGCCAGCTGGAGGAGGCGATGAGGTTCAACCAGAGGCTGGAGGAGGAGCTTATGTCGGCGTATGGCGAGGTCAGCAGGCTGGAGGAAACAGTGGCGAGGCTGAGAAGAGAGAGCGCTGAGATCAAGAGGAGAGCGGAGGAGGCGAGAGCGGCTCTCGCTGCAGGCCTGGCGAGGGTCAGAGACATGCAGGACCAGGCGCAGCAGGTCACGCCACTGCAGGAGAAAGTCCAAAACCTCGAGGCAGAACTGGAGACATTCAGATCTCGGTGCACCTGCAGGGCTGAACATGAGAGAGGACCCGGACCTCCAGTTGAGTCTGTGGAGCCCACAGCACGTGTGATTCCCACAGGCCGAGACGAGATGCTCATCAGAGGAGAGGAAGCCTTGCAGAGGGCAGTGGAGGGCCGGGCAGCCtcagatgaggaggaggaggtgagggTGAAGGAGGAAGGCCAGTGCTGTCTGCTGGAGGTGAAGCGACTTATTAACAAACTTCACAACTGTGCAAAGGGaTGTCAGAAGATGGCGTTGTGGCATCTGCTCCTGTCACAGAACTCGACAGGACATTATAGCAATCAGATCGGCTGCACCGGACCACCGGAGACAAAGACGAGGGGACGAAGGCACCCCATGCTTCTGGATGAGAAGAAAACAGATAAAAGAATCTCTCGGAGAACCCTGGGTAAAATCCTGCTGAACACGCTAGATCTGTGCAACACAAAAGGCCAAGAATCGATTCCCATCTTCCAGGTCGTGGACGCTCTTTGTCAGCAGCTGGTCTCCAGCgagctggtgtgtgtggagggagaCGTTACAACGTGGCGAGGTGTGAATCCGCATCACCAAAACACCACAAACTCCCTCCTCATCTCCTGCTGAGAGACTCGTCTACTTCATCCAGGGAAGTGGTGTGAACGAGTGAAGGCTTTGGGATGTTGATCAGAAGCTCAAGTCCCAGAGTCTTTGAGGAAGATACTTAAATCCTTAGAGTGTGACTTGCTTTGgttaaaagcatcagccaaatgagtgaatgtaaatgtaaatctgtgtGTATAATCTGTATCTAATCAGTTTCTCGGAATTATATGTAAGATTAAAAGAACCTCATCCTAGAAGAAAAAACATATTGTCTCACTATCTAATGAAAACATAGTGGTtgccattaaaatattttcccaTCAGGATCTAATCGTTTTTCCAGGATTCAGTTACAGATCCATATCCGTGTATTATGGTAACGCCTTACTCACAAATGACCACTGATCCATGccggaaaaagaaaaacaaatatcgGAATACTCTTAATTGGAATTGTCGTAAACATCTTCCCATCAGGATCTAATTATTTTCATGGTTTCCAAAACGTTTTTATTCCGTTGCATGTGCATGATGTCGAGTGTGTATTACGTAATTAAAGGAGTGATTTTCTTAATTGCACGGCAGATTGCGTTGccgcatcacagctccaggatcccagGTTCAAACACAGGGAATCTCAGactctccctgtgtccatgttgGTTTCATAAGGATTCTCTGCTTTCATCCGAACatccaaaaacataccagtaggtggactggtgaaCTTTGAATGAGTGTGAGCCATCAATAGATATACATCGCATCTAGGGTGTGTTGTCACCTCGTGCCTGGTGTGTTCCTGGAATAAACTCCaggatactgaagatgagtgcTTTCAGCTCATTAAAACAATCACCATTAGAGACCATTGGTTTACTAGAGGATGCATTTGGATTCCATTAGAAAACCATCAGACATATCTAGAATGTGTCACAACTGTTAAGGTTTCCATTACATAATCCAAACTGACTTAATGGTTTCCATCAGATTCGTATAAATTTCTAGTTACTATTAAATACCACTAGAACCCAATTCAGTGCACGATTCCAtcagaataaaatcaaatcagcCATCAGGAACCATTAGGAATGATACACATTCCATTAAATTACCATTCCAGACCATTAGGAACCACTACAACTCCCTGCTTTCAGTATGACGTCACTAAAGTTAATCCTCAAGCCTGGTATGCAGTATATCATGCTTTACAGGTTACTCTAAGTCACAGAATGGAATGTGTGCTTAAAATGTTTCAGATCTGAGCCTCTTGCTACGATGTCAAGCACGGTGGGAAATCTCCATACAGAAcattttatattcttaggtCTGAAGattgttttttgtgttaaaaagcAATTTCTAGAggtgccaataattctggagttgagtGTATGTTCTGCCCTTGTTTAGCACACTGGCGAGGGACGTTTCGACACATCTGTGTGAGAACAATGAAGGTCAGTCATTTTCCCAGAgcctgcctctgtctctctcataagAGTGTTTTGTTCATGACCCCACAGGACACTCGGGTCCAAACGTCTCCACGTTCCTCCACATATCTATTTATTACACATCTCAGTCTTAACCGTTCCCTAAGCTGTGTTTCGAGTCTGTCCGTTACGTCTGTGCatcagtttttatttctgatgatTCTTCTCTCCCTCTATAGAGCTATGTGACatttatgataaaatgatattcATGATGAAGTGCCTGCAAAACAGTAGCAAGCACCCATGTCCTTAAGTGTTCTTAATTTAAATAGTCTACCTTTATACATACTACATTGTCTTGCTTTTGAATTGGCATGGTTGTAGATTTTAGGCTACAAACATTATAAAGCAGCAGATATTTCAAGGTGTAAGATCAGTCCTAACCCATTAGGGAGTTAGTTTAAAAGTATGTTGGTTTggactcttttttctttttacttcaaTCT

Function

NR:

description
EF-hand and coiled-coil domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932834.2 True 3952 mRNA 0.49 8 18790926 18803902

Neighbor

gene id symbol gene type direction distance location
LOC113537968 sox13 coding upstream 49369 18708742 ~ 18741557 (+)
kif17 kif17,LOC108438632 coding upstream 120467 18654169 ~ 18670459 (+)
sh2d5 sh2d5 coding upstream 136887 18646711 ~ 18654039 (+)
hp1bp3 hp1bp3 coding upstream 145408 18637593 ~ 18645518 (+)
pdrg1 pdrg1,LOC107550337,LOC107580937 coding upstream 226115 18560022 ~ 18564811 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding downstream 169060 18972962 ~ 19037668 (+)
mfsd4aa LOC108254837 coding downstream 238680 19042582 ~ 19059543 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding downstream 534030 19337932 ~ 19343063 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 545846 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 731509 19535411 ~ 19762252 (+)
G310425 NA non-coding upstream 158982 18631715 ~ 18631944 (+)
G310421 NA non-coding upstream 173925 18616690 ~ 18617001 (+)
G310420 NA non-coding upstream 175272 18613515 ~ 18615654 (+)
G310416 NA non-coding upstream 188346 18602378 ~ 18602580 (+)
LOC113538055 NA non-coding upstream 189202 18596516 ~ 18601724 (+)
G310547 NA non-coding downstream 96358 18900260 ~ 18906623 (+)
LOC117599928 NA non-coding downstream 110392 18914294 ~ 18964490 (+)
G310649 NA non-coding downstream 256433 19060335 ~ 19066486 (+)
G310679 NA non-coding downstream 277632 19081534 ~ 19082121 (+)
G310680 NA non-coding downstream 278467 19082369 ~ 19085507 (+)
snrpe snrpe other upstream 98912 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 1527263 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2289242 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 2991036 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 4265950 14514592 ~ 14524976 (+)
G310681 LOC108254836 other downstream 283123 19087025 ~ 19087806 (+)
svbp NA other downstream 690856 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 704287 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 965081 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 1044565 19848467 ~ 19868481 (+)

Expression


Co-expression Network