slc2a10 (slc2a10)


Basic Information

Item Value
gene id slc2a10
gene name slc2a10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20654185 ~ 20661689 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932837.2
TCTACAGCCCTGACTGTGCTGAGGAATGATGAAGGAAAGTTtgaaaaggatttttttgtattttaaagactgaatcttgtttgtttttgtgatgtcGCGCATCATGGACAGTGAACAGCGCAGAGAAGTGTAGATTAATACAGAATACAATTAAatcaatcttttatttattcattaaacagaagaagaagaagaagaagaagcagcggtgtgtttttctctccagcTGCTGCAGATCTGATGAAGCTCAGCACCGAGTTTCatctaaaataaaaccactggaTTAAGGTCTGTTGTTCTTCTGAATGAAACCCTGCTGCGGATTCAATCAGTCGCCATGAAGCTCTGAAGCTCTGAAGCTCCTGAACACAAAACCAACATGGGTTACTCTGTTGTAGCTGTCGCCGCTGCCGTATCAACTCTCGGAGGTTTGGTGTTCGGCTATGAACTGGGAATCATCTCCGGCGCTCTGCTGCAGCTCCAGGTCCAGTTCCAGCTGAGCTGTGTCCAGCAGGAGGCCGTGGTCAGCTCCCTCCTCATCGGAGCCGTTCTGGCTTCTGTTATCAGCGGCTGGCTGATCGACCGTCACGGCAGGAGGACGTCCATCTTGCTCAGTAACCTCCTGATCATCGGCGGGAGCCTGATCCTGAGTGTTAGCGTCTCGTTTCCGATGCTAATCTCTGGCCGTGTCATGGTGGGCTTCTCCATGTGCGTATCCTCAATGTCCTGCTGCATCTTCGTCTCTGAGATGGTTTCGCCTGAATGCAGAGGTCTGATGGTCACTCTGTATGAAGTCGGTGTCACGGTTGGGATTTTGCTCGCGTACGCAGTCAACTACGTCTTATCTGGAGCTCAGGACGGATGGAGGTACATGTTCGGGTTGGCCGTCGCGCCGTCATTTGCGCAGTTGGTTTCGATTTGGGTTCTGCCTTCTCAGCACACGCCGATCGTACAGCTCCTGAACGAGAGCGGTGAAAATGGGACTTTAAATGGAGCACGAACGCATGAGAAGGTGTACACAATCGTACATCTGTTTCAGCGCCGGGATAACATGCGCACCAGGACTGCGATCGGTCTCGGGTTGGTGGTGTTCCAGCAGTTCACGGGTCAGCCCAACGTGCTCTTCTACGCCTCCACCGTCTTTCAGTCTGTGGGATTCGAGAGCGACGCATCTGCCGTGTTGGCGTCGCTCGGCCTCGGGGTCATTAAAGTCATCGCAACATTAGCGGCGATGTTCTGCGCGGATAAAGTCGGACGGAGGCCGCTTCTGATTGGCGGATGCTCTGTCATGGCTGTCGGTTTGATGATTATTGGATTCCTGAGCAGACATTCGGAGTTTGATGCGGTGAGACACTGCAGCTCTCGTTTAAACAACACTGTGTTACCTGAGACTGGAAATAACACCGCTAGCGCTGGACGTTTGGACGCGACTGCACTTCCTCACGACGCAGGAAAGTTTAATTGGATTATTCTGTTCTGCATGATGGCTGTTGTCGCCGCCTTCTCCATGGGCTTCGGTCCAAtgacgTGGGTCGTGCTGAGTGAAATTTTCCCAGCAGATGTGCGAGGACGAGCGTTTGCCTTCAGCAGCTGCTTTAACTGGACGGCCAACCTGATCGTCACCTTCTCCTTCCTCAACGTGATAGATGTGATGGGTCTTTCCGGAACGTTCTTCGCGTACGGCGTGATCGCGGTAGCAGCCGTCGTTTTTATCTACCTCCTTCTACCAGAGACTAAAGGCAAAGCGCTGCAGGACATCGACAGGGAGCTGTGCCAAAGACGATTTCCTCACAGAGAAGAATTCTGCAGTGTTTTCCAGAGAAGACGATTTTCACCCGGATATCACAGAGTCTCCTGGACGAGTTCATCGATATAACGTTCAAAAAcctgaagttttattttaatgtgataaAATGAGCTGATAACGATGATAACGAGGTGATAATCATGTGGAACGTGTTGACAGAAAATCTTTGAagtttttattgtaataaagtTCATGATGCAGTTTTTTTGGTCTTGATCTGTTTACcagctgtttaatttttttt
>XM_026932838.2
TCTACAGCCCTGACTGTGCTGAGGAATGATGAAGGAAAGTTtgaaaaggatttttttgtattttaaagactgaatcttgtttgtttttgtgatgtcGCGCATCATGGACAGTGAACAGCGCAGAGAAGTGTAGATTAATACAGAATACAATTAAatcaatcttttatttattcattaaacagaagaagaagaagaagaagaagcagcggtgtgtttttctctccagcTGCTGCAGATCTGATGAAGCTCAGCACCGAGTTTCatctaaaataaaaccactggaTTAAGGTACAAATGCAGGTCTGAGCAGCAGAAACTGTCTGGGTGAAGATTAACAGCTGGAACAGCTGGACTCTGAGGGGATTTCTTACTGCACTGCGGGTCTGTTGTTCTTCTGAATGAAACCCTGCTGCGGATTCAATCAGTCGCCATGAAGCTCTGAAGCTCTGAAGCTCCTGAACACAAAACCAACATGGGTTACTCTGTTGTAGCTGTCGCCGCTGCCGTATCAACTCTCGGAGGTTTGGTGTTCGGCTATGAACTGGGAATCATCTCCGGCGCTCTGCTGCAGCTCCAGGTCCAGTTCCAGCTGAGCTGTGTCCAGCAGGAGGCCGTGGTCAGCTCCCTCCTCATCGGAGCCGTTCTGGCTTCTGTTATCAGCGGCTGGCTGATCGACCGTCACGGCAGGAGGACGTCCATCTTGCTCAGTAACCTCCTGATCATCGGCGGGAGCCTGATCCTGAGTGTTAGCGTCTCGTTTCCGATGCTAATCTCTGGCCGTGTCATGGTGGGCTTCTCCATGTGCGTATCCTCAATGTCCTGCTGCATCTTCGTCTCTGAGATGGTTTCGCCTGAATGCAGAGGTCTGATGGTCACTCTGTATGAAGTCGGTGTCACGGTTGGGATTTTGCTCGCGTACGCAGTCAACTACGTCTTATCTGGAGCTCAGGACGGATGGAGGTACATGTTCGGGTTGGCCGTCGCGCCGTCATTTGCGCAGTTGGTTTCGATTTGGGTTCTGCCTTCTCAGCACACGCCGATCGTACAGCTCCTGAACGAGAGCGGTGAAAATGGGACTTTAAATGGAGCACGAACGCATGAGAAGGTGTACACAATCGTACATCTGTTTCAGCGCCGGGATAACATGCGCACCAGGACTGCGATCGGTCTCGGGTTGGTGGTGTTCCAGCAGTTCACGGGTCAGCCCAACGTGCTCTTCTACGCCTCCACCGTCTTTCAGTCTGTGGGATTCGAGAGCGACGCATCTGCCGTGTTGGCGTCGCTCGGCCTCGGGGTCATTAAAGTCATCGCAACATTAGCGGCGATGTTCTGCGCGGATAAAGTCGGACGGAGGCCGCTTCTGATTGGCGGATGCTCTGTCATGGCTGTCGGTTTGATGATTATTGGATTCCTGAGCAGACATTCGGAGTTTGATGCGGTGAGACACTGCAGCTCTCGTTTAAACAACACTGTGTTACCTGAGACTGGAAATAACACCGCTAGCGCTGGACGTTTGGACGCGACTGCACTTCCTCACGACGCAGGAAAGTTTAATTGGATTATTCTGTTCTGCATGATGGCTGTTGTCGCCGCCTTCTCCATGGGCTTCGGTCCAAtgacgTGGGTCGTGCTGAGTGAAATTTTCCCAGCAGATGTGCGAGGACGAGCGTTTGCCTTCAGCAGCTGCTTTAACTGGACGGCCAACCTGATCGTCACCTTCTCCTTCCTCAACGTGATAGATGTGATGGGTCTTTCCGGAACGTTCTTCGCGTACGGCGTGATCGCGGTAGCAGCCGTCGTTTTTATCTACCTCCTTCTACCAGAGACTAAAGGCAAAGCGCTGCAGGACATCGACAGGGAGCTGTGCCAAAGACGATTTCCTCACAGAGAAGAATTCTGCAGTGTTTTCCAGAGAAGACGATTTTCACCCGGATATCACAGAGTCTCCTGGACGAGTTCATCGATATAACGTTCAAAAAcctgaagttttattttaatgtgataaAATGAGCTGATAACGATGATAACGAGGTGATAATCATGTGGAACGTGTTGACAGAAAATCTTTGAagtttttattgtaataaagtTCATGATGCAGTTTTTTTGGTCTTGATCTGTTTACcagctgtttaatttttttt

Function

symbol description
slc2a10 Predicted to enable transmembrane transporter activity. Acts upstream of or within circulatory system development and notochord development. Predicted to be located in endomembrane system; membrane; and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Is expressed in several structures, including fin; hatching gland; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in arterial tortuosity syndrome. Orthologous to human SLC2A10 (solute carrier family 2 member 10).

NR:

description
PREDICTED: solute carrier family 2, facilitated glucose transporter member 10

GO:

id name namespace
GO:0030903 notochord development biological_process
GO:0016020 membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08147 SLC2A10, GLUT10; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932837.2 False 2051 mRNA 0.49 6 20654185 20661689
XM_026932838.2 True 2144 mRNA 0.49 6 20654185 20661689

Neighbor

gene id symbol gene type direction distance location
si:ch73-267c23.10 LOC108255296 coding upstream 4012 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 32946 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 51121 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 77825 20546892 ~ 20576360 (+)
cnpy2 LOC108255003 coding upstream 115553 20534127 ~ 20538632 (+)
smug1 smug1 coding downstream 235291 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 371434 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 451745 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 476120 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 549563 21211252 ~ 21371670 (+)
G311444 NA non-coding upstream 70590 20579953 ~ 20583595 (+)
G311460 NA non-coding upstream 109632 20544021 ~ 20544553 (+)
G311471 NA non-coding upstream 132377 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 178498 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 180388 20472823 ~ 20473797 (+)
G311515 NA non-coding downstream 1079 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 4578 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 21142 20682831 ~ 20685069 (+)
G311506 NA non-coding downstream 23478 20685167 ~ 20690740 (+)
G311508 NA non-coding downstream 105389 20767078 ~ 20804924 (+)
errfi1a errfi1 other upstream 476913 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 785704 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 870260 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1137007 19508189 ~ 19517178 (+)
svbp NA other upstream 1155514 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 146169 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 208963 20870652 ~ 20882365 (+)

Expression


Co-expression Network