barx1 (barx1,LOC107727794,LOC107685643,LOC107691398)


Basic Information

Item Value
gene id barx1
gene name barx1,LOC107727794,LOC107685643,LOC107691398
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11794011 ~ 11797434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932863.2
GCAGTGCTACTGAAAGCGCAATCTTTTGCGAGCACTGATCCCCCTCTTTGTGGGCGAGGGTGTCATCAGGCTTTAGAGGAGGAGGGGCTTTGTGTGACAAGACCTCCTCAAGCGTGTGTGTTCTGGACTCAAAACTTTCGTGGCCAAGGTAACACACTGCTCTATTCCGTGGTGAGAGGATCAAAGTTCCTATTTCAGCTGTAAGGACTCGAGCATGTTTTAGCCATCGACAGGAGAAAAGGACGAAATTATTGCGTTCATGAGCACGGAGATCGgatatcacactttttatcaCGCATTTAGAAAACTCCCTTAGCCGTGTCCAGGATGGCTCCAGTTAACCGAGAGAGCAGGATGGATGTTTTTCCCTGTGCGCCTCGGGCAGACATGTGAATTTTGAAGCGCTACCTCGATGCGAATTTTTACGCACCATCGAAAAACAGGGACTCGAAGCACGGAAGAAGTGTGTCGCGTCCAGGAAGGCGCAGTCATGATGCAGCATCCTCTGGAGCTCGGGGCTCACTATTACCCTGCCGAGGCGCAGCAGGACCACAGGTCTCACCGGTACAGAAGCTTCATGATCGAGGAGATCCTCACCGAGCATCCGGACCACAAGGCCTCTCCTCCTGCCGGAGATTTACTCAAATTCGGAGTACACGCTCTTTTGTCGGCACGGCCGTACCCAAATCACTTAGCCGCCTGCTGTTTGTTTCACTCCTCAGTGCTGAAGGCAGAGCAGAGCGGCCTGCTGAAGTTCCCCGTGTCCCCGCTGTCGTGTTCTCTTGGGCCGCCGCTCGGCTCTGCGCTGCTCCCCGGGCCTCCGGGGCTCGGAGTGGGCTCGGCCTCGCACCACCTCCCGCTCGACCTGCACCTCCGCGGGAAACTCGAACCTGGAGCCGAGGCGCTCAGCAAGACCAAGAAAGGCAGAAGGAGCAGAACCGTGTTCACCGAGCTCCAGCTCATGGGTCTGGAGAAGAGATTCGAGAAACAGAAATACCTCTCGACCCCGGACAGAATAGACCTGGCTGAGTCTTTAGGCCTCAGTCAGCTGCAGGTCAAAACGTGGTATCAAAACAGaagaatgaaatggaaaaaaattgtATTGCAGGGAGGAGGGCTGGAGTCCCCCACCAAACCGAAAGGGCGCCCAAAAAAGAACTCCATACCTTCCGGGGAGCAGCTTTccgagcaggagagagagaggacgcGGGAGGCTGAGAGCGcatcttcatcctcttcatcatcgTCATCCTCTTCATCCTGTTCAGGCCAGTCTGAACCCGGGCAAGAGGAATAAACGCCACTCTCCGGCCATGTGAATCCAATGCGCTTTAAGGATGCACAGGCGAAAGGCCTCTCATGGATTGTTTCTTGTCGAAGTCGACGTTTTGGCACTTAAAAACTGATCCAGACAAGTCAAGTGGACCGAAATGATGTTTccattttgcttaaaaaaaaaaaacatggactgCTGCTTaatcttgtttttctctttaggAAAAATCCCGAGCAGGGTTGAGCAGAAATGGGGCTCTCACCTTTCTTAACACTTTCCATTGGAGAAGTCGCTTCGCAGGGACATTTTCACTGCAGTTCTTGTGCTCCGTGGTTTAACTATGTATgaataatatgataaaaaaaaattaaatattctttttacAGAGACAGATGattatgataattatttaatgaattacCAACGAATGTAGTTAGTAAACCTGCAGAATTACTCTGTGAATTATTCTGATGCGGTTTGGTTTCGAGCAAATACAATGAATAGGCTGCATTATGGTATCGAATAAACCTATACTACCACATGCACACCATAAA
>XM_026932864.2
CTACTGAAAGCGCAATCTTTTGCGAGCACTGATCCCCCTCTTTGTGGGCGAGGGTGTCATCAGGCTTTAGAGGAGGAGGGGCTTTGTGTGACAAGACCTCCTCAAGCGTGTGTGTTCTGGACTCAAAACTTTCGTGGCCAAGGTAACACACTGCTCTATTCCGTGGTGAGAGGATCAAAGTTCCTATTTCAGCTGTAAGGACTCGAGCATGTTTTAGCCATCGACAGGAGAAAAGGACGAAATTATTGCGTTCATGAGCACGGAGATCGgatatcacactttttatcaCGCATTTAGAAAACTCCCTTAGCCGTGTCCAGGATGGCTCCAGTTAACCGAGAGAGCAGGATGGATGTTTTTCCCTGTGCGCCTCGGGCAGACATGTGAATTTTGAAGCGCTACCTCGATGCGAATTTTTACGCACCATCGAAAAACAGGGACTCGAAGCACGGAAGAAGTGTGTCGCGTCCAGGAAGGCGCAGTCATGATGCAGCATCCTCTGGAGCTCGGGGCTCACTATTACCCTGCCGAGGCGCAGCAGGACCACAGGTCTCACCGGTACAGAAGCTTCATGATCGAGGAGATCCTCACCGAGCATCCGGACCACAAGGCCTCTCCTCCTGCCGGAGATTTACTCAAATTCGGAGTACACGCTCTTTTGTCGGCACGGCCGTACCCAAATCACTTAGTGCTGAAGGCAGAGCAGAGCGGCCTGCTGAAGTTCCCCGTGTCCCCGCTGTCGTGTTCTCTTGGGCCGCCGCTCGGCTCTGCGCTGCTCCCCGGGCCTCCGGGGCTCGGAGTGGGCTCGGCCTCGCACCACCTCCCGCTCGACCTGCACCTCCGCGGGAAACTCGAACCTGGAGCCGAGGCGCTCAGCAAGACCAAGAAAGGCAGAAGGAGCAGAACCGTGTTCACCGAGCTCCAGCTCATGGGTCTGGAGAAGAGATTCGAGAAACAGAAATACCTCTCGACCCCGGACAGAATAGACCTGGCTGAGTCTTTAGGCCTCAGTCAGCTGCAGGTCAAAACGTGGTATCAAAACAGaagaatgaaatggaaaaaaattgtATTGCAGGGAGGAGGGCTGGAGTCCCCCACCAAACCGAAAGGGCGCCCAAAAAAGAACTCCATACCTTCCGGGGAGCAGCTTTccgagcaggagagagagaggacgcGGGAGGCTGAGAGCGcatcttcatcctcttcatcatcgTCATCCTCTTCATCCTGTTCAGGCCAGTCTGAACCCGGGCAAGAGGAATAAACGCCACTCTCCGGCCATGTGAATCCAATGCGCTTTAAGGATGCACAGGCGAAAGGCCTCTCATGGATTGTTTCTTGTCGAAGTCGACGTTTTGGCACTTAAAAACTGATCCAGACAAGTCAAGTGGACCGAAATGATGTTTccattttgcttaaaaaaaaaaaacatggactgCTGCTTaatcttgtttttctctttaggAAAAATCCCGAGCAGGGTTGAGCAGAAATGGGGCTCTCACCTTTCTTAACACTTTCCATTGGAGAAGTCGCTTCGCAGGGACATTTTCACTGCAGTTCTTGTGCTCCGTGGTTTAACTATGTATgaataatatgataaaaaaaaattaaatattctttttacAGAGACAGATGattatgataattatttaatgaattacCAACGAATGTAGTTAGTAAACCTGCAGAATTACTCTGTGAATTATTCTGATGCGGTTTGGTTTCGAGCAAATACAATGAATAGGCTGCATTATGGTATCGAATAAACCTATACTACCACATGCACACCATAAA

Function

symbol description
barx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cartilage development; pharyngeal system development; and positive regulation of mesenchymal cell proliferation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; mesenchyme; neural crest; pharyngeal arch; and posterior lateral line ganglion. Orthologous to human BARX1 (BARX homeobox 1).

NR:

description
PREDICTED: homeobox protein BarH-like 1 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002053 positive regulation of mesenchymal cell proliferation biological_process
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09361 BARX; BarH-like homeobox

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932863.2 True 1830 mRNA 0.50 4 11794011 11797434
XM_026932864.2 False 1797 mRNA 0.50 4 11794017 11797434

Neighbor

gene id symbol gene type direction distance location
fbln2 fbln2,LOC108254974 coding upstream 122552 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 210562 11543739 ~ 11583449 (+)
cfap92 NA coding upstream 520532 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 558750 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 653698 11107291 ~ 11140313 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 270190 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 379656 12177090 ~ 12185144 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 468271 12265705 ~ 12413095 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 620176 12417610 ~ 12427033 (+)
suox suox coding downstream 637075 12434509 ~ 12454321 (+)
G306199 NA non-coding upstream 39980 11752225 ~ 11754031 (+)
G306145 NA non-coding upstream 132590 11648300 ~ 11661421 (+)
G306106 NA non-coding upstream 250873 11542933 ~ 11543138 (+)
G305920 NA non-coding upstream 363966 11429819 ~ 11430045 (+)
G305903 NA non-coding upstream 383715 11409531 ~ 11410296 (+)
LOC113537887 NA non-coding downstream 39904 11837338 ~ 11843605 (+)
G306284 NA non-coding downstream 125035 11922469 ~ 11922676 (+)
G306286 NA non-coding downstream 127427 11924861 ~ 11925433 (+)
G306290 cass4 non-coding downstream 132278 11929712 ~ 11930201 (+)
G306295 NA non-coding downstream 139750 11937184 ~ 11937411 (+)
G306103 NA other upstream 278198 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 312911 11480669 ~ 11481100 (+)
G305869 NA other upstream 467651 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 478575 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 572471 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 660167 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1876920 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2382349 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2717158 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3959456 15756890 ~ 15799890 (+)

Expression


Co-expression Network