LOC113538050 (LOC108254737,LOC108281062)


Basic Information

Item Value
gene id LOC113538050
gene name LOC108254737,LOC108281062
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17105866 ~ 17107916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932873.2
TATAAATAGCAGAGTACTCAGCTTATGCTTTATGCATAAAGCCTGCATTTAACAGGAAGCATCTTTAACAATTTTGTTACCTGCTGCTGACAATTTTCTCgTTCACATTAAAAGTAAGAACATGTCATACCTGGCAGACATCCTTATAATTGGTGGACAAGGAGGAAatccttttaattttaatggtaCTGGAAATGGAGCTACATTGAGAAAGATCTGGGTGTGGGCCGGTGGCTGGCAGATAAAAGCCGTCAAGGTTTGGCTTACTGATGGCCAGTCCAGGGAGGTTGGTCAACCTGGAGGGAAGTTTTCAGAATTTACATTTGAGGATGGAGAGCATTTCACCTCCCTTTCACTTTGGGGAAATGGAGCTGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCGCTCCCGGGAGTTCTTTGCACACATGACAGACTGGGGGCTGAAAACAGAATATCCAGTTGATGTGGGTTCTGGGATCTGCATGGGAATCACAGGACGTGCAGCTGATGATGTTGATTGCTTAGGCTTCATTTTCATCAACACTGTCAAGTCTACTGTGCTAACAAATGTTCAGTATCCCACACTTCATGATGTGATACCCAATGTGGCTGTTGAGGAAATCAAATCCATGACATACCATAATAATTCTACTGAAACTCAAGAATATCGAATTGAAACCTccaaaaaaatcaccaaaaagTCATCCTGGTCTGTTTCCAACAACCTTGAGTTCACATTTAGCATGGAGGTGAAGGCAGGAATTCCTGAGGTTGTGGAAGTATCAACTGGTTTTGGCTTCAAAGTGGGAAGTGAGAGCTCATATGGTTTGGAGAACActgaggagaaaatggagctGTTGTCATTTCCTGTCAAAGTCCCTCCAGGGAAGACCGTGGATGTGGACATTACAATTGGCCGGGCTATAGTTGATCTCCCCTACACTGGCATAGTCAAGATTACCTGCTATAATAACAGTGTGCTGGAGTTTAAAACCAGTGGAACCTACAAAGGCCTCACTTACACTGGTGGAAAAGTGGTTGTGAATGAATCGGTAAAAAAGCTCGCTGAGGGTCCAGAGGGTGTGAATTGATTTGCAAAACTTATTTCAAAAGTGAAATACATAATGAATCACATTAAATAATTGCTAAACAgtttaataattgttttttcttttatgatattcatgttcattttagCTTGTTTTAAATAACTTGATTATTAGCTTTTCCTAATGTTTTtgtt
>XM_034314379.1
CCTGCATTTAACAGGAAGCATCTTTAACAATTTTGTTACCTGCTGCTGACAATTTTCTCGTAAgTTCACATTAAAAGTAAGAACATGTCATACCTGGCAGACATCCTTATAATTGGTGGACAAGGAGGAAatccttttaattttaatggtaCTGGAAATGGAGCTACATTGAGAAAGATCTGGGTGTGGGCCGGTGGCTGGCAGATAAAAGCCGTCAAGGTTTGGCTTACTGATGGCCAGTCCAGGGAGGTTGGTCAACCTGGAGGGAAGTTTTCAGAATTTACATTTGAGGATGGAGAGCATTTCACCTCCCTTTCACTTTGGGGAAATGGAGCTGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCGCTCCCGGGAGTTCTTTGCACACATGACAGACTGGGGGCTGAAAACAGAATATCCAGTTGATGTGGGTTCTGGGATCTGCATGGGAATCACAGGACGTGCAGCTGATGATGTTGATTGCTTAGGCTTCATTTTCATCAACACTGTCAAGTCTACTGTGCTAACAAATGTTCAGTATCCCACACTTCATGATGTGATACCCAATGTGGCTGTTGAGGAAATCAAATCCATGACATACCATAATAATTCTACTGAAACTCAAGAATATCGAATTGAAACCTccaaaaaaatcaccaaaaagTCATCCTGGTCTGTTTCCAACAACCTTGAGTTCACATTTAGCATGGAGGTGAAGGCAGGAATTCCTGAGGTTGTGGAAGTATCAACTGGTTTTGGCTTCAAAGTGGGAAGTGAGAGCTCATATGGTTTGGAGAACActgaggagaaaatggagctGTTGTCATTTCCTGTCAAAGTCCCTCCAGGGAAGACCGTGGATGTGGACATTACAATTGGCCGGGCTATAGTTGATCTCCCCTACACTGGCATAGTCAAGATTACCTGCTATAATAACAGTGTGCTGGAGTTTAAAACCAGTGGAACCTACAAAGGCCTCACTTACACTGGTGGAAAAGTGGTTGTGAATGAATCGGTAAAAAAGCTCGCTGAGGGTCCAGAGGGTGTGAATTGATTTGCAAAACTTATTTCAAAAGTGAAATACATAATGAATCACATTAAATAATTGCTAAACAgtttaataattgttttttcttttatgatattcatgttcattttagCTTGTTTTAAATAACTTGATTATTAGCTTTTCCTAATGTTTTtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932873.2 True 1251 mRNA 0.41 2 17105866 17107916
XM_034314379.1 False 1214 mRNA 0.41 2 17105907 17107916

Neighbor

gene id symbol gene type direction distance location
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding upstream 5436 17086777 ~ 17100430 (+)
LOC113537900 LOC108254753 coding upstream 27817 17076546 ~ 17078049 (+)
LOC113537897 flnb,LOC107657976,LOC107712990 coding upstream 30222 17006607 ~ 17075644 (+)
slmapa slmap coding upstream 107047 16944464 ~ 16998819 (+)
LOC113537970 arf4,LOC108254967 coding upstream 192890 16910405 ~ 16912976 (+)
LOC113537879 NA coding downstream 3627 17111543 ~ 17115161 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding downstream 25971 17133887 ~ 17135114 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding downstream 55856 17163772 ~ 17164608 (+)
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding downstream 61094 17169010 ~ 17170004 (+)
LOC113538082 LOC108254746 coding downstream 71706 17179622 ~ 17180679 (+)
G309208 NA non-coding upstream 89622 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 105842 16903181 ~ 17000024 (+)
G309389 NA non-coding downstream 64346 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 136784 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 168524 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 275872 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 811620 17919536 ~ 18018096 (+)
amigo3 amigo3 other upstream 604182 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1305976 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2580890 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2629049 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3412954 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 153063 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1579481 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1979109 19087025 ~ 19087806 (+)
svbp NA other downstream 2386842 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2400273 19508189 ~ 19517178 (+)

Expression


Co-expression Network