c20h1orf158 (c21h1orf158)


Basic Information

Item Value
gene id c20h1orf158
gene name c21h1orf158
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17380999 ~ 17387719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932884.2
CAGCCTGACGGAACTCCTGATGTAACGTAAAGTATTTGGGAAATCGCAAACCAAATACTTTTTACCATCAGAAAATCATGTTccaacaaacagtgaaataaaataataaaatccaataaaataCAGTGGGTGGGTAGAAAGAAAGGCTATATCGTAGTTTATTTcgaaaaattacacatttttaaacgaTGATCTATTTTGGTCTGTCCTCTCATTTAAGGCGTTGGTGTGCAGTACAAGCCTTGCAGACGAAGCCTCATTTCTAAATTCAAAGTGATATTCATCATGAGGAATCTGAGCTTCTTTCTTAATGAGTgtttaccgtttctatagtaacacacccctccctcctcccccCTGCTGTGACAGCTGCTATCATTTTGCTTCTCCATCCGAATGTAAATGTGCCAGAGTTTCTGTTGCATGAGGACACGGTGAAGTTGCATTATGCAGGAAAAGGACATGGCGTATGATAAATGGAAGCAGCCGGGCTGGAGGATTGAGCAGAAATACTCCAACAAAGTGCTCATAGGCAACTGGGCCGAGGAGAGACTGCAGttcTCTCGGGAGTGTAAGACAGCAAACAGCAGTAATAGGCTGGACTTCAGGCCTCAGACAGATCACAGGCCGGATGTGATTGTGAGACGGACAGCGCTGCGTCGATCTGAGGGTCTTCCCACCAGACTCCTCTTCTCCCACCATAACACACCCACCTCACATTACCTGGTCACTCTATATGACGAGTCTTATGGTCGACGTAGCTCCCCTGGCCTTCCCGAGCTCCGCACATGGCACACTGACAAGATGGGTTGGGTCCCTGAGAAGTCAGACCTTCCGCTTCATGGCCCTCCGACCAACTACGGTCTGACAGAGCTTTGGCGAGCGCAGCTGGAGAAGCAGCGGGCGGGGTCGCACATGCTCAGTATGTACAGAGCGGCGTATCCAGTGCACCCCACAGATGCATTCTGTCAACCTCGGCATGCCAGAGTGCCACGCCTGACCTCCATCAGAAAGAATGACCTGGAAATAAACCACATGCCAGGAAATGCTGCTAGACCAATGTCACCCCTGCCATGTGTGTAACCCTGTCtttatcatatttattgttCGGAAAAATGcacatatatatcatattagTTATTCTAAATAGCATCTATATACAtcttaataaagaaaaagatattgtaaatattgtccatgctgttatttaacactTACCTTTCCTGGGATACAATTTTGAGAATATCTAGACTAGATTTTGAGTTTTAAAGTACAGCCATTAATAAGTACAGTttggagttactgctaccaccagCAGGAAGAtggacgttgattattttcacatcctgaagtgttttatttctcttataccacagcaatttaccagcgATTACCAACAAACTGTTCACATATcacacattttaaccatttatttttacgtttaatgttgtggaacgtctttGAGAaaagatagttcctgttattatgtacagtatgttatagCATCTGTAAACAAGTCTTTTCACTTACGagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932884.2 True 1535 mRNA 0.43 4 17380999 17387719

Neighbor

gene id symbol gene type direction distance location
aadacl4 aadacl4 coding upstream 71 17376959 ~ 17380928 (+)
lrrc38b lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684 coding upstream 62342 17297720 ~ 17318657 (+)
LOC113538082 LOC108254746 coding upstream 200320 17179622 ~ 17180679 (+)
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding upstream 210995 17169010 ~ 17170004 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding upstream 216391 17163772 ~ 17164608 (+)
LOC113537884 NA coding downstream 637922 18025641 ~ 18028630 (+)
rnf207a LOC108255220 coding downstream 642474 18030193 ~ 18034462 (+)
rap1ab rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898,LOC108413334 coding downstream 715118 18102837 ~ 18118319 (+)
LOC113537957 LOC100304639 coding downstream 1002786 18390505 ~ 18398072 (+)
LOC113537956 NA coding downstream 1015819 18403538 ~ 18409560 (+)
LOC117599872 NA non-coding upstream 103167 17276440 ~ 17277832 (+)
G309461 inpp1 non-coding upstream 132924 17244700 ~ 17248075 (+)
G309389 NA non-coding upstream 196461 17172262 ~ 17184538 (+)
G309208 NA non-coding upstream 364755 17015636 ~ 17016244 (+)
G309201 NA non-coding upstream 411562 16968396 ~ 16969437 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 531817 17919536 ~ 18018096 (+)
G309970 NA non-coding downstream 576705 17964424 ~ 18058167 (+)
G309981 chd5,LOC108414967 non-coding downstream 588896 17976615 ~ 17977091 (+)
G310007 NA non-coding downstream 653163 18040882 ~ 18043514 (+)
G310084 NA non-coding downstream 734311 18122030 ~ 18122255 (+)
LOC113537865 LOC108280979 other upstream 117336 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 879315 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1581109 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2856023 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2904182 14179783 ~ 14476817 (+)
snrpe snrpe other downstream 1299678 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1699306 19087025 ~ 19087806 (+)
svbp NA other downstream 2107039 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2120470 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 2381264 19768983 ~ 19783925 (+)

Expression


Co-expression Network