her15.2 (LOC108254744,LOC108254745,LOC108431592,LOC108431591)


Basic Information

Item Value
gene id her15.2
gene name LOC108254744,LOC108254745,LOC108431592,LOC108431591
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17169010 ~ 17170004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932887.2
ATCTGATTCGCCCTCCTCAGAGCAACACAACTCTCCTTCTGAAACGATGGCTCCTACCTACATGCCTTCCGCTGACTACTCAAAGCTTTCCAACAAGGAAAAACATAAAcTAAGAAAACCAGTGGTGGAAAAAATGCGCCGTGATCGCATCAACAACTGCATCGAGCAGCTTAAGGTGATGCTGGAGAAAGAATTCCACCAGCAAGACCCCAACACAAAGCTGGAGAAAGCTGACATTCTGGAGATGACTGTCGTCTTCCTGAAGCAGCAGCTGCAAAGCCAGATCTCAGCTCCTCAGAAAGCTCACTGTGACGGTTACTCTCAGTGCTGGAGGGAGACCGTCAACTTCCTGTCTGCCAAATCCAAACTGGACGTGACACTTCAGCATCTCAACCGCTGTCAAGAAGACCAGAGAGCACAGAAAGATTTCCCAGTGTCTCCACGTTCCTCCCAGATCCACCAGGCTCCAGTCAAGCAGGAGATCAGCGTAAACAGAGCTGTGTGGAGGCCTTGGTAGAGACACTGAGCACTTTGACTCTCTCATGTTAACCAGATGGTAGTTTCACCATCACTAAGTAGGAGTGTATTTTCCATTCCAGTGATTCAGATCATTTTCTCATGTTGGGTTTTGATCAGAATTCtaaatgtatgtttattatatgtCCTCCCTATGGGTGGGGCAAGGTTATCAATTAACCTATGTTATTTATCTTCATATTGAAGAGTTACACATCTTCTGATTTGTCTTAACTccagttatttattaaattattctaattaactgtatttgttacttttttatatatataaaagttttgagtatgtatttcttttttacttaATGTTGCCTTAAATGTGACTATGAATAAATTCACTAAATATA

Function

GO: NA

KEGG:

id description
K06055 HES5; hairy and enhancer of split 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932887.2 True 883 mRNA 0.42 2 17169010 17170004

Neighbor

gene id symbol gene type direction distance location
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding upstream 4402 17163772 ~ 17164608 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding upstream 33896 17133887 ~ 17135114 (+)
LOC113537879 NA coding upstream 53849 17111543 ~ 17115161 (+)
LOC113538050 LOC108254737,LOC108281062 coding upstream 61094 17105866 ~ 17107916 (+)
abhd6a abhd6,abhd6a,LOC107657977,LOC105904082 coding upstream 68580 17086777 ~ 17100430 (+)
LOC113538082 LOC108254746 coding downstream 9618 17179622 ~ 17180679 (+)
lrrc38b lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684 coding downstream 127716 17297720 ~ 17318657 (+)
aadacl4 aadacl4 coding downstream 206955 17376959 ~ 17380928 (+)
c20h1orf158 c21h1orf158 coding downstream 210995 17380999 ~ 17387719 (+)
LOC113537884 NA coding downstream 855637 18025641 ~ 18028630 (+)
G309208 NA non-coding upstream 152766 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 168986 16903181 ~ 17000024 (+)
G309389 NA non-coding downstream 2258 17172262 ~ 17184538 (+)
G309461 inpp1 non-coding downstream 74696 17244700 ~ 17248075 (+)
LOC117599872 NA non-coding downstream 106436 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 213784 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 749532 17919536 ~ 18018096 (+)
amigo3 amigo3 other upstream 667326 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1369120 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2644034 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2692193 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3476098 13674354 ~ 13692912 (+)
LOC113537865 LOC108280979 other downstream 90975 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 1517393 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1917021 19087025 ~ 19087806 (+)
svbp NA other downstream 2324754 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2338185 19508189 ~ 19517178 (+)

Expression


Co-expression Network