prph (prph)


Basic Information

Item Value
gene id prph
gene name prph
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12474056 ~ 12485975 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932892.2
GTGTTCCTCACACGGAGGTCCTATTGCTCCTGCTGCCCAGCTTCGTCCACTGCCAGACATCCCTGCACAGAAGCAGAAAGATCCTTGAGAGGGAGAACGAGAAGTGgttttggaaaaaagaaagccaTCATGAGTCAATCGACGATCCGCACGTCCTACCGCCGCACTTTTGGTGGACCTACCCCTATGTCCGCCATGCCCTCCTACACCTCATACTCGTCCCGTTACCTGGGCCCGGCTCCAGCCGCCATGTCCACCCGGACTTTCCGGGTTCGCTCCAGTGCTCCAGCTCCGTCAGTTCCTCGTCTCTCCTATGACAAAGTGGACTTCTCCTTGGCTGATAGCATCAACCAGGAGTTCCTCAGCACGCGCAGCAATGAGAAGCAGGAGCTGCAGGAGCTGAACGACCGCTTCGCAAGCTTCATCGAGAAAGTGCGCTACCTGGAGCAGCAGAATGCCATGCTCACCCACGAGCTCAACCAGTACAAGGGCAAACAGCAGCAGGGCCAGCCAAATCGCGCCAGCCAGCTTTGCCAGCAGGAGATGAGGGAGCTGCGCAGACAGGTTGAGCTCATTGGGAAGGAGCGTGACCAGATCCAGGTGGACAGAGATAACATGGCTGAAGATCTGGCCTTGCTCAAGCAGAGGTTGGATGAGGAGACTCAGAAAAGACAAGATGCTGAGAACCAACTGGTCCTGTTCCGAAAGGATGTGGATGATGCCACTCTGGCCCGTTTGGAGCTGGAGCGGAAAATCGAGTCTCTGATGGATGAGATTGAATTTCTCAAGAAGCTGCATGATGAGGAAATCCAAGATGTGCAAGTGAGCTATGAAACCCAGCAGATGAAGATGGAGGTTGAGGCCACAGTCCGTCCCGACCTGACTGCAGCTCTGAGGGACATCAGGGCTCAATATGAAAGCATTGCAACAAAGAACATGCAGGAATCCGAGGAGTGGTACAAATCCAAGTTTACTGACCTTACCGACTCAGCCAAGCGCAATGCTGATGCCATGAGACAGGCCAAGCAGGAGGCCAACGAGTTCAGGAGGCAGATTCAGAGCCTCAACTGTGAGATCGACGCCCTGAAGAGCACGAATGAGGCTCTGCTGAGGCAGATGAGGGAAATGGAGGACCAGTTTGGAGTGGAGGCTGGAAATTACCAGGACAGCATCACCCGTCTGGAGGAAGAGATCCGCCACCTGAAGGACGAAATGTCCCGTCACCTGAGGGAATATCAGGACCTGCTTAATGTCAAGATGGCTCTGGATATTGAGATTGCCACTTACAGGAAGTTACTAGAAGGAGAGGAAAGCAGAATTGCTATTCCTGTCATGAACATAACGTCAATCGGTATGCGCAATGGCGATTATGACCTGCCCGCTGATGTTGGACATGGCAAAAAAGTTGTGATCAAAACCGTTGAGACCCGTGATGGAGAGGTGGTGAAGGAGTCCACGAAGGAGAAAGACACCCCACGAGACTCTAAGGAATCTAACTGAGATGTTCGAGAATTGAGGATCCAAGAATGTGCAGGCTGGAGTGGgacataaacaaaatataaagaatgaaatttttaaagtgtttaagcCTTTAATCTGATATTCACTactgatggggaaaaaattaatGTTAAGAAAATATTGGCATTCATTTTGACTCAATACTGTGATTCTGAATGGGGTGCATACTATCACTGCGCAATGGTGCTAACAACATAGCCTTAACCATAACATTTAAGCAAACTGTCAGATGCTTTCTATATCATCTTCATTCACACAATTCAATATATAACCAGTCAATACTCGTCATATACTGATAAAAAACATGGTTTTAGACCAAATGAAGTCAACCAGTCACCTTTTAAACACCAGTGGTGGCCTTTATTTACAGCAAAACTTTTTTACATCTTTCATGCATGTGAAAATTAAACCCATGGCAAGGCGGAAAGATATCCATTTACTCTGCTTTCTCATTTACCTCTATAGCTTAACATTTACCTCTATAGCTTAACATTGTGAGTAGTCATAATTTGGTGATATTATTCGTGTAATGTAAGCACTTTTGGCCTCACCAGGCAGCTTCAAATAGAATGTGATTTACTACTCAAAATCCAGGAGTCTCACCCCATTCACTTCAGTCTGAGCAAATGAATGTGAGTACTGCAGCCTTACTGAGAATGAAAAGAAGCTAATGTTTGTGGAAATAAAGCCAAGTGAAACAAAAA

Function

symbol description
prph Predicted to enable structural molecule activity. Acts upstream of or within tissue regeneration. Predicted to be located in type III intermediate filament. Is expressed in nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 1. Orthologous to human PRPH (peripherin).

NR:

description
plasticin-like

GO: NA

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932892.2 True 2225 mRNA 0.47 9 12474056 12485975

Neighbor

gene id symbol gene type direction distance location
suox suox coding upstream 19735 12434509 ~ 12454321 (+)
mcrs1 mcrs1,LOC107696040 coding upstream 47023 12417610 ~ 12427033 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding upstream 60961 12265705 ~ 12413095 (+)
nmur3 LOC108281099,LOC108439501 coding upstream 288912 12177090 ~ 12185144 (+)
alpl alpl,LOC107691326,LOC107685635 coding upstream 377300 12067624 ~ 12096756 (+)
timeless timeless,LOC107689440 coding downstream 10334 12496309 ~ 12527278 (+)
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding downstream 47261 12533236 ~ 12562741 (+)
pmela pmel coding downstream 99150 12585125 ~ 12595797 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding downstream 113094 12599069 ~ 12606053 (+)
sarnp sarnp coding downstream 122378 12608353 ~ 12626608 (+)
G306479 NA non-coding upstream 25682 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 178327 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 184299 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 319506 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 321887 12143548 ~ 12152169 (+)
G306503 NA non-coding downstream 86447 12572422 ~ 12573759 (+)
G306744 NA non-coding downstream 311773 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 418233 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 710500 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 802814 13288789 ~ 13293439 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 11520 12457601 ~ 12462536 (+)
G306103 NA other upstream 958243 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 992956 11480669 ~ 11481100 (+)
G305869 NA other upstream 1147696 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1158620 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1188379 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1693808 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2028617 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3270915 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 4003386 16489361 ~ 16501684 (+)

Expression


Co-expression Network