si:ch73-267c23.10 (LOC108255296)


Basic Information

Item Value
gene id si:ch73-267c23.10
gene name LOC108255296
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20633750 ~ 20650173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932903.2
AGCAAAGCGAAGCTCCCTCGCGCGCGCTCTCACTGCAGGACCAATCAGGAGCGAGCTTTAGAAACTCTAATAGAAATAATTGAAGCTTTGTTGAGGATTTTGAGTTCGTGTAGGTGTTAAGAGAGATCAGACCCAAGATCAGACCCAAGATCTGACCCAGGATCAGACCCGGGATCTGACACGGTTCTGTGATCTCGCGTGCGCGCTGGAGGAGGATCATGGGAGCGACTTTGGGGACTTTCAGCCTCCTGAACTGGgctcCGTGTCTGTGTGGCTCGGCGACATGTTTGGCATGTCGATTTTGCTCGAAATGTAAGAACTCAATAGTGACTCGCATCATTTACGCCTCGATCCTGTTAATCGACACCATCATCGCCTGCATCATGCTGTCACCCAGCGTCGAGCACCAGATGAAACGGATCCCTGGATTTTGTGAAGACGGCATGACGTCCAGCAAGGCAGGAGTTTTTCAGTGTGAGACTTTTGTGGGCTACAAAGCTGTGTATCGTCTTTGCTTTGGCATGAGCATGAGCTTCTTGGccttttttctgctcaccatcaACATAAAGAGCAGCAGAGACCCTCGAGCTGCAATTCACAACGGcTGCTGGTTTCTCAAAATCGCAGTCATTATCGCGCTCACTGTCGGCGCCTTTTACATTCCAGAGGGACAATTTTCCTACATTTGGTTCATGGTGGGTGCATTTGGAGCgttcttcttcatcctcatccaGCTGATCCTCCTCGTGGACTTTGTGCACTCGTTGAGCGAGTCGTGGCATGACAAGAAGGAAAACGAGAACGCAAAGCTGTGGGGTTGTGccttgGTGAGTGTAACGTTACTGAACTACTCTCTGTCGATCACCGCCATCACACTCATGTGGATTTTTTACGCTCAGCCTGTGGAGTGTGTACTCAACAGGTTCTTCATCAGCTTCAACCTCATACTGTGCTTCATAGCTTCAGTGATCTCCATTCAGAAGAAAGTTCATAAACGTCTTCCCGCTTCTGGACTCATGCAGTCGTCCTTCATCACTCTGTACACCATGTACCTCACCTGGTCAGCCGTGACAAACGAACCAGAAAAATTGTGCAATCCCAGCCTGCTGAGCTTTTTCCAGCAGGTCGCCAATCCCAATATCTCTTCAACAAACCAAACCATCGTCGACCCCCCAGAGCATCCTTATTTCTTATGGGAGGATACGCAAAGCATCGTGGGATTGTTACTGTTTGTCTTGTGCCTTTTATACTCGAGCATTCGCTCGTCCAGCACCAGTCAGGTGAACAAACTCCTGCTGACTCCTCCAGAAGCCGTGCTGATAGAAGACTGTTCCACAGGAAGCCTCGGAGTCTCAGAGGGTCCGAGACGAGTGATAGATAACGAGAGAGACAGCGTGCAGTACAGCTACTCGTTCTTTCACTTCCAGCTCTTCCTCGCGTCGCTCTACATCATGATGACGCTCACAAACTGGTACAGGCCTGATGCTAACTACAgagacatcacacacaagcGAGGACCAGTTTGGGTGAAAATCTCGTCCAGTTGGGCTTGTCTCTTCCTCTACGTCATGACTCTGATCGCTCCCATCATCTTCAAAAACAGAGACTTTCCATAGCCACTTTATCGCAACTGATTTAACGTAACGCTTTTACTCTTATATggttttaaatcatgtttttttttttaagattttttctgacacattttactgttttttctgttacagttttcagtgttaaagaaatattgtgaattttctctcattttcttaaGATGTTTTATGTCAATTTTTTCTTAcaagattttacattttagcaATATTATCACTTTTTCACTCCAGAGATTTTACAtatcatttgtaaaatattatgacaattttttaaaaaacattttacgtTTTTCTCTTGAAGGTTTAATGTAAAGTTGAAAAAATATCGTGACAatttttatataactttatataaaaactcgacattttgtcatgtttttcttaCGGGATTTTACTTAtggtttaaattttaattttcttgagTTTGACAAACATAATGACAATTTTTGCACCAGacaatttgtcatgtttttttcttatgagCGTTTATGTAAAGTTTGAGAAACAgtgataatttttttcttaataagtTTTATATCACAGTTTTTATCAGGATTTATGTAACGTTTGAGAAATATTGTGACAATTTTTATGAGATTTTCTTACATTTCTATTTTCCTCTATTGTGAGATTTTACataaaaagtttgagaaataacgttacaatttttttcttaagacATGTTGCGTCATATTTTCACCTTACAAAACTTTATGGAAAGTTTGAGAAATATTGTGGCAAGGTTTTCGTAAGACGTTTTACATGACCCTTTTGTGAGGTTTTAAGTAACTTTTGAGAAATGCATTTTTTCCTAAAGTGTTTTGCGTAGGTTTTTCACCTACAATATTTTGCATTAGTTTtctttaaagacattttatataacagtttcCTGTTAGGAGATTTTATTTAGagttttatcttttaaaaaattctttaagAGATGTATCATATTTCACATAtcatttttacttattattttttgtgtaaGAGATTTTATGTAGCTTGTTTCGTTACTCATGTCTGGACCTTTTACAGTTGAAACATAGTCGTGACTAAAACCGTCCTTTTTTACGCATATTTTTACCTGGACGTCTTCACACTGGAAATATAGACATGACCACAGAAATATGGAACAAAATATTGCCTTTAGTAGTAACAAacagaaatcatttttttaaaatgtttttgtttttagcgtCTATTTTACTGACGTAGCACTTTTTCTCTCGTTGTTATTCTTGTGCCATTATTGCgtattgttttaaatgaaatgtttatcttggacgggggaaaaaaaacacaaacggATGTTAAAAAGCTTTTCAGAAAGCTAAATAcgtttttacacttttactgaAAAATTTTGTCACTAAATgacatgctgttgtttttgACTACTTTTCAATATTACGCTGACTTCATGTCAGAATGTCGAGATGTAATTACGAGACGACGATCCTGAGATGTTGTGAGatatctacacactcaggagtgAACTGTTtccttaatatttaatatttaatattttaaggaCACCAAAATGGGTACATAATGGGCCGTTATAATAGCTAGTAGgtagctaaaaaaaattttttttaaatcttctattgctgttttttttaaggctCAATTCTGCACAGAACTAAACTAACCTGCACTACACTCTtaatgatgatgtcattagAGGAACGCGTAATGAAATGTATAGAGTTAAAGATTCCTGACGTTACACGTCCTTTAGCGTCAGTCGGCGCTGCTGTTTTTTCGCTTCTTTATGTTTTCAAACGGTGCTCGCGAGTTTGATGATGTAAACGTTCTTTACGCTAGCTGAATTTGTACTTATTGTCGTCGTGGCGTGACGTGATGTGACATGAATGCGCTAGAAATGACGTCATAATATCGTATTACATGTAATTCTGGAGTGATGTAATAATTATGGACTGTATGTTACGTTTGTGTCTCGCTCactgaacaaacacaaaacaaaatatatacgTATTTTATTTGCTTTCCATTTATCGTAGTGTAAAACTGACCGTTTTATAAACACTTCACTTAAactgttaacatttttattttttttaaacacttgtCCAATAtttgaaccacacacacattctataaAACCAAATCAATAAATTCTAAAgtaaaaaagtctttttttaaaatgaaatccttCTTTAATTATtccaggtcttttttttttttttttaatttttacttcaTCATGACTTTTTTCTTAACTAGACCAACAGCTCTTTCAGAttcctctttcatttcttttatctGATCTGTAatagtcaaataaaaaaattatattggtTTAAGTAATAATTGTATTCTTCATAATACTTAGACAATGTGTAATTATGCACCTTTTCCCCCTCATACAACTGACTCGTATATTTAcactaattaatatttttatttatttcatacttgcttttttatttgtttaattcaggcacaaacaaaactgtaaatacacaattaattttttgtgaataatttcCATACCAAAGCCTTTTGAgttctttatttaacattatttgtaaacgACTCTTTATCAGACAATGTTGTTCAAGTTGCTTTTTTATAAATTGTGGCAAAAGTGAtttgcttttttctgttttaagtctgttttttctcttc

Function

NR:

description
serine incorporator 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932903.2 True 4262 mRNA 0.37 10 20633750 20650173

Neighbor

gene id symbol gene type direction distance location
LOC113537838 NA coding upstream 12511 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 30686 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 57390 20546892 ~ 20576360 (+)
cnpy2 LOC108255003 coding upstream 95118 20534127 ~ 20538632 (+)
nab2 LOC108255101,LOC108431520 coding upstream 126566 20495896 ~ 20507184 (+)
slc2a10 slc2a10 coding downstream 4012 20654185 ~ 20661689 (+)
smug1 smug1 coding downstream 246807 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 382950 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 463261 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 487636 21137809 ~ 21149284 (+)
G311444 NA non-coding upstream 50155 20579953 ~ 20583595 (+)
G311460 NA non-coding upstream 89197 20544021 ~ 20544553 (+)
G311471 NA non-coding upstream 111942 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 158063 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 159953 20472823 ~ 20473797 (+)
G311515 NA non-coding downstream 12595 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 16094 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 32658 20682831 ~ 20685069 (+)
G311506 NA non-coding downstream 34994 20685167 ~ 20690740 (+)
G311508 NA non-coding downstream 116905 20767078 ~ 20804924 (+)
errfi1a errfi1 other upstream 456478 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 765269 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 849825 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1116572 19508189 ~ 19517178 (+)
svbp NA other upstream 1135079 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 157685 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 220479 20870652 ~ 20882365 (+)

Expression


Co-expression Network