alpl (alpl,LOC107691326,LOC107685635)


Basic Information

Item Value
gene id alpl
gene name alpl,LOC107691326,LOC107685635
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12067624 ~ 12096756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932911.2
ATGCGCCCTCATTATGCATAGCGGATTTTTGTCTGTGCGCGTGCTTCAGCCGGCATTATAACAGCGTTCGCGCACCACCGGGTGAAAAGCACAATCCCAGCCACAGGAAACGCGGGATAACCAGGAGCTTGAGAAGGAGAAGACTTGAAAGCCTTGACGCCTGAGAAATGATGTATAAAGAGAGCATGATTAAGGCTATTACACTCATCTTGTCTTGCCTGCTCTGGCAAGTCCAGGGGAAGCCACTATTTCCTGAACAGGAGAAGGATCCTGAATTCTGGAACTCATGGGCACAACGTACTCTGGTGAAGGCTCTGGGGGAGGAGCGCAACACAAACATTGCCAAGAATCTTATCCTCTTCCTGGGAGATGGTATGGGTGTACCTACAGTGACAGCGGCGAGGATCTTGAAAGGACAGCTGAGCGGCCACTATGGAGAGGAGGGTCAGCTGGAGATGGACAAATTCCCCTACGTGGCCCTCTCTAAGACCTACAACACGAACGCTCAGGTGGCAGACAGCGCTGGCACGGCCACAGCATACCTGTGTGGCGTGAAGGCCAACGAGGGCACGGTGGGTGTGAGTGCAGCAGCTGTGAGGGGCCAGTGTAACACCACGCAGGGCAACGAGGTCACCTCCATCCTTAAATGGGCCAAAGATGCAGGGAAATCTGTGGGCATCGTAACGACAACACGAGTGACCCATGCCACCCCGAGTGCAGCGTATGCCCACTGTGTGGACCGTGACTGGTATTCAGATGGAGATATGCCTGCTGAGGCAGTGCAGGAGGGCTGTAAGGACCTCGCCAGACAGCTCATTGAGAACATTCCCAATATTAATGTAATCATGGGTGGTGGACGGAAGTACATGCTTCCTAAAAACATGTCAGACGTGGAATACCCCAGCGAAAAGAAGCATAGTGGGACACGCAAAGACAGCCGAAATCTGATCCAGGAATGGACTGACAGAACAAAGGACAAGAGGGGTCTCTATGTTTGGAACAAAAGGGAACTCCTTTCAATAAATCCCTCTTCTGTTGACTATTTACTGGGGCTATTTGAGCCAGGAGACATGCCTTATGACCTGGAGAGGGACAGCGACACTGATCCTTCCCTCACCGAGATGGTGGATGTGGCTATACAGATCCTGAGAAAAAACCCTAAGGGCTTCTATTTGCTAGTAGAAGGTGGGCGCATTGATCACGGACACCATGAAGGCAAAGCAAAGCAAGCCCTGCATGAGGCCGTGGAAATGGACCGTGCCATCGGTCGAGCTGAACTCCTCACCAGCATCCACGACACCCTGACTGTCGTTACCGCTGATCACTCGCATGTCTTCAACTTTGGAGGCTACACAGTGCGAGGAAACTCCATCTTTGGACTGGCACCAATGGTGAGTGATGTTGACCAGAAGCCCTTCACATCCATTTTATATGGGAATGGCCCCGGGTTCAAGCTCATCAATGGTTCCAGGGTCAACGTCTCCACTGTAGATTATCAGGAAAACAACTATCAAGCCCAGGCAGCCGTTCCGTTAAGCATGGAAACTCATGGAGGTGAAGATGTTGCCATTTTCTCCAAAGGGCCCATGGCACACTTGCTTCATGGAGTGCAAGAGCAGAACTACATCCCCCATGTCATGGCCTATGCAGCCTGCATCGGCCAGAACAAAGACCACTGCCCCTCGGGCAACAGCTCTGCTCCTTCAGCCACAACAGTCCCTCTCACTCTAGCTCTACTAATTGTAGTCTCTTGGTTATTGTGCTGAGCCCTCTGCTTTGCAAACTTACTTACAGATTTACTTAGAGACTTTATTATCTGAGTTCCAACTGAtggattttatatcattttttttaaaaacagtgtcaATTTTTAAGTATCTTTGTACCTCATTTTACACTTGGGGATCACTGCTCACACATTTTGAAGAGATATATAGATGGATATATAGAAAGTGATATATAGATGAATGACTGACTTAAGACTGATaacatgaaaatggaaaattaatTTCTCCTGTAGTACATAACAACTTtggcttatttttttaaattaacattggCTTAATGCACTGTCAAATCGAagcaaaaaaaagctgttttaaaTTTAGTTGTTAAATGTTAGTCACAATTTCTTATTATCTACTAGATAGTATCTTAATTCCAATGCTCTAGCTGGTATTTTCAGGCTGTAGAGCTGTAGATACTCACCAATTCTATATAGTTTGAATGTTAATGATAATGCTTAATTATTTGTTGTTAGGAGTATAAAAAAATCTACCAAGACTATGATGGAGCTATGCACACAGTTTTCAGTGTGCTGGCATGTTTGTAGAGAATGATCTCAGATTTGAACTGTCATTATCCTCTCTATGACCTTAGTTGCCTCTGATTGTCACACCATGATTTATGGCCTTCAAATTTGCAAAAGGTTCTCTCTCTTAGTTCTCCTATAAGACTTCTCACAGCTGAAGCATTGACTTGACCATGAATTTTCTACTCTCAAATTTCAAGCACAGTTTCTTCAATTTTTAGTTGTTTTGACAATATGAAAATTACATCTGAAATCAGTCATTGCTCACTAATAATATTCTTGTTGatataaaactgtaatgatTGTCAGTGTGCattcaaacctttttttctcaAGGCACGCCTGTGTTTGTAAGTTTGTCTAGTCAGTGTCTAATTTGAATCAGCTGTGCTGGTGGTGGAAATGATCAAACACAGTGTACTGGTGTGTCTTGAAGAAGAGAAGTTTGGGAATCAAAGATGTGTTCtcacaaaatgtcaaaaatctTTGGAAAAATTAACAATGAAATATTATTGTTATGTGCATTTATTCCCATGCCATATAGAttattacaaacaaataaacacatgatACGCATATAAAGTGTTTCTATCATACTCTTTTAGGtggcctaagacctttgcacaatactgtacagTTACAATCCTCAGTATTCCCAGATGTTAAAGGATACCAGTCTAAATCAAATGtcccaaaaataataatgtttcccTGTCCAAAAAGTGAGTCATGGTTTTTCTTCTGTACTATCCTGTGGAGGGTTCTTCATGAAAGAAACATTGCAGATAGGATTCTTTGATTAgatggatctttttttttaatgatgccTGTAACTTTCTCAGTCATTCTAAGAATTGCCTTTGGCAAGTCTCTTTGCCCAGTAAATTGAACTGACCTGTGAAATGAGCTGTGTACGCATGTTTCCTAACCACTAGTATGTTGCTAGAGGGAATTCTATTAATGTGTTCTTGATTACAACAATAGGTATAATCAAacaatatttgcatatttgtcacagACATGAAGATACTGGCTTTTTTGTGAAGTGATGCACaattattgaaataaatgaaggCAGAATGGGCCAAAGGTTTCA

Function

symbol description
alpl Predicted to enable alkaline phosphatase activity. Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be anchored component of membrane and integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; bone element; central nervous system; gut; and vasculature. Human ortholog(s) of this gene implicated in adult hypophosphatasia; childhood hypophosphatasia; hypophosphatasia; and infantile hypophosphatasia. Orthologous to human ALPL (alkaline phosphatase, biomineralization associated).

NR:

description
alkaline phosphatase, tissue-nonspecific isozyme

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004035 alkaline phosphatase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932911.2 True 3407 mRNA 0.43 12 12067624 12096756

Neighbor

gene id symbol gene type direction distance location
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 270190 11794011 ~ 11797434 (+)
fbln2 fbln2,LOC108254974 coding upstream 396165 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 484175 11543739 ~ 11583449 (+)
cfap92 NA coding upstream 794145 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 832363 11224148 ~ 11235261 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 80334 12177090 ~ 12185144 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 168949 12265705 ~ 12413095 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 320854 12417610 ~ 12427033 (+)
suox suox coding downstream 337753 12434509 ~ 12454321 (+)
prph prph coding downstream 377300 12474056 ~ 12485975 (+)
G306300 NA non-coding upstream 125331 11942035 ~ 11942293 (+)
G306295 NA non-coding upstream 130213 11937184 ~ 11937411 (+)
G306290 cass4 non-coding upstream 137423 11929712 ~ 11930201 (+)
G306286 NA non-coding upstream 142191 11924861 ~ 11925433 (+)
G306284 NA non-coding upstream 144948 11922469 ~ 11922676 (+)
G306432 NA non-coding downstream 46792 12143548 ~ 12152169 (+)
G306433 NA non-coding downstream 57539 12154295 ~ 12154550 (+)
G306452 NA non-coding downstream 188195 12284951 ~ 12289757 (+)
G306470 NA non-coding downstream 198613 12295369 ~ 12295729 (+)
G306479 NA non-coding downstream 340443 12437199 ~ 12448374 (+)
G306103 NA other upstream 551811 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 586524 11480669 ~ 11481100 (+)
G305869 NA other upstream 741264 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 752188 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 846084 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 360845 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1577598 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2083027 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2417836 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3660134 15756890 ~ 15799890 (+)

Expression


Co-expression Network