cdc42 (cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067)


Basic Information

Item Value
gene id cdc42
gene name cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19349748 ~ 19363983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932957.2
atTTCTGCTGAGTAAAATGGCGCTGTTCCGCTGAGGGCGCGTGCCCCTGCTCTTATGCCTAGGAAACCCCGTGCGCGAGCTGCCAACGCCCGGCgcagagaaacaaacagagcGGAATACGATCTTGAATGAGAAGAGTGGACtgttaaacaaaaacagagCACAGTTATGCAGACGATCAAGTGCGTTGTCGTTGGCGATGGTGCCGTTGGTAAAACTTGCCTATTAATCTCCTACACAACTAACAAATTCCCCTCTGAATATGTACCAACGGTCTTCGATAACTATGCAGTCACGGTTATGATTGGTGGAGAACCCTACACCCTGGGACTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCTCTGAGTTACCCCCAAACAGATGTCTTCTTAGTCTGTTTCTCCGTCGTTTCCCCTTCTTCATTCGAAAACGTCAAAGAAAAGTGGGTACCGGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTTGTGGGGACGCAGATCGATCTGAGAGACGACCCGTCCACCATCGAGAAACTCGCGAAGAACAAACAGAAGCCGATCACCCCGGAGACGGCCGAGAAGCTGGCCCGAGACCTGAAGGCCGTCAAGTACGTGGAGTGCTCTGCTCTCACGCAGAAAGGCCTAAAGAATGTATTTGACGAGGCGATTTTGGCAGCCCTGGAACCCCCTGAGCCCAAGAAGAAGCGTAAATGTGTGCTGCTATGAGcgcccttttctttctctctcccctcctttCCTCTGCTAAGGCTGGCCAACAGCTTTGTACTCTTAAAAAAGCaatgcctaaaaaaaaaaaagaagtgagttaaaacattttttttgctctgcaaTAAATATAATCTAAAGAATACcctacacacacgcgcacacacacagggcttgGATCAGTTTTTGAGCTCCGTATCATCATACCATAGATTAAGCGAGATTTACGTTTTAAAGGTGTTACTTCACGGTGAACCGCAGAGATGTGGATTTTGTCATTTAACCAAGTTTTTAACGGCTACTTGCTCACTGATGCGTGGGGTGGGTGCAGTTACTAGCATGAGAGGCTAGTAGTTTTGTGAATCCTCCTGTGTAGTTGGAGTTAAACTTCTAACCTCTACTTTTACACTAGATTGTCACCAGaagtgcttgaaaaaaaaaaaaaaaaataaaatcctcttTCTTTGCCAATATCCCCATGTCGTAGGCGGTTTGAAAGAGTAACCATGTAAATAAGAGCAGATTATAAAGGACTGATCACAAAGAATCGGGTTTTCTCACGCAGGGAACTTTTAACAGTGTTAGCAGAACAAGCGGCGTGTCCTAATGCATTGCCAGGGACcacagaagctttttttttttcttctcagaaaACTTGTAATGCATGGAGGTTTCCTTTACATAGGTTAACtacttctttaattaataataatgtaagcTGACAACATGTTGTAGACTCCACGTGTTTTTACCAAAATGTCCCCCTCCTCaccccctctttttttttgttgttgttttttttttttttttttttttttttttcttttcttttctttaatggTTGTCACTTTTTTGTGTTCTTCATTTATGGGCCGGATCCCAGCGAAACACTGATCCACCTGTTATTTAAAGGgcgacacacacaaaaaaaataaataaatagtgataAAAGATCAAATTGAACCTTCGCTTTTCCCCTCAATGACTTAACGGAACCATGTTTACTAGTGTATGAGTTGCCCAGGTGGATCAAGGTTGATCTGATTTCCTGTCGTTTATCActcgttttgttttgttttgttttcattcagtgtAAGACCAAATGCTATGTATGAAGTCTGTcctttgtactgtatatgcattcttttaaagattattaaacttataCCTTAATTGccttta
>XM_026932958.2
atTTCTGCTGAGTAAAATGGCGCTGTTCCGCTGAGGGCGCGTGCCCCTGCTCTTATGCCTAGGAAACCCCGTGCGCGAGCTGCCAACGCCCGGCgcagagaaacaaacagagcGGAATACGATCTTGAATGAGAAGAGTGGACtgttaaacaaaaacagagCACAGTTATGCAGACGATCAAGTGCGTTGTCGTTGGCGATGGTGCCGTTGGTAAAACTTGCCTATTAATCTCCTACACAACTAACAAATTCCCCTCTGAATATGTACCAACGGTCTTCGATAACTATGCAGTCACGGTTATGATTGGTGGAGAACCCTACACCCTGGGACTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCTCTGAGTTACCCCCAAACAGATGTCTTCTTAGTCTGTTTCTCCGTCGTTTCCCCTTCTTCATTCGAAAACGTCAAAGAAAAGTGGGTACCGGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTTGTGGGGACGCAGATCGATCTGAGAGACGACCCGTCCACCATCGAGAAACTCGCGAAGAACAAACAGAAGCCGATCACCCCGGAGACGGCCGAGAAGCTGGCCCGAGACCTGAAGGCCGTCAAGTACGTGGAGTGCTCTGCTCTCACGCAGAGAGGTCTGAAGAATGTATTTGACGAAGCTATCCTAGCTGCTCTCGAACCGCCCGAAACGCAGCGAAAACGGAAGTGCTGTATATTCTAAagtctcgttctctctctctctttattacGCCTAACTTCTCCCCCAGATGTTTGCTGCTTCCTAGTTTACCTCTTGCTCCTGATTGCTAACAAAAGAAGCTTGTCTTATGTTTCTTGCTTCAtattactgaagtgtgtgtttttttgttttgttttttttcctccctctctctctctctctctctctctctctctctctctctgtgcatttGTCTTAAGATTTCTTCCTTTTGCCATTTTCGTCACCTCTTGTATTAAATGGAGGTTGTTTTCTCCTCTCCAGTTGTGgagaattatttattattactaccaTTATTTTTAGTTTGCTGTAAACCTGTAACACCGATTAAGACACATGTCAATAGTTGCTTTCTCGTTTCTTCATTTCTGCTGTCTGAGAGAGTGGGCGGAGCCAAAGAGGTACACTGATCAAGCAGCTCAAACGCACTGCGCTCAAGTCTTTATCTTTTTCCTCTTCATTCCTTATttcaatgtattattttatactgCAATCATTGTATCATAGAAATTAAAATTCTGAACATAATATTAAGGCTACACCTTGCAATCAGGTGCCATTGATCAGGTGCACCGTCTTGGGATTTACTTATAATCTTGTGAAATGATTTGTGTCATTAATAAAGGTCAGCTAAAATCGC
>XM_034313986.1
TAGAAAAATTGTGTGGTGCATGAAGAAGGTGTGAGCGACTGGTTTTCGTCTTAACAAAGCATCTCAAATGACATCCGTTAAAAGTTAGCAGCAATGCTAACGAGTTTCTGGTAACCGATCTTGAATGAGAAGAGTGGACtgttaaacaaaaacagagCACAGTTATGCAGACGATCAAGTGCGTTGTCGTTGGCGATGGTGCCGTTGGTAAAACTTGCCTATTAATCTCCTACACAACTAACAAATTCCCCTCTGAATATGTACCAACGGTCTTCGATAACTATGCAGTCACGGTTATGATTGGTGGAGAACCCTACACCCTGGGACTGTTTGACACTGCAGGTCAGGAAGATTATGATAGATTACGACCTCTGAGTTACCCCCAAACAGATGTCTTCTTAGTCTGTTTCTCCGTCGTTTCCCCTTCTTCATTCGAAAACGTCAAAGAAAAGTGGGTACCGGAGATCACCCACCACTGTCCAAAGACCCCCTTCCTGCTTGTGGGGACGCAGATCGATCTGAGAGACGACCCGTCCACCATCGAGAAACTCGCGAAGAACAAACAGAAGCCGATCACCCCGGAGACGGCCGAGAAGCTGGCCCGAGACCTGAAGGCCGTCAAGTACGTGGAGTGCTCTGCTCTCACGCAGAAAGGCCTAAAGAATGTATTTGACGAGGCGATTTTGGCAGCCCTGGAACCCCCTGAGCCCAAGAAGAAGCGTAAATGTGTGCTGCTATGAGcgcccttttctttctctctcccctcctttCCTCTGCTAAGGCTGGCCAACAGCTTTGTACTCTTAAAAAAGCaatgcctaaaaaaaaaaaagaagtgagttaaaacattttttttgctctgcaaTAAATATAATCTAAAGAATACcctacacacacgcgcacacacacagggcttgGATCAGTTTTTGAGCTCCGTATCATCATACCATAGATTAAGCGAGATTTACGTTTTAAAGGTGTTACTTCACGGTGAACCGCAGAGATGTGGATTTTGTCATTTAACCAAGTTTTTAACGGCTACTTGCTCACTGATGCGTGGGGTGGGTGCAGTTACTAGCATGAGAGGCTAGTAGTTTTGTGAATCCTCCTGTGTAGTTGGAGTTAAACTTCTAACCTCTACTTTTACACTAGATTGTCACCAGaagtgcttgaaaaaaaaaaaaaaaaataaaatcctcttTCTTTGCCAATATCCCCATGTCGTAGGCGGTTTGAAAGAGTAACCATGTAAATAAGAGCAGATTATAAAGGACTGATCACAAAGAATCGGGTTTTCTCACGCAGGGAACTTTTAACAGTGTTAGCAGAACAAGCGGCGTGTCCTAATGCATTGCCAGGGACcacagaagctttttttttttcttctcagaaaACTTGTAATGCATGGAGGTTTCCTTTACATAGGTTAACtacttctttaattaataataatgtaagcTGACAACATGTTGTAGACTCCACGTGTTTTTACCAAAATGTCCCCCTCCTCaccccctctttttttttgttgttgttttttttttttttttttttttttttttcttttcttttctttaatggTTGTCACTTTTTTGTGTTCTTCATTTATGGGCCGGATCCCAGCGAAACACTGATCCACCTGTTATTTAAAGGgcgacacacacaaaaaaaataaataaatagtgataAAAGATCAAATTGAACCTTCGCTTTTCCCCTCAATGACTTAACGGAACCATGTTTACTAGTGTATGAGTTGCCCAGGTGGATCAAGGTTGATCTGATTTCCTGTCGTTTATCActcgttttgttttgttttgttttcattcagtgtAAGACCAAATGCTATGTATGAAGTCTGTcctttgtactgtatatgcattcttttaaagattattaaacttataCCTTAATTGccttta

Function

symbol description
cdc42 Predicted to enable GTP binding activity and GTPase activity. Involved in cell surface receptor signaling pathway; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of filopodium assembly. Acts upstream of or within several processes, including camera-type eye development; melanosome transport; and plasma membrane bounded cell projection assembly. Predicted to be located in midbody and plasma membrane. Is expressed in blastodisc; brain; eye; and pronephros. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
cell division control protein 42 homolog isoform 2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932957.2 True 1926 mRNA 0.42 6 19349748 19363983
XM_026932958.2 False 1402 mRNA 0.45 6 19349748 19361222
XM_034313986.1 False 1922 mRNA 0.41 6 19349965 19363983

Neighbor

gene id symbol gene type direction distance location
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 6685 19337932 ~ 19343063 (+)
mfsd4aa LOC108254837 coding upstream 290205 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 312080 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 545846 18790926 ~ 18803902 (+)
LOC113537968 sox13 coding upstream 608191 18708742 ~ 18741557 (+)
LOC113538092 camta1 coding downstream 171428 19535411 ~ 19762252 (+)
per3 per3 coding downstream 423838 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 451923 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 519843 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 640422 20004405 ~ 20022989 (+)
G310686 NA non-coding upstream 227692 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 236721 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 264241 19082369 ~ 19085507 (+)
G310679 NA non-coding upstream 267627 19081534 ~ 19082121 (+)
G310649 NA non-coding upstream 283262 19060335 ~ 19066486 (+)
G310828 NA non-coding downstream 197200 19561183 ~ 19561390 (+)
G310870 NA non-coding downstream 353098 19717081 ~ 19717329 (+)
G310882 NA non-coding downstream 447455 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 471696 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 475438 19839421 ~ 19848284 (+)
G310681 LOC108254836 other upstream 261942 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 657734 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 2086085 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2848064 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 3549858 15756890 ~ 15799890 (+)
svbp NA other downstream 130775 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 144206 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 405000 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 484484 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 755400 20119383 ~ 20177272 (+)

Expression


Co-expression Network