c20h1orf50 (c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729)


Basic Information

Item Value
gene id c20h1orf50
gene name c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19337932 ~ 19343063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932959.2
CGCAGGCTTGCAAAGTTGTTTTGCCGAATCAGTATATTTATCAGACTCGCTGGTTCTGAAACGTGAATGAAAAAAGAGGTTGAATGACACATTTGATAGTATTTTAGCTAGAATTAAATCTTAATATCAGCAAAATACAAGTGAACATTAGCGCTGCGAAATGGATAAAGCAGTCAGTTTACCGAATCAGCCTGACAACTTGAGCGCAGTCACACTGGTGGAAACCAACAGCAATCCAAACGGACTGGAGCTGGTGAGCTCTTATCACACCAACCGAGTCGGAGATCCCATGGACCTCGTCACTCTGGCTCAGCAGGTTCAGAAGGGAGACGAATTTGTCCGAGCAAATGCTTGCAACAGGTTGACCGTCATTGCCGACCAAATAAGATACTTGCAGGAGCAAGCGAGAAAGGTGTTAGAGGAAGCTAAGAGGGATGCTGATCTCCACCATGCAGCCTGCAATGTTGTGAAGAAGCCAGGAAACATGTACTACCTGTACACGCGTGAATCTGGCCAGCGTTACTTCTCTATACTCTCCCCGAAGgaATGGGGTCCTAGTTGTCCACACAAGTTCCTCGGCACTTACAAACTGCAGTACGACATGTCCTGGACTCCGCTAGAAGATGTTGAAAACCGGGAAGCTGAAATCAGTGTAATGGACAAACTCCTGAACAGTCAAATCGCTCTTCCATCCAGCGCAGAACCAAACTTCGAGGGTCTTCCAAACTGACCAgacactgagtgtgtttacatgtacaaCATAATCAGATAACTGCAATAAATTGAAATTAAGATTGtcaatttaaacacatttacaggAAATGAAGTAATCAGATAATGGGTGTACATGGACGAGTCAGTAGTCTGTAATCTGTTTCTGTACTAAACCTACAGAAGAACGGACGTGCTTTATTGTTTATATCGGGGGTTTGTGGTTGCAAATTACACACAATGCTGCCCTTCTTTGAGCCGTCTCaagttttaaaaagatttttagtgCATCAAGCCAGATTAACAGTATACATGCACCAAATAACctgattttaaacaaacatccaGACTCTATTATAAGCCTAATCCGATCTAAATGATCACACCATGCTGTTTACACGGCCACTTGAATGATCTAATAATTCAGATTATACTTATAATATCAGCATTAGTGTGCAATGATAAGGGGCTACTTTATAATGTGGTCATGAAAAAAGCCATTTTGGTTTTCTCAGATATGACTGGGATGAATTGGGACATGGGAATGTTCAGCACTACAcagtaaagtgtaaaatgttctgtatttaatattctgtggaaggagtctccagtgtcagtgctttgtaacatttttttttttttttaggtccaTAGTTCTAAGCTGTTGTTACTGTGTGTAATGATCTGCCCTAACAGTACAACACTGCTGCttgtaatttaaaaagaataaaaatgcaattgtccgattgtatttt

Function

symbol description
zgc:112255 Orthologous to human C1orf50 (chromosome 1 open reading frame 50).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932959.2 True 1466 mRNA 0.41 5 19337932 19343063

Neighbor

gene id symbol gene type direction distance location
mfsd4aa LOC108254837 coding upstream 278389 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 300264 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 534030 18790926 ~ 18803902 (+)
LOC113537968 sox13 coding upstream 596375 18708742 ~ 18741557 (+)
kif17 kif17,LOC108438632 coding upstream 667473 18654169 ~ 18670459 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding downstream 6685 19349748 ~ 19363983 (+)
LOC113538092 camta1 coding downstream 192348 19535411 ~ 19762252 (+)
per3 per3 coding downstream 444758 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 472843 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 540763 19883826 ~ 19894420 (+)
G310686 NA non-coding upstream 215876 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 224905 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 252425 19082369 ~ 19085507 (+)
G310679 NA non-coding upstream 255811 19081534 ~ 19082121 (+)
G310649 NA non-coding upstream 271446 19060335 ~ 19066486 (+)
G310828 NA non-coding downstream 218120 19561183 ~ 19561390 (+)
G310870 NA non-coding downstream 374018 19717081 ~ 19717329 (+)
G310882 NA non-coding downstream 468375 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 492616 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 496358 19839421 ~ 19848284 (+)
G310681 LOC108254836 other upstream 250126 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 645918 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 2074269 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 2836248 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 3538042 15756890 ~ 15799890 (+)
svbp NA other downstream 151695 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 165126 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 425920 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 505404 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 776320 20119383 ~ 20177272 (+)

Expression


Co-expression Network