LOC113538122 (LOC108255274)


Basic Information

Item Value
gene id LOC113538122
gene name LOC108255274
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20596752 ~ 20603064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932980.2
TTGGGCAGGTGTGCTGGAGAAGCGCGGAGTTGGTGGCGATGAGACAGAAGCTGCTGCGCGCTCAGATCTCCAGCTCTGTGTGGAATTAAACTCTCATTTCTACACATACTGTACGGATATCTTTACAAagCCATAGCGATGCCTTGCGTCGAGACCCAGTATGGAGCCCTGCCTTATGAAAGCAACTACTTCAGCCCTGATTTTCTAAACTCAGGACTCTCCAACAAGCCGGGCATGGACCTCAGCATCCAGAGGGAGCAGCTTTCTCCACCGTCACTGCCCGGCATCAACACTCTAGTGGGCCATTCTGGTGAGACTGACACCTTCTCTTGCCAGTTCACCGCTTCAGTCTCAGCCGCCATGAACACAAACGCACCTGGCGACATCCACAATGCATTAGTTGAAGGTTCAAGCCCACGTGGGGTTCAGTCTCCTTTCAAGCTGGATGACATCCAGGTGTACGGCTGCTACCCGGGAACCTTCACCTTCAGTTGTCTGGATGAAAGTTTGTCCTCGTGTGGATCCGACTATTACGGAAGCCCGCTTTCAGCAACTTCCTCACCTTCCACTCCAGGCTTCCAAAGCCATCCAAGTTCAACCTGGGAAAGTGCCTTCAGTCCATTTTCTTCCATGTCTTGGCCATCAGAGGTCACAGCTCTACACCAGCAGCCTTCCTTCTTTACGTTCAACACTCCGGTTGAGCAGCAGTCCCCAATCCGGGATCACCAACTGCAACTCTGTGACGAGGACACTTTTGGTCAACTTCACCAACCATCTCCATTGCATTTCCCACCCCTGGACCTTGAGCATGGGTGCGTGGACAGCCCGGTACTAAAGGTCGAAAGGGTCGAGGCTCATCTGTCTGCAAAACCACGAAATCCCAACGAAGGACACTGTGCTGTATGTGGGGACAATGCTTCCTGTCAGCACTATGGGGTTCGCACCTGTGAAGGGTgcaaagggttcttcaagCGCACTGTTCAGAAGAATGCGAAATATGTCTGCCTTGCCAATAAGGACTGTCCAGTTGACAAGCGACGGCGGAACCGTTGCCAGTTTTGCCGTTTTCAGAAGTGTCTTGCAGTAGGAATGGTCAAAGAAGTGGTGAGAACAGACAGTCTTAAAGGCAGAAGAGGACGTCTTCCATCAAAGCCCAAGAACCTTCCGGACAGCGTGACCCCTGTGAATATTACCGCCTCACTCGTAAGGGCTCAAATCGATTCCAATCCTACTCTGGCAAAACTGGATTACTCCAAGTACCAAGAAAACGTGAAGAACCTGTCTGAAAAGGTGGACGCCAATGACATCCAGCAGTTTTATGATCTCCTCACCGGGACCATGGAGGTTATTCAGAAATGGGCCGAGGCGATTCCTGGGTTCCGCACCTTCTGTCGTGAGGACCAGGAGCTCCTCGTGGAGGCCGCATTCGTCGAGCTCTTCATACTGAGACTAGCATACAGATCAAATCCCGAGGAACACAAACTGATATTCTGTAATGGTGTAGTGCTGCACCGCTCGCAGTGTGTACGAGGGTTTGGAGATTGGATTGATTCTATCATGGACTTCTCCCAGAGTCTCCATCGCATGAGCCTGGACGTAACATCGTTCTCCTGCTTAGCAGCACTCGTCATCATCACAGATCGCCATGGTCTGAAGGAACCCACACGTGTGGAAGAGCTTCAGAACCGCTTGATCTCCTGCCTCAGAACCCACATCACCAGCAGCAGCGCAGACCAGAGCAGATCTCAGCCGCGTCTGTCTCGTTTGCTGAGCAAACTGCCAGAACTGAGGACTTTGTGCACGCAGGGTCTTCAGCGGATCTTTTACCTGAAGCTGGAGGACCTGGTTCCTCCTCCGCCCATCGTGGAGAAAATCTTCATGGACACGCTTCCGTTCTGAACGGCGGACGAAACGCTGACAGAACTCTCGGGATAAACAGAAATACTTGACAAGATAGAAATCCATAACATTTCTGGAAGATAAAGTTTTTCAGCAAACAGTTCCGTTCTTACAAATGTGACTTTTCTAATAGCATTCTGTTGAGAACTGCAAGGAAAACACCAGGTTCCTTACATcatgtatgaaatattttttatgttggAGAACATTAGAGGGCATTTTCTACACTTTAATtagtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatggtttGACTTTATTGCTATGCaaatatctttatatattttttgaatgaTTTTGATGTAGATTTTAGTGTCAATAGGATTTTTTACAAAGCTTCTTTGTCAACACATGATGctgattttatattcattattatgaattattttcccagaaagcaaaaaagtaaaagtctttttttccaGCTGGA

Function

GO: NA

KEGG:

id description
K04465 NR4A1, HMR; nuclear receptor subfamily 4 group A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932980.2 True 2368 mRNA 0.48 7 20596752 20603064

Neighbor

gene id symbol gene type direction distance location
ankrd52b ankrd52,LOC108255001 coding upstream 20392 20546892 ~ 20576360 (+)
cnpy2 LOC108255003 coding upstream 58120 20534127 ~ 20538632 (+)
nab2 LOC108255101,LOC108431520 coding upstream 89568 20495896 ~ 20507184 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 131202 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 211093 20288994 ~ 20385659 (+)
LOC113537838 NA coding downstream 15227 20618291 ~ 20621239 (+)
si:ch73-267c23.10 LOC108255296 coding downstream 30686 20633750 ~ 20650173 (+)
slc2a10 slc2a10 coding downstream 51121 20654185 ~ 20661689 (+)
smug1 smug1 coding downstream 293916 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 430059 21033123 ~ 21046577 (+)
G311444 NA non-coding upstream 13157 20579953 ~ 20583595 (+)
G311460 NA non-coding upstream 52199 20544021 ~ 20544553 (+)
G311471 NA non-coding upstream 74944 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 121065 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 122955 20472823 ~ 20473797 (+)
G311515 NA non-coding downstream 59704 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 63203 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 79767 20682831 ~ 20685069 (+)
G311506 NA non-coding downstream 82103 20685167 ~ 20690740 (+)
G311508 NA non-coding downstream 164014 20767078 ~ 20804924 (+)
errfi1a errfi1 other upstream 419480 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 728271 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 812827 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1079574 19508189 ~ 19517178 (+)
svbp NA other upstream 1098081 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 204794 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 267588 20870652 ~ 20882365 (+)

Expression


Co-expression Network