LOC113538136 (LOC108255245)


Basic Information

Item Value
gene id LOC113538136
gene name LOC108255245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15029134 ~ 15040134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933007.2
GATAAATTCCTTTGAGCACTTTTCCCCCAGTTATCCGCTCACGGTTACAGAGTCTTATCCAGTCGGCCAAGCTATGTATTCCCCAGTGCACGGAATGCAGCAGCCTCTGTTATACGGGATGCAGACTCCAACGAACCCGGTGCCTGGATATGAGGGAATTGGCGGTGGGtttcttcctcctccacctATCCAGCCAATGCCAACTCCTGATTCACAGCCAGCACACGACTGGAGtaTTCCTGCTCTTACCAAGGAAGAGGCGCAAGAGGTTTTTCACAACTTTGCAACGAGCGATTGCTGTTATTCATCTGGTCCAGCTACAGATGGCGTGATCACCAATATGGAACAGTTCAACACCTACCGATATCGTCTGGAGACTTACACGGAATCCAGAAAAACAGAGTGGGCCACCAAGCCTTATGAGGGTCAGCCGTTGACTGCCTACACACAGATTGCTCCTAATCCATGGGAAGTCCCGGTTCAAGTGCCAGCCATGTTTACAAACTCTACTCAGGATGTCAAAGTGCCCTACACAGAATCAGTCAAGCCATGTGACACATGCTGTGCCTCGGGAAAATGTCAGTGCACCAAGTGTCATGGATCCAAGACTAAACAATGTTATATGTGCAGAGGCTCTGGGAAAGCTGCTGAAGGACAAGTCTGTGCAAAATGCAATGGCACAGGCGAAATGAAGTGCCCTGATTGTTCAGGTCAGGGAACAACTGAATGTGATACCTGCAAAGGGAAAAAGAAGCTATTAATGTATATCAAGCTTACAGTGGAATGGAAAAACAATGTTGACGATTATGTAGTGGAGCAGTCAAGTggtctggaaaaaaataaactggatGCAGTTACTGGGAAGAAGCTCCTCAAAGATACCAAGTTCATGGTGTATCCTTTGAATGGATTCCCAGAAATGAATGTGGCTCAAGCTTCTGATAGAATGATCAGGGAGCATCACAGCAAATTTTCCCAGACATCACGCATCATCCAGCAGCAACAAAGTGTTGAGCTGATTCCCATCACTAAGGTGACATACCGGTGGCAGGAAAAAGACtatatttactttgtttatgGTACTGAGTTAAAGGTCAAAGCAATTGACTATCCAGCTACATGTTGCTGcactataatttaaaaaacccAGAAGAAGCATAAGAAGCAACTTCCAGGATGAGTGACAttctctgttattattattatcatttaaagGAATGGTTGGGTAAAAAATtaactttaaacatttatagcaaatatagctgttttgacattttttgtgACTGAGTTTGCTTCTTATGTTTTGCACTTGAGCTACAAAAATGGAACAGTGTTGGTTCAGTGGTTAAAGTTAAATACGGACAATTGTGAGTTAAAATTTTGCCATAGagtcactgctgggcccttgagaaAAAACCTGCCCAGGTGTATGTTTGGAATGGATTCTGGTTCATTTTTAAGTTGCTTTTGATAGAAGTCATATCACTATTCTTGTAgtcttgtagtttttttttgtgcttatgacctatttattattttttgacagATTTTGAAAATTCAGAAAATGACTGTTGCAGTGCAAGTTGCCACTGAGTAGCGTGTGATTTTCTACCATTCATGTAGCCTGTGTCTAATGGCCTTAACTGTACAGTATTCTTAACAGTGAACTATGTCGTGAACAAATACACATCTTCTGTATCTACAATATGTGATTCAATATAATTGTCTATTACAAATAATGAACTCAATATATTCTTCTATTCACAGAATAATGTAGCCTTTATTTCTAGCCTTCTCACTCCTTTCAATCTACATTCTATCAGTTCATGGCTTAAACTGTGGTTGATTTTTCtcttgagaaaaagaaagtagtgGGCACTAAAAATGTAAGATGATTATGTCATTAAGATCTAGCACCATATCAATACATCATTGCTATCTGGTTGCACATCTGGTAGCCATGTCTGTCTATTATTTATTGCTAtgctatatttttataaatcatcTTTAGGCAATGTAAGAATGAGCTTTTACAGTAAGTACTTGGGAAGATGGGTTgcttctgtttatctgtttttaatgttaaaattaatctaaatatatgtatgtgctgCAGGTGTCATATGTATCTAACCATTGTCTCTgtatacataatttacatataaaCCTGTAAACCATAACGAGCGAGTGCTTAgcacacactgaaaatgaatactGACAATAAAAATGACCTGTCAAAGATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933007.2 True 2246 mRNA 0.39 12 15029134 15040134

Neighbor

gene id symbol gene type direction distance location
cand2 cand2,LOC107557972,LOC107691187,LOC107719941,LOC107720354,LOC107657311 coding upstream 5460 15012865 ~ 15023674 (+)
slc6a6b slc6a6,slc6a6b,LOC107719944,LOC107562730,LOC107676359 coding upstream 239285 14765186 ~ 14789849 (+)
LOC113537808 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 348273 14674490 ~ 14680861 (+)
podxl2 podxl2 coding upstream 367393 14630530 ~ 14661741 (+)
mcm2 mcm2,LOC107718478 coding upstream 400527 14616988 ~ 14628607 (+)
ssuh2.1 LOC108255262,LOC108436692 coding downstream 5410 15045544 ~ 15062000 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding downstream 24743 15064877 ~ 15126398 (+)
dock3 dock3 coding downstream 98217 15138351 ~ 15368130 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding downstream 335713 15375847 ~ 15382948 (+)
rbm15b rbm15b coding downstream 345160 15385294 ~ 15389128 (+)
G308018 NA non-coding upstream 228992 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 248376 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 265960 14760831 ~ 14763174 (+)
G307976 NA non-coding upstream 430522 14598393 ~ 14598612 (+)
G307971 NA non-coding upstream 439902 14589025 ~ 14589232 (+)
LOC113537967 NA non-coding downstream 353475 15393609 ~ 15407641 (+)
G308404 NA non-coding downstream 371965 15412099 ~ 15413822 (+)
G308707 NA non-coding downstream 833871 15874005 ~ 15875206 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 953261 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 981082 16021216 ~ 16022142 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 504158 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 552317 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 1336222 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2566598 12457601 ~ 12462536 (+)
G306103 NA other upstream 3513321 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 716756 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1449227 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 2220845 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 3647263 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 4046891 19087025 ~ 19087806 (+)

Expression


Co-expression Network