LOC113539438 (LOC108281051)



Basic Information


Item Value
gene id LOC113539438
gene name LOC108281051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6357452 ~ 6363685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026935179.2
GTATAATTTACTTACATATTTTATCCACCATTCCATTATCCACAATAGAAGCATTATATCTTCTTGCTAGGTCATAGAGGAGATTACAATAAAGAAGAGGGCACACTTTTTTGCCTCAACGAGCATGAATTGTTGCCAAGCTGAAATTGGAACCTTAGACACTTGTGGACAGCTTCTGATGTGgttttctcttgaagttgagAGGAGATTCTTCAGTTTTAGCCAGGTTTAGCCAGGCAGTATCACATGTATTAGCCTTCTTTTGCCGTCATGCCCAGAATACTGTTTTGGACCTTTGTGCTTCTGAAGCTCTTCACAGCCAGCGgtcAAGATTTCTTTCAGAGCCAGAGAGCTGGTGATTATGCAAAATCACCACATTCAGTCAAATATATTGTGTCTTTGCAAACTTCAAAAGGCCAGCATTTCTGTGCAGGAACCCTGGTGCATAAATATTGGGTTCTCACTGCTGCACATTGTAATACAGGATGTCTTGCACTCAGGGTGGATCAGATGATGATAGTGGCTGGAGACAACTTTCTTGGCAAGTATGAAGGGATGGAGCAGTATTCAAAACCTTACTCCATTACACCTCACCCACTGTACAACAAGAGCACCAATAATGCAGACATCATGCTCATTAAGCTCCGGGCTCCAATAAAGCTGAACAGGTACGTCTCGCTGGCTCCTCTTCCCAAACAAAACACAGGAGTGCTGCCTGGCCGGCTGTGCCAGGTGTACGATTGGAGTCCCACAAGGCAGGGCAGGGGTGTGAGCCTCCTTACACTTCACTCTGTAACTCTGCCAATCACCTCCACAGCTAAGTGTAATAGCAGCAGGTCCTACAATGGAAGCATTACAAGCAATATGATCTGTGCTGGCTACAGTACTGGAGGCAAGGATGCATGCAAGTGGGATGCTGGAGAGCTGCTTGTGTGTGATGGCCGACTTTATGGGTTCGCCTCCTGGGGAAACATCCGCAGGGTTACCGGGCTTCCAGGAGTCTATACGGCTGTGGCCAGGTTCCGAAGGTGGATAGACCATACCATCTACAGGTCCTTCACACGATGTTACAAGTACAGAAATCCACTGGCCTCAAAATCCACTTCGAGTGATGTGTAGTGTAACATATAGAATATACAGAATGTCATCATGTTACTaataaatatcttaaaaatgTAGAGCAATTTTAGAGTATCTGTGTAAAACAGAGTACAGTGTAAAAAGGTTAACAAAACtgtatatacatgcatacaaaCATA
>XM_034313989.1
ATACATTTAACCAGCTCCTTCTAACTAATCCACAGTCACCAGTCAGATGATACGCCTAGATTTTGTTGCAGAGATCAGGCCGCTTCCCACTGTGTTATCAGTTTATAATCTCTCTGTGCCCGTATTTCTGTGTTCATTCCTTCTCTCCTGACCTCTTTAAGCAGTGCTACAGAGCGAGTGCACATTATATGGCATTGTTCTGCTTTCTCCCCGGGGTTGATAGCTACACCAGGACAGGATGTCGTTCCAAACCAAGTTACAACCCAGCAGCTGAAATACAGCAGTCACGCCAGCACAAAGAGGCCAGTGCAGgtcAAGATTTCTTTCAGAGCCAGAGAGCTGGTGATTATGCAAAATCACCACATTCAGTCAAATATATTGTGTCTTTGCAAACTTCAAAAGGCCAGCATTTCTGTGCAGGAACCCTGGTGCATAAATATTGGGTTCTCACTGCTGCACATTGTAATACAGGGGTGGATCAGATGATGATAGTGGCTGGAGACAACTTTCTTGGCAAGTATGAAGGGATGGAGCAGTATTCAAAACCTTACTCCATTACACCTCACCCACTGTACAACAAGAGCACCAATAATGCAGACATCATGCTCATTAAGCTCCGGGCTCCAATAAAGCTGAACAGGTACGTCTCGCTGGCTCCTCTTCCCAAACAAAACACAGGAGTGCTGCCTGGCCGGCTGTGCCAGGTGTACGATTGGAGTCCCACAAGGCAGGGCAGGGGTGTGAGCCTCCTTACACTTCACTCTGTAACTCTGCCAATCACCTCCACAGCTAAGTGTAATAGCAGCAGGTCCTACAATGGAAGCATTACAAGCAATATGATCTGTGCTGGCTACAGTACTGGAGGCAAGGATGCATGCAAGTGGGATGCTGGAGAGCTGCTTGTGTGTGATGGCCGACTTTATGGGTTCGCCTCCTGGGGAAACATCCGCAGGGTTACCGGGCTTCCAGGAGTCTATACGGCTGTGGCCAGGTTCCGAAGGTGGATAGACCATACCATCTACAGGTCCTTCACACGATGTTACAAGTACAGAAATCCACTGGCCTCAAAATCCACTTCGAGTGATGTGTAGTGTAACATATAGAATATACAGAATGTCATCATGTTACTaataaatatcttaaaaatgTAGAGCAATTTTAGAGTATCTGTGTAAAACAGAGTACAGTGTAAAAAGGTTAACAAAACtgtatatacatgcatacaaaCATA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026935179.2 True 1259 mRNA 0.44 5 6358707 6363685
XM_034313989.1 False 1231 mRNA 0.46 5 6357452 6363685

Neighbor


gene id symbol gene type direction distance location
dnajc16l LOC108255153,LOC108436218 coding upstream 12197 6335684 ~ 6345255 (+)
LOC113539617 tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833 coding upstream 23340 6318875 ~ 6334112 (+)
LOC113539691 NA coding upstream 43982 6310692 ~ 6313470 (+)
LOC113539620 NA coding upstream 48756 6305677 ~ 6308696 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding upstream 159069 6160790 ~ 6198383 (+)
si:dkey-33m11.6 NA coding downstream 2371 6366056 ~ 6368120 (+)
ddx19 ddx19,LOC108255077,LOC107680447,LOC108411521,LOC107699345,LOC107572851,LOC107556002,LOC107714482 coding downstream 12750 6376435 ~ 6384403 (+)
acap3b acap3b,LOC108254862,LOC107714502,LOC107680440 coding downstream 43085 6406770 ~ 6464866 (+)
LOC113539488 ube2j2,LOC108436265,LOC101477245,LOC102783181 coding downstream 101632 6465317 ~ 6469788 (+)
si:ch211-160o17.4 hipk1,LOC108254861 coding downstream 109215 6472900 ~ 6486160 (+)
G303181 NA non-coding upstream 6356 6350192 ~ 6351096 (+)
G302585 NA non-coding upstream 776473 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 792438 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 795928 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 1140027 5175570 ~ 5217425 (+)
G303404 NA non-coding downstream 272172 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 427633 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 504033 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 534805 6898490 ~ 6900530 (+)
LOC113539683 NA non-coding downstream 631160 6994845 ~ 7001112 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 63703 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 885891 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1888256 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 2078779 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2444366 3850561 ~ 3913086 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 134375 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 300283 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1610906 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2117410 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 3172440 9536125 ~ 9551761 (+)

Expression



Co-expression Network