camk1b (LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448)


Basic Information

Item Value
gene id camk1b
gene name LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4695159 ~ 4740849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935208.2
ATGCTACAGGAAATTGTCGAGCCAGGCTTCTTCGTCACCAAGCAACGTGGCCACGTGACCACTATAGCTCACAGGCTCAATCCATTAATAAGCCACGCCCCCGTGCGCGCCCCCTCTCCCCTTTTTACATCGAACGCTGTGACGTCAGCGGTGCGCTGCTTTTGGAGGGCTTGTGAGAGGAAGCGGAGCAGCACTGCACACATAGCGGGCCGAGCGCGCGCACGAACGTCAGCTCAACTCATCTCATCTCCGGCGTTCAGCTACACGATATTTGATCGTAACAAGATGCCCCTGGGTGAAGATGGACACTCGTGGAAGAAAAAGACATCTGACATCAAGGAGATCTACGACTTCAAGGAGGTTTTGGGGACtggTGCGTTCTCCGAGGTTGTCCTAGCCGAGGAAAAGCGAACGAGGAGGTTGGTGGCGATAAAGTGTATTCCAAAGAAAGCACTGGAAGGGAAAGAGAACAGCATTGAGAATGAAATCGCCGTTCTTCACAAGATTAAACATGCCAACATTGTTTCTCTGGAGGACATCTATGAGAACAAATCGCATCTCTACCTCGTCATGCAGCTGGTGTCTGGCGGCGAGCTCTTTGACAGGATTGTGGAAAAAGGGTTTTACACGGAGAAAGACGCAAGCAAACTCATCCAGCAGATCCTAGACGCCGTGAAGTATCTGCACGACATGGGCATAGTGCACCGGGACCTGAAGccAGAGAACCTGCTATATTACAGCATGGACGAGGACTCGAAGATCATGATCAGTGATTTTGGCTTGTCAAAGATCGAGGGCTCGGGTAGCGTGATGAGCACGGCATGTGGAACTCCTGGATACGTAGCTCCGGAGGTTTTGGCCCAGAAGCCGTACAGTAAAGCAGTGGACTGCTGGTCCATCGGTGTCATCGCGTACATACTtTTGTGTGGCTATCCGCCATTTTACGACGAGAACGATGCCAAGCTGTTTGAACAGATCCTGAAGGCAGAATACGAGTTTGACTCGCCATACTGGGATGACATCTCTGATTCAGCTAAGGATTTCATCGTACATCTGATGGAGAGAGACCCGAATCTGCGCTACACGTGTGAACAAGCACTGCAGCATCCATGgattGCCGGTGATACGGCGCTGGACAAGAACATCCACGAGTCTGTGAGCGCTCAGATCAAGAAGAACTTCGCCAAGAGCAAATGGAAGcaAGCGTTTAATGCCACAGCGGTGGTCCGGCACATGCGTCGCCTCCAGCTGGGCACCAGTCAAGAGGGACAGAGTCAGCTTTCACCCCACAGCCCCTGCAGCGAGCGCCTCCTGCTGCCCGAGGGAactgaggaggaagaggacgagCAAAGCACCTCTCAGAGGGACAATAACGGCTGCTCCGAAAGTGCTGGCGAGGGGGCGGGGCACGACGGGATCCAGAACTGCACCTTCTGCGTCCACCCCACCAGCCGAGTCTGAGCCTGTTAATCATCCTGCTGCAACCAATGACTTGACTGTCCCGTGTTTCTACTGGAGTCCTGCCACACCCCCAGTCTGGCCAGGAATACTGAGTAACTCCAGCGCTTGGCCACTAGGTGGCACTGCAGTGTAAAGAATTCCAGGTGGGAAAGGGGGTCGCTATGCCAACAGAGGGATTCTGTTTACAGAGAGGTGAGCTATgagagaagaaggagagagagagagacgcatgCCGCAgctgcattatgggtaatggaCTGAGATTGGACAGTGTTTTATCTTCTGTTTCACAAACTACATGATGTTTCATCTTTCTGTCTTGGAAAAGTGGTTTTAGGTGTGTTTTTAGTTGTAAATTGGGTCCAAAAATATTTTGCCTCTGATCTTTTTagcctgcacactacacacagtttCATGTGcgatcagcacacacacacacacacacacacagacacacacgtttgtctaaTCATTGTGAttaccttccactgacataattattaatgcagctaattaatgctgtgctacacctaaatctaacctgAACGTCAgtctcagtaaccaaaagaaaGCCTTTACGTGCTTTTAGTTCTTAAAAAGCCAAATGTtcctacaaaaacaaaattgtcagatattcctatccttgtggggacatttggtatTTCAATAAAAACTATTTCTGGTGTTTCTATGAACCAAAGGTGAAGCTGAAATTCCCACTAGGTCATGAAAATACCTGGAAGCATATGGTATTAAAatacacatacccacacacacacacacacacattgtctgaTTAACATTATTTCAATCATTTGTACAGAATTATACTTGTACACATTTTGTCCATATTTGACTCTAATCAGTGGCGTTATATATTATTGTGCTACAGCAAACCAAGTCTGCGTCATTGTTTCCTgggacatttattttttcacagtCTTCAGTGCCTTCATGGTTGCAGTTGTTCAGGTTATTATTAATGCTTCATTTTTACATCTATTCATTGCCATTATGATCTGTCTGGATGCAGGATGCTTTAAATGTATAAACCATACTATTTAGGGCAAACACTGCAGctgtgccctgtgtgtgtgtttgtgtgtatgtgtgtgtggcgatTTTATACATCTAATGTCTATTACcattcatgtaaatgtttttatataaaggTGTTTCTTTTACTGGTGGTTTTACTCAGGGGATGATGGTGTGTTAAGGATTTGGGGTTTTAAATAAATGGTACAGGATTCATTATTTACAGATAAGTATAATATATtagtgtggtggcctgggaaaacctgtcgCTATGGctgaaaccataaatatatttcactaaaacggcatggaattttaaaaaaaaaaatttatttactttctaaccttgccttggttATCATCCTGCAAAGATCACGTTGGGTAAGGAGAAAACATTCAAAATCATTCAGTTTAGATAAGTGCCATTTCCTCACACACTTTGTGAAGGTTacactttgatcaagttgttggatagttCACATGTcatagtgaaatggacataatcCTAATTAATTCGGTTTGTAATCAGCTGTTAAAGTGTCCGTGATGCTCCCGCGCCACAGTCAGGACGCAATcttaaaatgtcatttcctGCTTTTACACTTTAGGGTAACCAGACCCTATAACTGCTATAACTTTACTTCTGATTGAGGTAGTGTTTTTACAGTGTGACGGTTTAACATTCACAGTTAGTCACGTTGTATGATAGGTCCATTGACCTTTTTCCAAAAGACTGATTAAAATGCAATTCCGTCTATTTACATTGACCCCCTAAATCATACCTCTGTTTCTCTGCACAGGGGACATGACTACACTGAAACCCTGTGGCTGGTATCAGGTTGCTAACTTTATCATACAAAATGTAGCCCTCTACATGCTACCTTTCCTCCCAGTCACTGtctctttcagcttataatTACAATGATAAGTACTGACAGTGAGACTTTATGGAAAAAGCATTCTTAAAAAATGTATAGACAAGGATGTCCAGTTAAATTGTATGActtttctgtggttttttttcttctttttcttaaagGTCCATATAATACTGTGTGTAATACATACTACTGTGAAACCAAGATATTAGATTATAATGAGATTAGAATTATAATGATATTAGATTATAATACCGTGAACATTTCAAACCGTAACACCCCAAATGAGAAACATATTACAATTCAGGACAGTTTTCAGagctatatatagtagaaaatatgaaaatttcaTCATGGGAAAGGTTGTCCCAGGCTGccataaacatatatatagacagagGAAATAATCTTTGCCCTTGACATGGGGGTCTGttgtaatatttctaatattggTATTACACCACTGAACCTATACAGAATGAAAGGCATTAAAAGAAATTTTGCTGTA

Function

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935208.2 True 3885 mRNA 0.43 13 4695159 4740849

Neighbor

gene id symbol gene type direction distance location
spcs1 spcs1 coding upstream 11608 4681030 ~ 4683551 (+)
gnl3 gnl3 coding upstream 21472 4666876 ~ 4673687 (+)
sfmbt1 sfmbt1 coding upstream 245782 4432525 ~ 4449377 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding upstream 276393 4390352 ~ 4418766 (+)
fgd5a LOC108255103,LOC108435806 coding upstream 314500 4334165 ~ 4380659 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 733041 5473890 ~ 5486512 (+)
LOC113539749 NA coding downstream 766144 5506993 ~ 5510940 (+)
LOC113539468 NA coding downstream 773859 5514708 ~ 5517420 (+)
bmp7a bmp7,LOC108435091 coding downstream 779273 5520122 ~ 5544024 (+)
si:ch211-253b8.5 LOC108254983 coding downstream 816719 5557568 ~ 5577596 (+)
G301923 NA non-coding upstream 399643 4295308 ~ 4295516 (+)
G301921 NA non-coding upstream 400426 4294467 ~ 4294733 (+)
G301881 NA non-coding upstream 484898 4132280 ~ 4210261 (+)
G302360 NA non-coding downstream 79843 4820692 ~ 4820899 (+)
LOC117599916 NA non-coding downstream 96303 4837152 ~ 4878375 (+)
G302530 NA non-coding downstream 434721 5175570 ~ 5217425 (+)
G302575 NA non-coding downstream 781685 5522534 ~ 5565014 (+)
G302586 NA non-coding downstream 819764 5560613 ~ 5561524 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 225963 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 416486 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 782073 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1971578 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2506242 2141522 ~ 2188917 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 469795 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 1459597 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 1757211 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1923119 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 3233742 7974591 ~ 8026929 (+)

Expression


Co-expression Network