b3galt6 (b3galt6,LOC106593203)


Basic Information

Item Value
gene id b3galt6
gene name b3galt6,LOC106593203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6487308 ~ 6489907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935219.2
AGGAGGCTCCTGGTCATTCCACGCTTTCTGACGCCCGCTAGCTTCCTGCCTGCGTCATCACTAACCTGAAGCTAGCAGCCTCCTGTCAGAGTGCCGCTGTGCACAGTGTCTGAGGAGAAACAATGACGAGCTGAACGATTTTTGCGAAATATTTCTACATGCCTGGCCTTGTAGCTATTTCGTGACAATATTATTTATTGAGCTGGGCAACGAGGGAAAGAGGCTGGCGGCGTTATCATCCTGTTTAGCCTCACCAAGCTATGCTAGCTGTGTGACTTGGTAGATTGCTAGCCTCAAGCTAACAATGCGCGAGAGAAAATCATAAACGCGTCAGAAAGCGGTGCAGCGCCTAAATCCCGGCTGTAACACCATGAATTTTGTCCGGCTTGTGTGCCGCCACAAGACTGCCCTGGTGCTCGGTGCCCTCTGCCTCTTCGCCACcgtcctcctcttcctcgcCAAATGCACGTCGGAGACGTTGAAACCTCCTGACTCGCCTGGCTCCGCACCACGCGCCCAACCCCAACCCGAGCGTCCAGCTTCACCTTCTGACACCAAGGAGATCTCGGCTTTCCTGGTGGTCCTGATCACTACAGGTCCAAAATACACCGAGCGGCGCAGCATCATCCGCAGCACCTGGCTCTCCAAAACCGACCCTGATGTGCTTGCGTTGTTCGCGATCGGCACCGAGGGCTTACCGTCCGAGGACATGCGGAATCTAGAGACGGAGCAGACACGTCACGGAGACCTTCTCCTCCTTCCCGAACTCCGTGACTCCTATGAGAACCTGACGCTGAAGCTGATTCACGCCTACTCATGGCTCGATCAGAAACTGGACTTCAAGTTTGTCCTGAAGGCTGATGATGATACGTTCGCCCGTTTGGATCTGCTCAAGGAGGAGCTGAAGAGTAAGGACCCCAGACGCCTTTACTGGGGCTTTTTCTCTGGCCGAGGCCGCGTGAAAACGGCCGGGAAGTGGAAAGAGAGCGCCTGGGAGTTATGTGACTATTACATACCATACGCTTTAGGCGGCGGCTACGTGCTCTCCGCTGACCTAGTGCACTACGTGCACTTGAACTCTGCTTACCTGAAGACGTGGCAGAGCGAGGACGTCTCTCTGGGCGCCTGGCTCGCACCCGTCGACGTGAAACGGCTGCACGACCCGCGCTTCGATACTGAGTACAAGTCGAGGGGGTGCAGCAATAAGTACGTGGTCACGCACAAGCAGAGTCTGGAGGACATGCTCGAGAAGCACCAGACGCTGCAGAGAGATGGACGTCTGTGCAAAGAGGAGGTGAAGCTGCGTTTGTCGTATATTTATGACTGGAGTGTTCCACCATCGCAGTGCTGCCAGCGCAAAGACGGTATCCCTTGACTTCCctgatgatgtcacacacattcagttgttatttatttatttgtggtcCATGCTTGACCAGCCAGCAGCTTACGTGGACTTATTTCATAAGTTCACAGTCTAACAGTCATCCTCTGTACCtttgggagtttttttttttttaaatctgggtATGAATGTGGCAGAACTAGATGCTGACTGGATTTGCAGATATATTCACTAGGAGCAACACGAAATGGACAAAAAGCATTGTGGACCATAGTTAAAAATTgggttacatttatttaatattacttattatttatttggattGTGCCAATACCATGAGTAAGACATTCATGCAGAACTTAACTGGAAAAACAGAGGAGTCAGTATGCTCAGAAGCataaaactgaaaacagaaatgaatttgtatatttgcatatttcagcTGCTGTGTACCTTCATTCCCCCCCTCCAACTCTTTTCCTAAattaatggtgttttttttttttttaacagacaaAGTGAGTGCTGACTTCACTAATGTTATATCTATTTCAACTGGCTCTGTCCCTAAATACTGTAGTAGGCAGTATTGTGTACATTAGACGTTTTCTTTTTGCCTGTCAGATcgattttttatttcagttttgaaATAACCATTTACCATCAGTGGTTCATGTCGATGTGCTGCACTAATAACACTGTCAACTGTTACTACTGAGCCACAGATTATACCTCCATTATGTTATTTTAtcaaatgtttttgttacaCAGTGCATTTGatcatgttattttattataataaaattctaatGAAATTCCA

Function

symbol description
b3galt6 Predicted to enable UDP-galactosyltransferase activity. Predicted to be involved in glycosaminoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome spondylodysplastic type 2 and spondyloepimetaphyseal dysplasia with joint laxity type 1. Orthologous to human B3GALT6 (beta-1,3-galactosyltransferase 6).

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 6

GO: NA

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935219.2 True 2165 mRNA 0.48 2 6487308 6489907

Neighbor

gene id symbol gene type direction distance location
si:ch211-160o17.4 hipk1,LOC108254861 coding upstream 1148 6472900 ~ 6486160 (+)
LOC113539488 ube2j2,LOC108436265,LOC101477245,LOC102783181 coding upstream 17520 6465317 ~ 6469788 (+)
acap3b acap3b,LOC108254862,LOC107714502,LOC107680440 coding upstream 22442 6406770 ~ 6464866 (+)
ddx19 ddx19,LOC108255077,LOC107680447,LOC108411521,LOC107699345,LOC107572851,LOC107556002,LOC107714482 coding upstream 102905 6376435 ~ 6384403 (+)
si:dkey-33m11.6 NA coding upstream 119188 6366056 ~ 6368120 (+)
mapk14b LOC108254806,LOC103028137,LOC108436315,LOC104939458,LOC103386138 coding downstream 16324 6506231 ~ 6533447 (+)
srpk1b LOC108254807,LOC108436365,LOC107592563,LOC107680449,LOC107751004 coding downstream 46686 6536593 ~ 6570973 (+)
kif21b kif21b coding downstream 99135 6589042 ~ 6651029 (+)
LOC113539624 chia,LOC108255197,LOC108255198,LOC108435172 coding downstream 392481 6882388 ~ 6885522 (+)
zgc:113307 LOC108281030 coding downstream 413432 6903339 ~ 6917985 (+)
G303181 NA non-coding upstream 136212 6350192 ~ 6351096 (+)
G302585 NA non-coding upstream 906329 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 922294 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 925784 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 1269883 5175570 ~ 5217425 (+)
G303404 NA non-coding downstream 145950 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 301411 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 377811 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 408583 6898490 ~ 6900530 (+)
LOC113539683 NA non-coding downstream 504938 6994845 ~ 7001112 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 193559 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1015747 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2018112 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 2208635 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2574222 3850561 ~ 3913086 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 8153 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 174061 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1484684 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1991188 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 3046218 9536125 ~ 9551761 (+)

Expression


Co-expression Network