inka1a (LOC108280975)


Basic Information

Item Value
gene id inka1a
gene name LOC108280975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1994213 ~ 1998435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935221.2
CGAGCCCATTCCCCCAAAGAGCTGAGATCAGAGCAACATCTGGACCTTATACATGTTTTCTATTTCTATCTCTATTTCTATATCCACGACATCTTTTAAAGCTTTATCATCCAGTCTTATTTATTCTCACGAGCTTCAGGCACTGCGCAGCTGGTCGTTATTTAATGCAATCAGCTTAatttaggactttttttttctcctttggaGAGACTGAATTATTTACTGAGTCTTCAGCAAAAAACAGATATGttGTGTGTTCAGGACTCGGGTGGGTGTCTCCGTGAGCACATGCGCTGTATGATGCGCTCCCTGCAGGACCTGAAACAGCTACACCGGACCTGCATGATGCAGCCCTCCTCCGGCCCCTGCAAGCTGCTGATTGGACGGCGTGAGCGGCGAGCACGGCTCCGAGTCAGCGACGCCAGCGACTCCAGCAGCTCCGACTCGGCCTGTCGGCTCTCCTGCCCCCTGGAGGACGAGGACAGCAGCGCGGCCAGCAGCCTCGAATTTGACTCTGGCTACTCGGAGGCATCGTGGCCTGACGAGGGACCCGTGGTGCTGCGCCGATTCAGGAAGGTACGCGCCGCATCGGCCGATCTCGATCTAGAACCGAGCCCCCGTCCCAGAACGCGACCCAAATCCACGTCGGACGCCTGCCTGGAAAAGTGGACGTCGTTCGAGGTGCCGAGCGAACCGGAAGACTGGACGGCGGCGCTGCTAACGCAAGGCCGCAACCGGCATCCACTTGTTCTCGGGGATAATAGCTTTGCTGACCTCATTCAGAACTGGATGGATTTGCCAGAGTGTCCATCGGAACCGACAGAACCGAGGCCTAGCGCAAGCAAACGGCTAGCCAAGGACTTTCTGGTCAACGTGAGGCGGAGGATAGCGAGGATTTCACAGAACATAGACGGACAGAAAAAGCTCGTCTCAGACTCGTCTCGGGCGAACAGAGCCGCCATGGCACCCAAACGTCTCTCGTGTCCCGTCGATGTTCCGCGGAAAGTTCCGTTTTTCCACAAATCTCACATGGACCTCCAGGAACTCGATACGGACTTTTACCGCTTCACGGCGCTCATGAAGACAGGCAGCCGGCAGCCAATCATCTGTAACGACGTCATCGGGTACATATGAGTGACCGAACAGACTCTTCTGACTGAACGGACTCTGATATTTACAGACACATCGCTTTTATACCAAACAACTGTATTATTGTTGCCATGTTGCTAATGGTCAAGTTAATAATAATGCTCAagctataataatattaataataataaaaaatttttaattttaa
>XM_026935222.2
TTGTTTCTAAGCTTTAATGGTTCCTCAGATAAACAGTGGCTTAACCCTAACCCAGAGCTGCAGAAACTGCATCTGATCCCCATACAGATGTGTATAAATACGAATTTcatcctttttctctctctctctctctgttgcatgCTCTGATTTTTGTTCAGAACTTCTTTGTGCAAAGGTTTTGAGCTGAAGCACAAAAATTGGCAGGCTGTGTCTTCAGATTTGGGCTCAGATACATTTCCTTCATTACTTCTGCATGCACTGCATACATGCATTATAACTAACACTATAATTATTACTCGTGTTTGAGCATTGCAGACTTCATAAACTGGCTTTTGAGTGACATgtaagtttaataaaaaatataaccaTTTGCTTAAAAAACACATCCTGCACCagaatttaatgttttaaattgaTAGTGATGCTGATGTTCGTGGTCTTCATGCTCTGGACTCATTTGGGACTAATTCATGagtttcctttttatttaattaatttttttcatcccCTTAAAACCCAGagtaagttgtttttttgtgaggagaTCCAGGGTTATCAGTCCTTGCAtcagtagaagtgtgtgttctgtccaACACAGGATTCAGAGATGAAGCGTGAGATATTATTCACAGAGAATCTCGAGAGCTGGAGATAAGCGACCTTCCTGATGTGATCTGCAGCACAGTAACGGCTCTGTGACTCAGCCACAACACCTTAGTCTGAATATTATCGGTTAacataattagttttttttgttttgttttgttatatggAGAACCTGATTTTAGGAATCAGTTCCTCAAAACAAGTTTGCAAAGTAGATCTTACTCCTGCGATAACGACTGAACCTTAAAGAACCAGTTTGGTGAATAATCCAATTTACACAATGCTCCTTCTTCCTCGTAGGTACTCAATCAGTCAGGACATTTAGTGCTCCTGTAGTTTTCAATTTGAAGCTACAACGCTAATGTAGATAACAAGCAAGTGGAAGTCTAGCTCACCCGAAATGTTCTTTGTAAACATCTGGCACAAGCGTGCATCCAATTCGTTCAGAAATGCGAAGCTGATTTGCAGATGTGGTTTAGGACGCAGTCTATAAAAGCTTGGAACGAGTATATAAAGACTTGTGCAAGGTTTATGAGGGATTTTTTTCTTGGTAAaacagacttccattacttgttaagAAGCAAACGTCAGACAGCAAACTATCTCGGGAGATCAATTTTTGATGGTGTATACAGTGAAATGTTGATCTTGAGGTTTATCATTAGGCAAGTGCTGATAATCAGTGATACGATAAATCGTGATACTCATCACACAATAACGCTATCGTGGACACATCGTCCCGCCCTCTGTTTTGCGTTGGATGAAGGCAGATTAAGTAGGCAGTGTTTTTGGGCAGTGCTCACAGTCCAGATATAAAGACTATCCCATCTGGAAGACAGCATCAGGACAGCGGCTACTTCTGCTCACCGGATGAGATTTCTGTttGTGTGTTCAGGACTCGGGTGGGTGTCTCCGTGAGCACATGCGCTGTATGATGCGCTCCCTGCAGGACCTGAAACAGCTACACCGGACCTGCATGATGCAGCCCTCCTCCGGCCCCTGCAAGCTGCTGATTGGACGGCGTGAGCGGCGAGCACGGCTCCGAGTCAGCGACGCCAGCGACTCCAGCAGCTCCGACTCGGCCTGTCGGCTCTCCTGCCCCCTGGAGGACGAGGACAGCAGCGCGGCCAGCAGCCTCGAATTTGACTCTGGCTACTCGGAGGCATCGTGGCCTGACGAGGGACCCGTGGTGCTGCGCCGATTCAGGAAGGTACGCGCCGCATCGGCCGATCTCGATCTAGAACCGAGCCCCCGTCCCAGAACGCGACCCAAATCCACGTCGGACGCCTGCCTGGAAAAGTGGACGTCGTTCGAGGTGCCGAGCGAACCGGAAGACTGGACGGCGGCGCTGCTAACGCAAGGCCGCAACCGGCATCCACTTGTTCTCGGGGATAATAGCTTTGCTGACCTCATTCAGAACTGGATGGATTTGCCAGAGTGTCCATCGGAACCGACAGAACCGAGGCCTAGCGCAAGCAAACGGCTAGCCAAGGACTTTCTGGTCAACGTGAGGCGGAGGATAGCGAGGATTTCACAGAACATAGACGGACAGAAAAAGCTCGTCTCAGACTCGTCTCGGGCGAACAGAGCCGCCATGGCACCCAAACGTCTCTCGTGTCCCGTCGATGTTCCGCGGAAAGTTCCGTTTTTCCACAAATCTCACATGGACCTCCAGGAACTCGATACGGACTTTTACCGCTTCACGGCGCTCATGAAGACAGGCAGCCGGCAGCCAATCATCTGTAACGACGTCATCGGGTACATATGAGTGACCGAACAGACTCTTCTGACTGAACGGACTCTGATATTTACAGACACATCGCTTTTATACCAAACAACTGTATTATTGTTGCCATGTTGCTAATGGTCAAGTTAATAATAATGCTCAagctataataatattaataataataaaaaatttttaattttaa
>XM_026935223.2
CTAGAAATGATAAAGCGGTAATGTCTTAAACTGTAACGCTTAGGTGATTAGCATGGTGCgaaatgtaattattggcaTGGCTAGTTATTGTAACAGAAGGACAAGACAGGAGCAGCTTTCTCGGATGAAACTCTAAACATCTTCACCTCTCCTGGGCTTCAACCCAACAGATGCGTACTTTCAGATGCatgttggatttttttcccatacTTGGACAGATTTGTCCAGGGTCTGTGATTAATCGTGGTGGACGATTGAGCCAGTGGTTGATATCGACCAATCAGAACAGGGATATCGGAGTCAGGCTTGGCGTTGGCCGGTTGTGGGGTTATTTTTGAGTCAGGATTTGGCGAGCGTTCAAGGTTGATGTGAGTCATAGCTGGCGCTGGGGAGTGATCTGTTCTGATCTGTTCTCCAGCGCAGTTTTCAGATGATCACAAATCATCTGCCTGAACAACCAcccatttttattgcattttagtTGTTAATATCTGGGCAGTCGGCTAATGAggatatactgtagattttgtGGACAGGGCGTGTGAGCCGGCGTGttGTGTGTTCAGGACTCGGGTGGGTGTCTCCGTGAGCACATGCGCTGTATGATGCGCTCCCTGCAGGACCTGAAACAGCTACACCGGACCTGCATGATGCAGCCCTCCTCCGGCCCCTGCAAGCTGCTGATTGGACGGCGTGAGCGGCGAGCACGGCTCCGAGTCAGCGACGCCAGCGACTCCAGCAGCTCCGACTCGGCCTGTCGGCTCTCCTGCCCCCTGGAGGACGAGGACAGCAGCGCGGCCAGCAGCCTCGAATTTGACTCTGGCTACTCGGAGGCATCGTGGCCTGACGAGGGACCCGTGGTGCTGCGCCGATTCAGGAAGGTACGCGCCGCATCGGCCGATCTCGATCTAGAACCGAGCCCCCGTCCCAGAACGCGACCCAAATCCACGTCGGACGCCTGCCTGGAAAAGTGGACGTCGTTCGAGGTGCCGAGCGAACCGGAAGACTGGACGGCGGCGCTGCTAACGCAAGGCCGCAACCGGCATCCACTTGTTCTCGGGGATAATAGCTTTGCTGACCTCATTCAGAACTGGATGGATTTGCCAGAGTGTCCATCGGAACCGACAGAACCGAGGCCTAGCGCAAGCAAACGGCTAGCCAAGGACTTTCTGGTCAACGTGAGGCGGAGGATAGCGAGGATTTCACAGAACATAGACGGACAGAAAAAGCTCGTCTCAGACTCGTCTCGGGCGAACAGAGCCGCCATGGCACCCAAACGTCTCTCGTGTCCCGTCGATGTTCCGCGGAAAGTTCCGTTTTTCCACAAATCTCACATGGACCTCCAGGAACTCGATACGGACTTTTACCGCTTCACGGCGCTCATGAAGACAGGCAGCCGGCAGCCAATCATCTGTAACGACGTCATCGGGTACATATGAGTGACCGAACAGACTCTTCTGACTGAACGGACTCTGATATTTACAGACACATCGCTTTTATACCAAACAACTGTATTATTGTTGCCATGTTGCTAATGGTCAAGTTAATAATAATGCTCAagctataataatattaataataataaaaaatttttaattttaa

Function

NR:

description
PREDICTED: protein FAM212A-like isoform X1

GO:

id name namespace
GO:0001502 cartilage condensation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935221.2 False 1297 mRNA 0.52 2 1994213 1998435
XM_026935222.2 True 2537 mRNA 0.46 2 1994502 1998435
XM_026935223.2 False 1602 mRNA 0.52 2 1995999 1998435

Neighbor

gene id symbol gene type direction distance location
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding upstream 17081 1926177 ~ 1977132 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding upstream 73759 1878603 ~ 1920454 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding upstream 181277 1760864 ~ 1812936 (+)
cacna1da cacna1da,LOC108281043 coding upstream 241919 1660208 ~ 1752294 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding upstream 373863 1608449 ~ 1620350 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding downstream 64409 2062844 ~ 2088852 (+)
LOC113539428 LOC108255194 coding downstream 528284 2526719 ~ 2568406 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding downstream 579939 2578374 ~ 2607935 (+)
si:ch211-213o11.11 LOC108281028 coding downstream 623077 2621512 ~ 2629721 (+)
zgc:172270 LOC108281023 coding downstream 636879 2635314 ~ 2641323 (+)
G300487 NA non-coding upstream 50015 1943426 ~ 1944198 (+)
G300479 NA non-coding upstream 69746 1920527 ~ 1924467 (+)
G300467 NA non-coding upstream 136812 1854701 ~ 1857401 (+)
G300447 NA non-coding upstream 171874 1820621 ~ 1822339 (+)
G299916 NA non-coding upstream 353785 1626093 ~ 1640428 (+)
LOC113539753 NA non-coding downstream 9175 2007610 ~ 2021578 (+)
G300649 NA non-coding downstream 195853 2194288 ~ 2195719 (+)
LOC117599869 NA non-coding downstream 321612 2320047 ~ 2325625 (+)
G300688 NA non-coding downstream 355409 2353844 ~ 2354096 (+)
G300689 NA non-coding downstream 356598 2355033 ~ 2355245 (+)
LOC117599925 NA other upstream 495041 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 499568 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1121457 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 1149343 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 1189115 758509 ~ 805098 (+)
mon1a mon1a other downstream 54648 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 143087 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 717227 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1852126 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2159797 4158232 ~ 4278673 (+)

Expression


Co-expression Network