chia.1 (LOC108255291)


Basic Information

Item Value
gene id chia.1
gene name LOC108255291
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8632261 ~ 8636810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935229.2
CCTGCACTTTGGTACCCATTAATAAGACCTAAGTATAAATGAGCTTGAACATGTTCAACTTTCTTCAGAGGATTCTCTTGGAATGTGACAgGTGGATTTCTAAAATAATCTGAATTGAGTCAGCACCACCATGTTCAAATTAACTCTCATAGCAGGACTGCTACTTTCTCTTCAACTTGCCTATTCTACAAAGCTGGTGTGCTACTTCAGTAACTGGTCCCAGTACAGGCCAGGCAGTGGCCGTTTCACTCCTGAGAATGTTGATCCCTTCCTCTGCACACATGTCATCTATGCACTGGCAACCATCAGCCCAGACAATCAGCTTACTACTATGGAATGGAATGATCAGGACATGTACAAGAAACTGAACAGCCTGAAAAATGTAAACCCTTATTTGAAGACACTGCTGTCAGTTGGAGGCTTGTACAATGGCATCAACCCGTATATTAATATGGTGGCCACTCCAGAAAATCGTAGTACCTTCATCCGTTCTGCTCTGGTTTTCCTCCGGGATCATGATTTTGATGGCCTAGACCTGGCCTGGGAGTTCCCTGGACAGAATGGTAGTTCTGCTGAGGACAAGCAGAGGTTTGCTGCACTGATAAAGGAGCTGAAGCAAGCCATTAAACAGGAAGCCATAGACAACAGGAAGACCCAGCTGCTGCTTTCAATCAAAGCAGGAGCGCTTAGGCCCACCATTGATGCAGCTTATGAAGTCCCTGAAATAACAAGTGAAGTAGACTTTCTCAGCATCATGACTTATGACTACCATGGTTCATGGGAGAAGGTTACAGGTCACAACAGTCCTCTTTTCAAGAGTTCTCTAGATCAAGGAACCCACACCGAACACAATATTGATGCTACTGTGTCTTACTGGATAAGCAAAGGGGCTCCAGCTGAAAAGCTGCTTCTGGGCTTCCCCACATATGGACGCACTTTCCGCCTTACCACCTCCTCAACAGGCCTCGGTGCACCAGCCAATGGCCCAGGTGATGGTGGCCCTTACACACGTGATCCTGGCTTTTGGTCTTTTTATGAGATCTGTACTTTTGCACCGGGGGCCAAGGTAGAATGGATCACTGAGCAGAGCGTTCCATATGCCACTAACGGAGTAGCATGGGTGGGCTATGACAACCAAGAAAGCTTTGCTGCCAAGGTTCAGTATCTCACATCCATGAACCTAGGTGGGGCATCAGTATGGACCCTTGACCTGGATGACTTTGGAGGATATTTCTGCGCACAGGGAGACTACCCTCTTGTTAACCACCTACGCAACTCTCTGGGTTTCCCTCCCAAGCCAACCACCACTCAGCCTCCAACCACTACCCCAGACCCTATTGCCTccttttgtgctggaaaacctGATGGTTTGTACCCAAACCCTGCTGATGTCAACACTTACTTCCAGTGCTTCCGTGGAAACACCTACTTGCACCGGTGCCAACCAGGCCTGGTCTATGTTGATGCCTGCAAATGCTGCAACTGGCCATAAGAAGCCagaaaatatatgtaaaaaaaatattcaataaaatcaAAGCCATACTCCACACAATATTTACCATGTCTTTCagtttatatactgtacatttgatCAGTTGTTAACACTGTTGACTATCACTTATCAGTGTTAAGATGAAACTTTTGTGTGGGCAGTCACAAATACAAACTACAGAACTCTTGTTTCTGGTTTAATATCACATGCTATAGACAAAAAGTCAGTCTCTAGTTTAATtgaatttgtttaa

Function

NR:

description
acidic mammalian chitinase-like

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935229.2 True 1745 mRNA 0.45 12 8632261 8636810

Neighbor

gene id symbol gene type direction distance location
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding upstream 2059 8587864 ~ 8630202 (+)
csf1a LOC108280990 coding upstream 371598 8250525 ~ 8260663 (+)
si:ch211-86h15.1 LOC108255151 coding upstream 735518 7855844 ~ 7896743 (+)
ppfia4 ppfia4 coding upstream 798067 7706228 ~ 7834194 (+)
mdfi mdfi,LOC106565692 coding upstream 1038803 7549786 ~ 7593458 (+)
chia.2 LOC108280999,LOC108425699 coding downstream 19849 8656659 ~ 8659829 (+)
zc3h11a zc3h11a coding downstream 36369 8673179 ~ 8683472 (+)
maf1a LOC108254834,LOC108425756,LOC106565397 coding downstream 56867 8693677 ~ 8700644 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding downstream 176771 8813581 ~ 8819844 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding downstream 232209 8869019 ~ 8879676 (+)
G304453 NA non-coding upstream 151672 8480377 ~ 8480589 (+)
G304450 NA non-coding upstream 159947 8472084 ~ 8472314 (+)
G304367 ppp1r15b non-coding upstream 230128 8394722 ~ 8402133 (+)
G304299 NA non-coding upstream 414126 8217868 ~ 8218135 (+)
G304289 NA non-coding upstream 466352 8161799 ~ 8165909 (+)
LOC117599908 NA non-coding downstream 32828 8669638 ~ 8671697 (+)
G304566 NA non-coding downstream 52683 8689493 ~ 8689709 (+)
G304575 NA non-coding downstream 81414 8718224 ~ 8718463 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding downstream 119788 8756598 ~ 8761643 (+)
G304600 NA non-coding downstream 125121 8761931 ~ 8762253 (+)
nfasca nfasc other upstream 70559 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 605332 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 1852903 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2129625 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2338512 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 899315 9536125 ~ 9551761 (+)
G305515 NA other downstream 1875861 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 2127464 10764274 ~ 10773442 (+)
G305727 NA other downstream 2474929 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2504426 11141236 ~ 11178473 (+)

Expression


Co-expression Network