LOC113539488 (ube2j2,LOC108436265,LOC101477245,LOC102783181)


Basic Information

Item Value
gene id LOC113539488
gene name ube2j2,LOC108436265,LOC101477245,LOC102783181
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6465317 ~ 6469788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935234.2
TGGGGAAGGTAAGGTGGTTGACAGCCGTGATGTAAATACCGAGTTGGCTAACATATTAGCCAAGTGCTTTCTTTCCTCGACACGGTTTTACAAATAAACGACAGTCAGTTTGTTTGTCGAACCATAAAAAGAACCTTCGCGACTATTTTAAGAGatgaacAGCAACGGGAATAAGagagcaccaacaacagcaacacagCGCCTAAAACAGGATTACCTCAGAATAAAGAAAGACCCTGTGCCTTACATCTGTGCTGAACCACTTCCCTCAAATATATTAGAATGGCACTATGTTGTTCGGGGACCAGAGAAAACACCTTATGAAGGTGGATACTATCATGGAAAATTGGTATTCCCACGGGAATTTCCCTTCAAACCACCTAGTATTTATATGATAACGCCGAATGGGAGATTCAAGTGCAACACAAGGTTATGTCTATCCATTACTGACTTCCATCCGGACACGTGGAACCCTGCCTGGTCCGTCTCCACCATCCTCACAGGGCTGCTAAGCTTCATGGTGGAGAAAGGCCCCACACTGGGAAGCATCGAGACATCTGATTACACTAAAAGACAGCTGTCTGCACAGAGCTTGGCTTTTAACTTAAAGGACAGGATCTTTTGTGAACTGTTTCCAGATGTTGTTGAGGAGATCAAACAGAAGCAAAAGGCTCAGGAGGAGCTCAATTCACGGCCACAGGCTCTGCCGCTTCCAGATGTGGTGCCAGATGGAGAGCAAGGTCACTTCGGGCTCCCAGAGATGAACGGGCACGTCCCTTTGGGAGAAGCGGCGGCTCCTCAGCACCTCGCCCTCCAGCAGGCTAACCGCAATCATGGACTCCTTGGCGGAGCGCTTGCGAACCTGTTCGTAATAGTGGGCTTCGCTGCCTTTGCTTATACGGTAAAGTATGTACTCGGAGCATAACCCAGGAATGAGACAGGACCTTACTAGACTGGGCTGAAAACAAGTGGGTATCAAGTCACCAAAGTAAGCTCCCATTCCTttcaaaaaaaacactgagatgACAAACCTGATCAACCCTTGTAAGAATCTGAGGAACATCAGGGTGCTTTTGAAAGTACCATAATGCAGCAGAAGACTTGGCTGTAGGTTCGTACATGATTTCTGGATTGCTCCACAGACTCAGCACATGACCACTGAccaatctagaaaaaaaaaaaacatggaaagtTACTCTCAGCCCAGACACTTGAGGCAATGCTCATGTCTCTTCAGTTGTGTTATTAAAAGAAAGGACCGGTGTTTTGTCACTTTTACTATAAAGGTGGAAACTACAGACCAATTTCGATTAAGGAATTTTTGTGTCCACCACACCTTCGTTTGCTCTTCATGGGGTTTCTCATCTGCCTAATTCAACCAGCATTCATCTCTTTCCTTTCCCCTGGTTTGCATTAATGGTTTTCACCATTATTCATTCTGACATGACggtttttttctgtaaacaaCAAATATCCCCTGTCTATGATTCGATTGAAGGTGTTACAGCAAGTCACGGTTTATTCCTCCTTGTTTATcaattatcatttattattctgGCTAGTTGGAGCCTCCCCTATATGTAATGCTATAGAAAGATAAATATGGGAGGTAGAGAATGCTAAgaataaatgtcattaaatcAGTTATTTAATTAGTCACGTTTAATCTTTTACTCATATTGTCATGTAATGCAAGAGTAAGTGGTGGCTATTATCCCTTTGCACTTTGTGAAAGTGGTTTAATAAAGAGTGCTGTCATGATTTAGAGTAAAA

Function

symbol description
ube2j2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nucleus. Orthologous to human UBE2J2 (ubiquitin conjugating enzyme E2 J2).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04554 UBE2J2, NCUBE2, UBC6; ubiquitin-conjugating enzyme E2 J2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935234.2 True 1773 mRNA 0.43 7 6465317 6469788

Neighbor

gene id symbol gene type direction distance location
acap3b acap3b,LOC108254862,LOC107714502,LOC107680440 coding upstream 451 6406770 ~ 6464866 (+)
ddx19 ddx19,LOC108255077,LOC107680447,LOC108411521,LOC107699345,LOC107572851,LOC107556002,LOC107714482 coding upstream 80914 6376435 ~ 6384403 (+)
si:dkey-33m11.6 NA coding upstream 97197 6366056 ~ 6368120 (+)
LOC113539438 LOC108281051 coding upstream 101632 6357452 ~ 6363685 (+)
dnajc16l LOC108255153,LOC108436218 coding upstream 120062 6335684 ~ 6345255 (+)
si:ch211-160o17.4 hipk1,LOC108254861 coding downstream 3112 6472900 ~ 6486160 (+)
b3galt6 b3galt6,LOC106593203 coding downstream 17520 6487308 ~ 6489907 (+)
mapk14b LOC108254806,LOC103028137,LOC108436315,LOC104939458,LOC103386138 coding downstream 36443 6506231 ~ 6533447 (+)
srpk1b LOC108254807,LOC108436365,LOC107592563,LOC107680449,LOC107751004 coding downstream 66805 6536593 ~ 6570973 (+)
kif21b kif21b coding downstream 119254 6589042 ~ 6651029 (+)
G303181 NA non-coding upstream 114221 6350192 ~ 6351096 (+)
G302585 NA non-coding upstream 884338 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 900303 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 903793 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 1247892 5175570 ~ 5217425 (+)
G303404 NA non-coding downstream 166069 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 321530 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 397930 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 428702 6898490 ~ 6900530 (+)
LOC113539683 NA non-coding downstream 525057 6994845 ~ 7001112 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 171568 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 993756 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1996121 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 2186644 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2552231 3850561 ~ 3913086 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 28272 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 194180 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1504803 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2011307 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 3066337 9536125 ~ 9551761 (+)

Expression


Co-expression Network