chchd4a (chchd4,LOC107574929,LOC107718204,LOC102783083)


Basic Information

Item Value
gene id chchd4a
gene name chchd4,LOC107574929,LOC107718204,LOC102783083
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2763662 ~ 2766405 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935236.2
TTGCTTCACACTGCAGCGCGCGGCTGCTCAGTTCGCCGGTTGCTCAGGACCAAATCTTAAAAACGGAGAATAAAAGGTGTTCAGTCGGGTGACTAACGCTTTCCCGCGCTGCTGAAAATGTCTTATTGCAGGCAGGAAGGTAAAGACCGCGTCATCTTTGTGACCAAGGAGGACCACGAAGCACCAAGCAACGCCGAGCTGGTGGAAGACGACCCCAATGACCCGTACGAGGATCACGGTCTCATTCTGCCCAACGGGGACATTAACTGGAACTGCCCGTGTCTGGGCGGGATGGCCAGCGGCCCGTGCGGCCAGCAGTTCAAAGACGCCTTCTCCTGTTTCCACTACAGTAAGGAGGAGGTGAAGGGCTCCGAGTGTGTCGAATATTTCCGCAGCATGCAGGAGTGCATGCAGAAATACCCCGAACTCTACCCGCAGGAGGACGACAACGAGAGAGCCCCCTCTGACGCTGCTGCGCTTGTCGAGTCCTCCAGCACTGACTCTGCTTCTGTTTCAGGCTCGGAGGAAGCAGCGACAAGCACAGAAAACCCTGCAGCTAGCtaatatctgtctctctctctctctctctctctctcacactcacacacatacacacacatacacacacagcctttcAACCTCTGAACTGACTGACTCAGGAGAATGAAAACTCAGAAACACCCGCAAGGAGGCAAGATGTGATGAGAACGATGATAGAAATGCTAATAATGACTAATAACGCTATACAAGCATCACTCTTGAATAAGTGTACACTTCAGATTTCctacaaatccaaaaaaaagagGTGTGAGGTCAGCGTGAATAATTGTAAATGAGAAGAAAGGAAGGACTTGTAGTTTTTGATGCTCCTGCTGATCAGATTTGATGATTAATGTTCATGTCTAAAGGACTGCATCTGCACTGAGTCGCCTTTCGATGCTTTTCttgataaaaaaacaaaacaaaacaaaaaacccattGCTTGTGTTTCACACTGCTGTCTTTATCTTCAATGCGTAGGTTGTCTCGAAGAGCAGCCTCAGTGAAAccctcatgtgtgtgtgtttgtgtgtctgtgtgtgtgtttgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgatatttgtgTACTTCAGACATCCCTCTGTTTTGAAACTTCTCCGTGATTGGTCTTTTTTCAATTTAGCGGTCAACAAATTATCTTAGAAATACTTCACTGATGAGCTGAGGCATCATTTGTATCCCGAAaatcaatagaaaaaaaaaactaaagtgattctgattttccaagatggccgccccatac

Function

symbol description
chchd4 Enables protein-disulfide reductase activity. Involved in several processes, including mitochondrion organization; peptidyl-cysteine oxidation; and protein maturation by protein folding. Located in mitochondrial intermembrane space.

NR:

description
mitochondrial intermembrane space import and assembly protein 40-like

GO:

id name namespace
GO:0022417 protein maturation by protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051084 'de novo' posttranslational protein folding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K17782 MIA40, CHCHD4; mitochondrial intermembrane space import and assembly protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935236.2 True 1309 mRNA 0.47 3 2763662 2766405

Neighbor

gene id symbol gene type direction distance location
ldlrad2 ldlrad2 coding upstream 2495 2754776 ~ 2761167 (+)
atxn7l2a atxn7l2,LOC106565127 coding upstream 49511 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 66695 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 122339 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 133941 2621512 ~ 2629721 (+)
dnah1 dnah1 coding downstream 20480 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 61483 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 78969 2845374 ~ 2881640 (+)
tada3l tada3,tada3l,LOC107656064 coding downstream 120319 2886724 ~ 2893259 (+)
hmces hmces coding downstream 128433 2894838 ~ 2903607 (+)
G300843 NA non-coding upstream 26754 2736478 ~ 2736908 (+)
G300842 zbtb40 non-coding upstream 27655 2735036 ~ 2736007 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding upstream 34055 2728484 ~ 2729607 (+)
G300840 NA non-coding upstream 36151 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 37070 2726264 ~ 2726592 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 140303 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 262535 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 686266 3452671 ~ 3453505 (+)
G301506 NA non-coding downstream 755387 3521792 ~ 3530359 (+)
G301792 NA non-coding downstream 1151925 3918330 ~ 3918531 (+)
LOC113539549 LOC108254930 other upstream 40081 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 574745 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 703021 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1264490 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1269017 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 1084156 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1391827 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1684635 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2444239 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3434041 6200446 ~ 6293749 (+)

Expression


Co-expression Network