srsf3b (srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901)


Basic Information

Item Value
gene id srsf3b
gene name srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 503469 ~ 508353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935277.2
CCCATTACGTGAGCACGCACGCTGCGTCAGGACGACAGGAGAAGGCATTTCACAGCAGCGCCATTTTGCTGAAGAAGAGTTCAAGCGCGCGGTCAGGAGAAGAATAACGACGTCGAAAGAGAAACTACAAATTAAAATACCaTCCCATCATGCATCGCGACTGCCCGTTGGACTGTAAGGTGTACGTAGGGAATCTTGGGAACAATGGGAATAAATCGGAGCTGGAGAGAGCCTTCGGTTATTACGGGCCTTTGCGCAGCGTCTGGGTGGCCAGGAATCCCCCCGGCTTCGCCTTCGTCGAGTTTGAGGACCCGAGGGACGCCACAGACGCTGTGAGAGAGCTGGACGGCAGGACTCTGTGCGGTTGCCGTGTGAGGGTCGAGCTATCCAATGGGGAGAAGCGATCCCGTAACCGAGGCCCACCGCCGTCCTGGAGCAGACGCCCACGTGACGATTACCGCCGCCGAAGCCCGCCTCCCAGGCGCAGATCCCCCCGCAGGAGGAGCTTCAGCCGCAGCCgcagcagatctcTTTCTCGTGACCGCAGAAGGGAGAGATCTCTGTCTCGTGACAGGAACCACAAACCGTCTCGCTCCTTCTCCAGATCCAGAAGTCGCTCTCGGTCGAATGACAGGAAGTGAGACAAAGATGAGATCCTTGATTATGGACGTCTCGTGTAAAGATCATCGTCTTTTAAACTCCAGCGTTATGGACTCTGACTCGGACACCCTACTTCATTagccttttctttattttccttattttatAAAGAGATCAGATGTTTTAGAGCGGTTATGTTTctcacccgtgtgtgtgtgtgtgagcgagagagagagtgtgtgtgtgtgtgtgagcgcgagagagagagagatgcagagctTCGTTTCTCAGCTGTCACCATTCCGTCGCCgatcatttttaaaatcgtTTGGGtttatatatatctattttCCCTCCTCGGTCCTGCATGGTCATGTGAATGTAACGAGCAGTTCCTCCTACACGTGTTTTTCAGCAGGAGATGTGAAGtgaacttttttgtttgttagtttttgttTAATGGCGTTAGGAATCCTCTCTGTGAATTCGTCGTGAGCTTGAGATGGGAAACTGTACGGCACTATGAAGAAATGTTTTTCCccttccgtttttttttttttcttctcccctCCTCTATAGTGTTTGTACTGTTTGTAATGttcatctaaaataaaaaaactggtTTCAGAA

Function

symbol description
srsf3b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3).
srsf3 Enables RNA binding activity. Involved in mRNA export from nucleus and regulation of mRNA splicing, via spliceosome. Located in nuclear speck. Biomarker of bipolar disorder and ovary epithelial cancer.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 3 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12892 SRSF3, SFRS3; serine/arginine-rich splicing factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935277.2 True 1230 mRNA 0.50 6 503469 508353

Neighbor

gene id symbol gene type direction distance location
apobec2a LOC108281085 coding upstream 7832 492045 ~ 495637 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding upstream 64292 431512 ~ 439177 (+)
btg2 LOC108255010 coding upstream 94019 406108 ~ 409450 (+)
zgc:153675 LOC108255011 coding upstream 122926 376562 ~ 380543 (+)
wdr77 wdr77 coding upstream 177162 315968 ~ 326307 (+)
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding downstream 14023 522376 ~ 530478 (+)
bysl bysl coding downstream 33684 542037 ~ 547617 (+)
ccnd3 ccnd3 coding downstream 40480 548833 ~ 554712 (+)
dstyk dstyk coding downstream 63235 571588 ~ 607621 (+)
nbl1 nbl1,LOC105897883 coding downstream 179598 687951 ~ 696115 (+)
G299528 NA non-coding upstream 249237 251723 ~ 254232 (+)
G299522 NA non-coding upstream 266979 236076 ~ 236490 (+)
G299482 NA non-coding upstream 286060 209994 ~ 217409 (+)
G299486 NA non-coding upstream 298557 203812 ~ 204912 (+)
G299503 NA non-coding upstream 324804 173753 ~ 178665 (+)
G299618 NA non-coding downstream 56923 565276 ~ 565508 (+)
G299625 NA non-coding downstream 93205 601558 ~ 602113 (+)
G299679 NA non-coding downstream 299806 808159 ~ 809350 (+)
G299708 NA non-coding downstream 330010 838363 ~ 838915 (+)
G299695 NA non-coding downstream 337115 845468 ~ 847722 (+)
dram2b NA other upstream 143211 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 314152 165615 ~ 189317 (+)
cdkn1a cdkn1a other downstream 7187 515540 ~ 520943 (+)
LOC117599902 NA other downstream 170564 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 250156 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 334500 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 354905 863258 ~ 872756 (+)

Expression


Co-expression Network