si:ch211-213o11.11 (LOC108281028)


Basic Information

Item Value
gene id si:ch211-213o11.11
gene name LOC108281028
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2621512 ~ 2629721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935288.2
GGAGGGGGTCTATAGGCCATCTTCTCTTTTCTTGCACTCACTTTCACATGAATATGTGATTAACTGTTGCTACTGGTTACTActcacacccccacacacacactcacaccctggccagctgttctgtctctctgagtgtgtgtgtgtgtgtgtgtccctctctgtctctctgtctcagagcATCAGTGCCGTCGTTCACCTGCTGCCTCGAACCCACCTGGTGTTTACTGCTAGGCAAtaaacgctgtgtgtgtgtgtgtgagagagagagagaaagagagtggaCTTACTCTACCAACGCCAGCACATCCCTCCTGTTTCTCTCAAATGTCTCCTGCTCTAAATAACTGCTTTGCTTCTGATAGATCTTCTGCTCTTCATTGTAACATCTGGATACATGTGCACATCTGGCTGTGATATCGGGTTTGAGAGGGATTTCACAGGACCTTCAGTGACCACCAGGTCTGGCCTGTGATTAGTCAATCCCATCCCCCCGTTGGACAATGGAAGAACCCGTTATTGTGACCTGAGCTGCGTAGATCTGAGCTACAAAGATGACAGCATCGGGATTCCCTCAGACCCCCAACCTCAATGAAACACAAGCCAACCACTCACTGGAACATGGTGCCTCTGTGCACCCTACTCCCAGCATGCAACTGGGCACCATGTCCAACCCACAGTCCCGTCTCCGTGATGCCATGGGTCTGGCGGCCATGGTGACGCTGAACGCCGTGGCTCTGCTGGCGAACCTGGCCGTTCTGATCGTGGTGCTGAAGGCGGCACACCTGAGGAAGTACAGCTTCGTGTGGCACCTATGCGGTGTGGATGTGCTGTGTGCAGCCATCCTCATGCCCCTTACCATTGTGTGTGGCTCACCATTCTTCGCTGGGGTCATCTTTACGCCGCTTGAGTGTCGCCTGTACATCTTCCTTAATGCTTTTCTGATCTCTGCCTCCATCTTCACAGTGACAGCGATCAGCGTCGAGCGCTACTACTACATAGTGCACCCGATGCGCTACGAGGCCAAAATGACGCCCCGCATTGCTGCCGCAGTCATGGCGCTGGTCTGGTTGGCGTCTGCTGTCCTTGGACTGGCCACTGTGTTTGGGTGGCCCAGTTATCGCCACCACAGTGCCATTGCTGCCGCCCACTGCTCACTTCACTGGAGCCACAGCGGGCACCGGCGTGTTTTCTCCATTATCTTCTGCGTGCTTTGCTTTTGCGTCCCCGCTGCCATCATCCTAGCCGTGTATGCCAACGTTTACAAGGTGGCGCACATGGCCGCCCGACACAGGGGTCCTCTGCCTAGCTGGGTGCCTGCAACACCTCGTCCAAAACACCGTTCTGACTCCGTCAACAGCCaaaccaccatcatcaccagcAGCTCAAGTGCGAGGAGAGGGACAGGGACGCACGCACCTCGCAGGCCACGCCGGACACTGGTGGGCGGTAAAGCAGCACTCACACTCGCTGTCATCGTGGGCCAGTTTGTCCTCTGTTGGCTGCCATACTTTGCCTTCCATCTGCACTTGTCCCTGGGCGTCACCCATAGCTCGGCTGACGAGGCAGAAGGCCCCGTGACGTGGCTGGCGTACTCTTCATTTGCTGCAAACCCATTTTTCTACGGCCTGCTGAACCGCCAGATCCGCGAGGAGGTGTGTAAGACgatgtgctgctgctgccgctCGCCCAGCAGACCTGCGAGACCCCCAGCATCCGGGCACGATGCCTCTGCACACGAAGACTTCCTGCACTTCCTGAAGCGCAGCAGCTCGGTGGAAGCCACACACAGCAGTTACAGCACTGCAACTCCCAGAAACACACTGGACCAAACCGCGTTCAGGATACCAGGACAGATCCCTGAGGAACTCACCTAGGCTGCTGTTAGAAGACATCCAAATCTGGAACTTTCAATTTGGATCCAAATCTGGAACATTCATATCATATCCATATTTGGAATGTTCAAATCGGATTCAAATCTGGTATATTCAAATTGGATCCAAATctggaatttttaaaatcagatccAAATCTGGAATGTTCAAAATTGGATTCAAATCTGGAAAGGTCATATCAGCTCCCAAGCTGGAACATTCAAATCATATCCAAATCTAGAAACTTCAAATCCAGATCCAAATCTGGAAGACTGAAATCGGATCCAAATCAATGTTCAAATCAGATCCAAATCTGGAATGTTCAAAACAGATATAAAGGGAAAACTGGAGAAAAGGGGGGGAaggtacagaaaaaaatactgctCCAGAATTCCTGCTATTTTAGCAATTGCTCAGATGCCAAAAGCTGGTCTAATCAAACGAACCAAACTGATCAAGTGAAGaggaaattaataaatgtacagtTCAAGTCTCTTTTGGGTCTGCTTTGTCATGCTAATAGCACGTGATAATGAGTGATGTagtcaagacacacacacacacacacacacacacacactacactcacttTTATACTGGGTTGTTTACGTACACTGACTTTTAACATGGACTACACCACtggtgattatttttaaataattgagaGATCAGTTTTGAACATATTATTAGAAATGACCAAATTTCTGGTCCGTCCCTCAAGTAAAACGATCCAGTGACTTGAATTAGACTGAATCagatatgtgaaaataaaatctgataCTGAGGTCAGGCTGTCTGAAGTCAACTTCAGATACTCAGGGCTGTTAGTTTTACAGAGAAGTGAGAGGATTTGCTTACACGTATGCCACAGTAACGCCTTGGATTATCGTCTTCAGCCGTGTTTTATTCAGAACGAGAATTTTCACCGCGATCCGTAACAACATTCGcggtctttatttatttgccttaaAATACTACACGACGCAACTATAATGCAGTTTTTATATCAGACAACTTTCACTCTCTCCTTGAAATCCATCTATTTTGTTATTGATTTAACAAATATCCTGTATTTTGGTACCAATGTTTGTTGAGTTGTTCGCTGAGTTGCCTCATTTTACGCAGCTGCACAATACTAAAGACTCTGTATTAGTATATATATTACATGGTGttgtttaatattgtttaagaatatattttaacattcattttcagtcattTGTGATGTGAGTAGTTTCATGTTGAGTTAACGATACTGTgcaaaatgatatttatttggAACCATATTTATTCAAGTTCAAAAGCTGTCTTTCTGGTTttaatttctgttcatttttctccATGTGGCTCTGAGATGTTTCTAAGATCTCCTGTTTCCCTGCTGAATAAAACAACCCTTCACTCTGTCACGTG
>XM_034314063.1
TTGGAGATAAAGCTCTTTGGCTTCTTCATCCGCACGAAAAAGCGTGGGAGCTGAGTGTGCAAGCCCTCGTCCTATCCATCCGATCCATCAAGATCCACACTGCGATAAAGCTGAAAAACACCATGCAGCCGTGATGatgtaacacactcacacacacacacacatacacacatttatgacACTCATTAGTGCCTATAAACTGTATTCACCGACGGTGGCTCATACACAATATACCCTGAGATGATGGATGAACAAACAGAAAGTGATGCAGGTCCACTATCAGGAGGCATGATCAGCTTTAGAAGATCTgagatttcagatttcagGTCTGGCCTGTGATTAGTCAATCCCATCCCCCCGTTGGACAATGGAAGAACCCGTTATTGTGACCTGAGCTGCGTAGATCTGAGCTACAAAGATGACAGCATCGGGATTCCCTCAGACCCCCAACCTCAATGAAACACAAGCCAACCACTCACTGGAACATGGTGCCTCTGTGCACCCTACTCCCAGCATGCAACTGGGCACCATGTCCAACCCACAGTCCCGTCTCCGTGATGCCATGGGTCTGGCGGCCATGGTGACGCTGAACGCCGTGGCTCTGCTGGCGAACCTGGCCGTTCTGATCGTGGTGCTGAAGGCGGCACACCTGAGGAAGTACAGCTTCGTGTGGCACCTATGCGGTGTGGATGTGCTGTGTGCAGCCATCCTCATGCCCCTTACCATTGTGTGTGGCTCACCATTCTTCGCTGGGGTCATCTTTACGCCGCTTGAGTGTCGCCTGTACATCTTCCTTAATGCTTTTCTGATCTCTGCCTCCATCTTCACAGTGACAGCGATCAGCGTCGAGCGCTACTACTACATAGTGCACCCGATGCGCTACGAGGCCAAAATGACGCCCCGCATTGCTGCCGCAGTCATGGCGCTGGTCTGGTTGGCGTCTGCTGTCCTTGGACTGGCCACTGTGTTTGGGTGGCCCAGTTATCGCCACCACAGTGCCATTGCTGCCGCCCACTGCTCACTTCACTGGAGCCACAGCGGGCACCGGCGTGTTTTCTCCATTATCTTCTGCGTGCTTTGCTTTTGCGTCCCCGCTGCCATCATCCTAGCCGTGTATGCCAACGTTTACAAGGTGGCGCACATGGCCGCCCGACACAGGGGTCCTCTGCCTAGCTGGGTGCCTGCAACACCTCGTCCAAAACACCGTTCTGACTCCGTCAACAGCCaaaccaccatcatcaccagcAGCTCAAGTGCGAGGAGAGGGACAGGGACGCACGCACCTCGCAGGCCACGCCGGACACTGGTGGGCGGTAAAGCAGCACTCACACTCGCTGTCATCGTGGGCCAGTTTGTCCTCTGTTGGCTGCCATACTTTGCCTTCCATCTGCACTTGTCCCTGGGCGTCACCCATAGCTCGGCTGACGAGGCAGAAGGCCCCGTGACGTGGCTGGCGTACTCTTCATTTGCTGCAAACCCATTTTTCTACGGCCTGCTGAACCGCCAGATCCGCGAGGAGGTGTGTAAGACgatgtgctgctgctgccgctCGCCCAGCAGACCTGCGAGACCCCCAGCATCCGGGCACGATGCCTCTGCACACGAAGACTTCCTGCACTTCCTGAAGCGCAGCAGCTCGGTGGAAGCCACACACAGCAGTTACAGCACTGCAACTCCCAGAAACACACTGGACCAAACCGCGTTCAGGATACCAGGACAGATCCCTGAGGAACTCACCTAGGCTGCTGTTAGAAGACATCCAAATCTGGAACTTTCAATTTGGATCCAAATCTGGAACATTCATATCATATCCATATTTGGAATGTTCAAATCGGATTCAAATCTGGTATATTCAAATTGGATCCAAATctggaatttttaaaatcagatccAAATCTGGAATGTTCAAAATTGGATTCAAATCTGGAAAGGTCATATCAGCTCCCAAGCTGGAACATTCAAATCATATCCAAATCTAGAAACTTCAAATCCAGATCCAAATCTGGAAGACTGAAATCGGATCCAAATCAATGTTCAAATCAGATCCAAATCTGGAATGTTCAAAACAGATATAAAGGGAAAACTGGAGAAAAGGGGGGGAaggtacagaaaaaaatactgctCCAGAATTCCTGCTATTTTAGCAATTGCTCAGATGCCAAAAGCTGGTCTAATCAAACGAACCAAACTGATCAAGTGAAGaggaaattaataaatgtacagtTCAAGTCTCTTTTGGGTCTGCTTTGTCATGCTAATAGCACGTGATAATGAGTGATGTagtcaagacacacacacacacacacacacacacacactacactcacttTTATACTGGGTTGTTTACGTACACTGACTTTTAACATGGACTACACCACtggtgattatttttaaataattgagaGATCAGTTTTGAACATATTATTAGAAATGACCAAATTTCTGGTCCGTCCCTCAAGTAAAACGATCCAGTGACTTGAATTAGACTGAATCagatatgtgaaaataaaatctgataCTGAGGTCAGGCTGTCTGAAGTCAACTTCAGATACTCAGGGCTGTTAGTTTTACAGAGAAGTGAGAGGATTTGCTTACACGTATGCCACAGTAACGCCTTGGATTATCGTCTTCAGCCGTGTTTTATTCAGAACGAGAATTTTCACCGCGATCCGTAACAACATTCGcggtctttatttatttgccttaaAATACTACACGACGCAACTATAATGCAGTTTTTATATCAGACAACTTTCACTCTCTCCTTGAAATCCATCTATTTTGTTATTGATTTAACAAATATCCTGTATTTTGGTACCAATGTTTGTTGAGTTGTTCGCTGAGTTGCCTCATTTTACGCAGCTGCACAATACTAAAGACTCTGTATTAGTATATATATTACATGGTGttgtttaatattgtttaagaatatattttaacattcattttcagtcattTGTGATGTGAGTAGTTTCATGTTGAGTTAACGATACTGTgcaaaatgatatttatttggAACCATATTTATTCAAGTTCAAAAGCTGTCTTTCTGGTTttaatttctgttcatttttctccATGTGGCTCTGAGATGTTTCTAAGATCTCCTGTTTCCCTGCTGAATAAAACAACCCTTCACTCTGTCACGTG

Function

NR:

description
PREDICTED: probable G-protein coupled receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935288.2 True 3287 mRNA 0.47 2 2621512 2629721
XM_034314063.1 False 3151 mRNA 0.47 2 2625147 2629721

Neighbor

gene id symbol gene type direction distance location
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 13577 2578374 ~ 2607935 (+)
LOC113539428 LOC108255194 coding upstream 53106 2526719 ~ 2568406 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding upstream 532660 2062844 ~ 2088852 (+)
inka1a LOC108280975 coding upstream 623077 1994213 ~ 1998435 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding upstream 644380 1926177 ~ 1977132 (+)
zgc:172270 LOC108281023 coding downstream 5593 2635314 ~ 2641323 (+)
sypl2a sypl2 coding downstream 54328 2684049 ~ 2696967 (+)
atxn7l2a atxn7l2,LOC106565127 coding downstream 74982 2704703 ~ 2714151 (+)
ldlrad2 ldlrad2 coding downstream 125055 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 133941 2763662 ~ 2766405 (+)
G300723 NA non-coding upstream 103307 2436366 ~ 2518205 (+)
LOC113539650 NA non-coding upstream 234411 2375972 ~ 2387101 (+)
G300700 NA non-coding upstream 235291 2385983 ~ 2386221 (+)
G300689 NA non-coding upstream 266267 2355033 ~ 2355245 (+)
G300688 NA non-coding upstream 267416 2353844 ~ 2354096 (+)
G300827 NA non-coding downstream 44646 2674367 ~ 2676370 (+)
G300838 NA non-coding downstream 86979 2716700 ~ 2717082 (+)
G300837 NA non-coding downstream 95267 2724988 ~ 2725736 (+)
G300839 zbtb40 non-coding downstream 96543 2726264 ~ 2726592 (+)
G300840 NA non-coding downstream 97583 2727304 ~ 2727511 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 432595 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 560871 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1122340 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1126867 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1748756 863258 ~ 872756 (+)
LOC113539549 LOC108254930 other downstream 85941 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1220840 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1528511 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1821319 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2580923 5210644 ~ 5471561 (+)

Expression


Co-expression Network