LOC113539530 (LOC108254765)


Basic Information

Item Value
gene id LOC113539530
gene name LOC108254765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1340445 ~ 1344256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935334.2
AAATTACTCTGGCTGGCTCTTAAATAACTTTGCTAACTCTGTTTCCTGTACAGTCTGTGAAATACCGGTGTGTGTAAACTATCTAGTGCTCtagtggtttgggacacagcctgtGGTTTGCcgtcctctctctctgagtgtccTGAGGTGATGTAGTTCGCCTTCAGATTGTTTTAGTTGTGAAATAATTGAGGAAATAAATCCAGGCTCGCGCGATGCTGCTCTCGGAGTCGGAACCGCGGCTCTTCCGGTTCTCCCGCCTGCTGTTTGGACTTTTTACACACTTACTCTGCGCCGCTTTCACCGTGTTTGTGGCGATACTCGCGAAACCAGGCTCCAGTTTGTTTTCTTGGCACCCGTTTCTGATGACCTTGGCGTTCTCGTTTTTCATGACCGAGGCGATTCTGGTCTTCTCTCCGCACTCCTCTCCTGTGGGTAAATTAAAGCACCAGGTAAAATCGCGGCTGCACTGGATCCTGCAGTGTTCCTGCGTGTCCTGCGCCCTGGTGGGACTCGGAATCATCTTCTACAACAAGCATGTGAACGGTAAGCCGCATTTCTCCACGTGGCACGGGCTGATGGGCGTCGTCACCGTGTGCGTGGTGGTGCTGCAGTCGGTGGCGGCGCTGCCTCTTATCTACCACAAACTGGCTAAAGGCTGGTCTCTGGCCAAGCTGAAGCGCTACCACGCCGCCGCGGGACTCGTCACCTACCTGCTGGCCAGCGCGAGTCTCCTGCTGGGCACCTGCTCCGCCTGGTTCACGTCCAGCGTCGGGGGGAACGCGTGGTACGTCACCGTGCTGTGCCCCGCCATCTCCGCCCTCACCATCATGAGCCAAGTGACCAACGCCTACATGGCCAAAAAACGCCTGCAGTCCTAAAGCAGGAGTGGACGTGCGACGTGACATCTCCATGTCGTCATAGTGATCGTTTACATCGTCATCACAGACACATCAGAGATGAactttttgcttgttttgtgaCGGAAGGATAAACACAAACGACTATGAAAGTAGATCTAAAACACAAGAGAGTTCACACATCAAACATGTCTCGGCTGATGGACTGCGTTTGGGATGAAGGGGTCGGACATTAGAGGTGTGTATCCGGGAGCAAATCCACGCGAGCGTATCACTCTGACGTTCTGGGGGTTTGGTTTGGTCAGATATAAAAGGAAACGCCACATTCCTGAACCTTGAGCTCGTACTGTGGCTTCCCGGTGATGTAAATAActaaatcatttatattttgtcaAACAGAAACAAGTTCATCAGAAAAACATGAAGAAATCATAAACAGGTTCAAACAATAATAAGAGCAGGAGTGGGCGGAATTGTTCGGAATTCCTTCTGGAGCAGATGGGAATGCTGACACTTCCTGCCAGAGTGGGCGAGAACGGGATTAAAAGAACAGTCCCGTGCACACCTCGACTGCGTATCGTTCATTTTTAGCCAAACGCTTCCTCTGACGATGTCAGAACTCGACGTTTGCACCAAAACACCTCTCAATGGTGCTACAGGTAAAGGTGTGCACTGGAGTGATCTTTAATCCCAGTCACGCTgtggttatttgtgtgtgtgtgtgtctggacaCCATACTTTCTAATGTTTCTAATGTAATTGGTTGTATTTCTTCaaaattactgaagatgaaatgaCGGTGATGCCTTTCTGACATTCGGGGAACACGGAAGCAAAGCTCAGGTTGGTATTTTGGCAAAGAAACAACAAAGGGATAAAGAAGAATTCACGATAAAGAAGTAACGTGTAACGTCCAGACGAGGCTCCGATGGCGTGTGGCGTTTTCACTTCAGTGAATATTTAACACCGCTCCTGAGCTTCATATCGCTCTCAGATTTATAATTATTACGAAACtgtttatacttttatacttaCAGCAAAATGACCCATAATGcatgactgtaaaaaaaaataaataaaaacaaaaaaacattctgcgTTTGATGGGACTGTAAATgtactgagagagaaaagaggaaaaattctttaaagaaagaaagaa
>XM_034314255.1
AAATTACTCTGGCTGGCTCTTAAATAACTTTGCTAACTCTGTTTCCTGTACAGTCTGTGAAATACCGGTGTGTGTAAACTATCTAGTGCTCtagtggtttgggacacagcctgtGGTTTGCcgtcctctctctctgagtgtccTGAGGTGATGTAGTTCGCCTTCAGATTGTTTTAGTTGTGAAATAATTGAGGAAATAAATCCAGGCTCGCGCGATGCTGCTCTCGGAGTCGGAACCGCGGCTCTTCCGGTTCTCCCGCCTGCTGTTTGGACTTTTTACACACTTACTCTGCGCCGCTTTCACCGTGTTTGTGGCGATACTCGCGAAACCAGGCTCCAGTTTGTTTTCTTGGCACCCGTTTCTGATGACCTTGGCGTTCTCGTTTTTCATGACCGAGGCGATTCTGGTCTTCTCTCCGCACTCCTCTCCTGTGGGTAAATTAAAGCACCAGGTAAAATCGCGGCTGCACTGGATCCTGCAGTGTTCCTGCGTGTCCTGCGCCCTGGTGGGACTCGGAATCATCTTCTACAACAAGCATGTGAACGGTAAGCCGCATTTCTCCACGTGGCACGGGCTGCCTCTTATCTACCACAAACTGGCTAAAGGCTGGTCTCTGGCCAAGCTGAAGCGCTACCACGCCGCCGCGGGACTCGTCACCTACCTGCTGGCCAGCGCGAGTCTCCTGCTGGGCACCTGCTCCGCCTGGTTCACGTCCAGCGTCGGGGGGAACGCGTGGTACGTCACCGTGCTGTGCCCCGCCATCTCCGCCCTCACCATCATGAGCCAAGTGACCAACGCCTACATGGCCAAAAAACGCCTGCAGTCCTAAAGCAGGAGTGGACGTGCGACGTGACATCTCCATGTCGTCATAGTGATCGTTTACATCGTCATCACAGACACATCAGAGATGAactttttgcttgttttgtgaCGGAAGGATAAACACAAACGACTATGAAAGTAGATCTAAAACACAAGAGAGTTCACACATCAAACATGTCTCGGCTGATGGACTGCGTTTGGGATGAAGGGGTCGGACATTAGAGGTGTGTATCCGGGAGCAAATCCACGCGAGCGTATCACTCTGACGTTCTGGGGGTTTGGTTTGGTCAGATATAAAAGGAAACGCCACATTCCTGAACCTTGAGCTCGTACTGTGGCTTCCCGGTGATGTAAATAActaaatcatttatattttgtcaAACAGAAACAAGTTCATCAGAAAAACATGAAGAAATCATAAACAGGTTCAAACAATAATAAGAGCAGGAGTGGGCGGAATTGTTCGGAATTCCTTCTGGAGCAGATGGGAATGCTGACACTTCCTGCCAGAGTGGGCGAGAACGGGATTAAAAGAACAGTCCCGTGCACACCTCGACTGCGTATCGTTCATTTTTAGCCAAACGCTTCCTCTGACGATGTCAGAACTCGACGTTTGCACCAAAACACCTCTCAATGGTGCTACAGGTAAAGGTGTGCACTGGAGTGATCTTTAATCCCAGTCACGCTgtggttatttgtgtgtgtgtgtgtctggacaCCATACTTTCTAATGTTTCTAATGTAATTGGTTGTATTTCTTCaaaattactgaagatgaaatgaCGGTGATGCCTTTCTGACATTCGGGGAACACGGAAGCAAAGCTCAGGTTGGTATTTTGGCAAAGAAACAACAAAGGGATAAAGAAGAATTCACGATAAAGAAGTAACGTGTAACGTCCAGACGAGGCTCCGATGGCGTGTGGCGTTTTCACTTCAGTGAATATTTAACACCGCTCCTGAGCTTCATATCGCTCTCAGATTTATAATTATTACGAAACtgtttatacttttatacttaCAGCAAAATGACCCATAATGcatgactgtaaaaaaaaataaataaaaacaaaaaaacattctgcgTTTGATGGGACTGTAAATgtactgagagagaaaagaggaaaaattctttaaagaaagaaagaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08371 CYB561D2; transmembrane reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935334.2 True 2022 mRNA 0.48 3 1340445 1344256
XM_034314255.1 False 1971 mRNA 0.47 4 1340445 1344256

Neighbor

gene id symbol gene type direction distance location
LOC117599924 NA coding upstream 25743 1313707 ~ 1314702 (+)
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding upstream 116156 1211519 ~ 1224289 (+)
LOC113539523 LOC108254796,LOC108443907,LOC108444093,LOC108444092,LOC108254798 coding upstream 150147 1179339 ~ 1190298 (+)
LOC113539522 LOC108444092,LOC108443907,LOC108254796,LOC108444093 coding upstream 165072 1164088 ~ 1175373 (+)
LOC117599896 wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573 coding upstream 189535 1139608 ~ 1150910 (+)
bap1 bap1 coding downstream 18216 1362472 ~ 1372744 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding downstream 32223 1376479 ~ 1444625 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding downstream 264193 1608449 ~ 1620350 (+)
cacna1da cacna1da,LOC108281043 coding downstream 315952 1660208 ~ 1752294 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding downstream 416608 1760864 ~ 1812936 (+)
G299786 NA non-coding upstream 39041 1278848 ~ 1301404 (+)
G299773 hyal2 non-coding upstream 41536 1255066 ~ 1298909 (+)
G299787 NA non-coding upstream 67772 1272147 ~ 1272673 (+)
G299735 NA non-coding upstream 333492 965530 ~ 1006953 (+)
G299734 NA non-coding upstream 349738 954435 ~ 990707 (+)
G299833 rad54l2 non-coding downstream 12066 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 64246 1408502 ~ 1437257 (+)
LOC117599906 NA non-coding downstream 256437 1600693 ~ 1604586 (+)
G299862 NA non-coding downstream 276544 1620800 ~ 1622584 (+)
G299916 NA non-coding downstream 281837 1626093 ~ 1640428 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 467689 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 495575 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 535347 758509 ~ 805098 (+)
LOC117599902 NA other upstream 613523 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 819502 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 104186 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 152604 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 708827 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 797266 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1371406 2715662 ~ 2723581 (+)

Expression


Co-expression Network