LOC113539544


Basic Information

Item Value
gene id LOC113539544
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6067054 ~ 6071054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935347.2
TACAGGGCTGATTTCACTTCTTGTTTGAGCATGCTAGTTAATTCTCGAGACCCATGAGTAGTAATCCATGAGTACTTACTTTATAAAATGGGCTGTGAGGAAAGTGTCATGGACGACAGTAATAACGAATATGACTCCACATGGGACGATGAGTCTGAAGAAGAGCAGTTCGGCATGATGAGGCTAACTAAGCAGCGGGCAAGGGCAAGACCGAGAAACCTGGCGGCTGCTGAGGACATGCAAAACTTCAGGCGTAGGTGTCGAgAGAACACACATGCTTATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagAGAACAGACATGCTGATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagaaTGTCAAAATCTTCTTTTCTATCGGAATAGAATTCCATTTCGCCCTGATGGTGTATATATTGAACAATTTCACAAGTACTGGTTTGGTGATTACACAAGGCTGGAAAGAGTGCACTCCTACATTCAGTGCTCattagatgaagatgaaaaggaagaatggAAGACAATTTCACTGGATGCACCTTTAAGAGGCtatcaGTTGTTTCCAACTCAAGAGCCAGGGGTAAATAATAGTGCACATGTCCTTACCCCAACAGAAATCAGGtatttccATGAGGATGTGACCGTGAAGAAAAGACTGTTCAAGTCTTACATACTCATGTTGGACTTCTACGGCATAGAACTTGTCAGTCAGGAAACTGGAAAGGTGAAACGTGCAGTAAACTGGAAAGAACGATTTGCAAACCTAAACAGaaacacacacaacaatcttcGCATCACCCGCATCCTAAAGTGCCTGGGTTTACTGGGGTTTTGTCACTATCAAGCACCGCTGGTTCGCTTTCTTCCTTGTGGAGACTCTGGTGAAAGACACACTTCCACGAGTCAAGCAGAGCGTTCTGGACTACTTTATCTTCGCCGTTCTGAACAGGTCTGAACGAAAAGACCTGATCAGATTTGCCTTCCAGCATTTTGAGCCAAAAGAGAAATTTGTGTGGTGTCCTAGAAGGATTCAAAGAAAACTTCGGAAAGGAATCTCACGACAGAAACATCCTTCACAAACACCGGCTCGTGCAAGAAGGGAAGTAATGCATCATGAATCAACTGA
>XM_034314281.1
TACAGGGCTGATTTCACTTCTTGTTTGAGCATGCTAGTTAATTCTCGAGACCCATGAGTAGTAATCCATGAGTACTTACTTTATAAAATGGGCTGTGAGGAAAGTGTCATGGACGACAGTAATAACGAATATGACTCCACATGGGACGATGAGTCTGAAGAAGAGCAGTTCGGCATGATGAGGCTAACTAAGCAGCGGGCAAGGGCAAGACCGAGAAACCTGGCGGCTGCTGAGGACATGCAAAACTTCAGGCGTAGGTGTCGAgAGAACACACATGCTTATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaaGAGAACACACATGCTGATCAATCAAATGGACAAATGACTAGACAAGTGAGCCaagAGAACAGACATGCTGATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagaaTGTCAAAATCTTCTTTTCTATCGGAATAGAATTCCATTTCGCCCTGATGGTGTATATATTGAACAATTTCACAAGTACTGGTTTGGTGATTACACAAGGCTGGAAAGAGTGCACTCCTACATTCAGTGCTCattagatgaagatgaaaaggaagaatggAAGACAATTTCACTGGATGCACCTTTAAGAGGCtatcaGTTGTTTCCAACTCAAGAGCCAGGGGTAAATAATAGTGCACATGTCCTTACCCCAACAGAAATCAGGtatttccATGAGGATGTGACCGTGAAGAAAAGACTGTTCAAGTCTTACATACTCATGTTGGACTTCTACGGCATAGAACTTGTCAGTCAGGAAACTGGAAAGGTGAAACGTGCAGTAAACTGGAAAGAACGATTTGCAAACCTAAACAGaaacacacacaacaatcttcGCATCACCCGCATCCTAAAGTGCCTGGGTTTACTGGGGTTTTGTCACTATCAAGCACCGCTGGTTCGCTTTCTTCCTTGTGGAGACTCTGGTGAAAGACACACTTCCACGAGTCAAGCAGAGCGTTCTGGACTACTTTATCTTCGCCGTTCTGAACAGGTCTGAACGAAAAGACCTGATCAGATTTGCCTTCCAGCATTTTGAGCCAAAAGAGAAATTTGTGTGGTGTCCTAGAAGGATTCAAAGAAAACTTCGGAAAGGAATCTCACGACAGAAACATCCTTCACAAACACCGGCTCGTGCAAGAAGGGAAGTAATGCATCATGAATCAACTGA
>XM_034314282.1
TACAGGGCTGATTTCACTTCTTGTTTGAGCATGCTAGTTAATTCTCGAGACCCATGAGTAGTAATCCATGAGTACTTACTTTATAAAATGGGCTGTGAGGAAAGTGTCATGGACGACAGTAATAACGAATATGACTCCACATGGGACGATGAGTCTGAAGAAGAGCAGTTCGGCATGATGAGGCTAACTAAGCAGCGGGCAAGGGCAAGACCGAGAAACCTGGCGGCTGCTGAGGACATGCAAAACTTCAGGCGTAGGTGTCGAgAGAACACACATGCTTATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagaaTGTCAAAATCTTCTTTTCTATCGGAATAGAATTCCATTTCGCCCTGATGGTGTATATATTGAACAATTTCACAAGTACTGGTTTGGTGATTACACAAGGCTGGAAAGAGTGCACTCCTACATTCAGTGCTCattagatgaagatgaaaaggaagaatggAAGACAATTTCACTGGATGCACCTTTAAGAGGCtatcaGTTGTTTCCAACTCAAGAGCCAGGGGTAAATAATAGTGCACATGTCCTTACCCCAACAGAAATCAGGtatttccATGAGGATGTGACCGTGAAGAAAAGACTGTTCAAGTCTTACATACTCATGTTGGACTTCTACGGCATAGAACTTGTCAGTCAGGAAACTGGAAAGGTGAAACGTGCAGTAAACTGGAAAGAACGATTTGCAAACCTAAACAGaaacacacacaacaatcttcGCATCACCCGCATCCTAAAGTGCCTGGGTTTACTGGGGTTTTGTCACTATCAAGCACCGCTGGTTCGCTTTCTTCCTTGTGGAGACTCTGGTGAAAGACACACTTCCACGAGTCAAGCAGAGCGTTCTGGACTACTTTATCTTCGCCGTTCTGAACAGGTCTGAACGAAAAGACCTGATCAGATTTGCCTTCCAGCATTTTGAGCCAAAAGAGAAATTTGTGTGGTGTCCTAGAAGGATTCAAAGAAAACTTCGGAAAGGAATCTCACGACAGAAACATCCTTCACAAACACCGGCTCGTGCAAGAAGGGAAGTAATGCATCATGAATCAACTGA
>XM_034314283.1
TACAGGGCTGATTTCACTTCTTGTTTGAGCATGCTAGTTAATTCTCGAGACCCATGAGTAGTAATCCATGAGTACTTACTTTATAAAATGGGCTGTGAGGAAAGTGTCATGGACGACAGTAATAACGAATATGACTCCACATGGGACGATGAGTCTGAAGAAGAGCAGTTCGGCATGATGAGGCTAACTAAGCAGCGGGCAAGGGCAAGACCGAGAAACCTGGCGGCTGCTGAGGACATGCAAAACTTCAGGCGTAGGTGTCGAgAGAACACACATGCTTATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaaGAGAACACACATGCTGATCAATCAAATGGACAAATGACTAGACAAGTGAGCCaagAGAACAGACATGCTGATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagaaTGTCAAAATCTTCTTTTCTATCGGAATAGAATTCCATTTCGCCCTGATGGTGTATATATTGAACAATTTCACAAGTACTGGTTTGGTGATTACACAAGGCTGGAAAGAGTGCACTCCTACATTCAGTGCTCattagatgaagatgaaaaggaagaatggAAGACAATTTCACTGGATGCACCTTTAAGAGGCtatcaGTTGTTTCCAACTCAAGAGCCAGGGGTAAATAATAGTGCACATGTCCTTACCCCAACAGAAATCAGGCTATAGAAGAACTTGAATATGGAATATGGAATATGAGACTTTACGAAAGTCAACACTAGAAATGAAAGATTGATCTTAACAGATTATAGCTGAattagtgggttttttttttagtatttccATGAGGATGTGACCGTGAAGA
>XM_034314284.1
TACAGGGCTGATTTCACTTCTTGTTTGAGCATGCTAGTTAATTCTCGAGACCCATGAGTAGTAATCCATGAGTACTTACTTTATAAAATGGGCTGTGAGGAAAGTGTCATGGACGACAGTAATAACGAATATGACTCCACATGGGACGATGAGTCTGAAGAAGAGCAGTTCGGCATGATGAGGCTAACTAAGCAGCGGGCAAGGGCAAGACCGAGAAACCTGGCGGCTGCTGAGGACATGCAAAACTTCAGGCGTAGGTGTCGAgAGAACACACATGCTTATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaaGAGAACACACATGCTGATCAATCAAATGGACAAATGACTAGACAAGTGAGCCaagAGAACAGACATGCTGATCAATCAAATGGCCAAATGACTAGACAAGTGAGCCaagaaTGTCAAAATCTTCTTTTCTATCGGAATAGAATTCCATTTCGCCCTGATGGTGTATATATTGAACAATTTCACAAGTACTGGTTTGGTGATTACACAAGGCTGGAAAGAGTGCACTCCTACATTCAGTGGTTGTTTCCAACTCAAGAGCCAGGGGTAAATAATAGTGCACATGTCCTTACCCCAACAGAAATCAGGCTATAGAAGAACTTGAATATGGAATATGGAATATGAGACTTTACGAAAGTCAACACTAGAAATGAAAGATTGATCTTAACAGATTATAGCTGAattagtgggttttttttttagtatttccATGAGGATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935347.2 False 1143 mRNA 0.44 10 6067054 6071054
XM_034314281.1 True 1197 mRNA 0.43 11 6067054 6071054
XM_034314282.1 False 1089 mRNA 0.44 9 6067054 6071054
XM_034314283.1 False 835 mRNA 0.41 10 6067054 6070487
XM_034314284.1 False 756 mRNA 0.41 9 6067054 6070477

Neighbor

gene id symbol gene type direction distance location
taf4a taf4,taf4a,LOC108436032 coding upstream 468815 5582516 ~ 5598239 (+)
si:ch211-253b8.5 LOC108254983 coding upstream 489458 5557568 ~ 5577596 (+)
bmp7a bmp7,LOC108435091 coding upstream 523030 5520122 ~ 5544024 (+)
LOC113539468 NA coding upstream 549634 5514708 ~ 5517420 (+)
LOC113539749 NA coding upstream 556114 5506993 ~ 5510940 (+)
LOC113539542 NA coding downstream 2504 6073558 ~ 6079806 (+)
LOC113539543 NA coding downstream 13386 6084440 ~ 6090037 (+)
LOC113539546 NA coding downstream 27956 6099010 ~ 6104059 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding downstream 89736 6160790 ~ 6198383 (+)
LOC113539620 NA coding downstream 234623 6305677 ~ 6308696 (+)
G302585 NA non-coding upstream 486075 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 502040 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 505530 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 849629 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 1188679 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 279138 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 564803 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 720264 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 796664 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 827436 6898490 ~ 6900530 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 595493 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1597858 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1788381 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2153968 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 3343473 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 129392 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 427006 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 592914 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1903537 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2410041 8481095 ~ 8561702 (+)

Expression


Co-expression Network