LOC113539546


Basic Information

Item Value
gene id LOC113539546
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6099010 ~ 6104059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935350.2
TTTAAAACTCTTACTCCTGCTGCCTTGATGCCTGTTTAATAGTTAATAAGTAATTTAGGTTGCTTTGTTTGATACTATGTAGGCACATTGTTTAgctattcataaataaaaaatggttcaagaacaacttttatttttactttcacaACTTTTTCACTTTGAAAACAGTGGGCGTGTTTCAGTTTGCTATTCAGCTTTTCAGTTTCTATTTAATGCTATTGAGAAGGAAAGACTTCCTTGTCTCTTCTTCATAACTGGTCTTGAAGGCTCTGTGTAACAAAGCTTGATAGTCTGTGAGACTGAGCATGTACATGGGCAACTCAGAAAACGCTATGAGAGACTATGATTCGACATGGGAAGATGAAGTTGGCTATGAGGACTCTACACAGttctcgACACAATGGTCATGGAGTGCACAAAGGAACATAGCTGCTGCAAGAGATATGCAAAACTACAGACGGAAGTGTCGGAACGTCTATAATGGGACAGATCATGATATGGAGGATGAAGACGTCTCGCTAAATCTGTtgttttaccaaaataagatcCCTTTCAACTTTGATGGCATGCGGATTGAGGATTTTCACATGAACTGGTTTGGTAATTACGAAAGGCTGGAACATGTGCACTGCTACATTCAATGGCTATTTCCAATTCACGAGAAAGGAATGAACGCATCATGTAGGCTTAGCTCAAAAGCGATCAAGCTGTTCCGTAGGGATGAggagatgaagaaaaaattgTTGGTGTCTTACAAGCTCATGTTGGACTTCTATGGCATACAACTTGTCAGTGAGGAAACTGGAGAGGTGAAACGTGCAGTAAACTGGAAAGAGCGATTTGCAAACCTAAATAGaaacacacacaacaatcttcGCATTACCCGCATTTTGAAGTGCCTGGGATTACTGGGGTTTCAGCACTATCAAGAACCGCTGGTTCACTTCTTCCTTGTGGAGACTCTGGTGAGAGGCACACTTCCCAGAGTGAAGCAGAGTGTTCTGGACTACTTTATGTTCGCAGTTGTGGACAAGTCGAAAAGAAAAGAGTTGATCAAATTTGCCTTGTGTTATTTTGAGCCGAAAGAGGAGTTTGTGTGGTGTCCTAGGaggattcaaattaaatttttgaAGGAGGTCGAGCGtgcacagaaagaaacagagatacCAAAAGTGAAGAAATGGAACACAGGCTAGAGAATAAGAGAATGCCAAGTAATTCAACAGTTCAAAGTGTTTAGAATGATCAACAGGGTATAAAATCAAGATAAAATTGTTAGATTACATTGATTTTTGCTACAGAAAAATCAGCAGATAAGAACAGTAGTAAAGATACTTTGTCTACTTGACTGGCCAATGCGTCAAAATGGAAGCTTCCAACAAACCTTTTAACATAACTTCAACATAACAAAGATGCTCAGTCTAAATGTCATCACATACCACATCATGCTGTTGATCATTCTAAAGACACTGTAAATCACACTGTAAATGTACAATAATTATCACACAACCAGTGAAAACAACCAACAGCTTCCAACCAGGGGGAATAAGTACTGAGAACTGGTGGAAACTGaactatttgtttttattaatactaAAATTTTGTATTCTTTTGTTTAAGGCATGGCACTTTGCTGTAAAAATAGTTTCCCCTAGAGAGACAATAAAGGTGAAGTTGAGCACCAAAACCAAGAGGATAAAAACCAAGCAAATACCAATGAACAGGTGTAAGACAAGAAAGACAATCCAGTATCACCTTTAGACAAACTGTTGAAGATAATATGCCTACAAACATTGagacataaagaaataaaggcaAAATTATCATgaaaatttacacataaatgtaGCTAATCATAAAATCACTCTCAGAGATAGGAGAGCAGTATAGGAAAATCTGTTCCTGACAAAAAGGCAGAAATTGGGTTTGTGAGAGatgaaaactaaaaaagaaCATATCCAGACCGTGATGTACATTATATACAAGAATCattaacctcttttttttttttaattgttggtTGACCAACTATTTTAAGGGATCATGCTTTAGGGTGGTGGGGATTAAAAACGTGACTGCTCATTTTTGACTTGTTTATGCTCATGCTGCTAATATGTGTTACTGAAAAATACAATTCTAGCCAATTAGAAAAAGATTAATTACTCTTTTATTACCAGTATACCCAAGTTTATATTGATTTTAGGCAGAACAGATCCTCTGAACTAGCTTAAGCTAATAAGCAAAAACAACAAGTCTGTGAAATTTAACATGCTATGAAGGTATGCTTTAAACTCAGAAAATACATGGACTATGCAATATGCTGATCTAATGAGCTAATACTCAGAAAATaaccttttatattttttgcatatttttagaTGTAAAAACAAGTAGTTGTTTGCCACATCATACAAGAGCTTGTAAACAGGGTTGTAAACTTCTACTTAAACTTCTACTTATACTTGGATCTAtgaataactataaataaagcTAACATTCTGCACTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935350.2 True 2509 mRNA 0.36 8 6099010 6104059

Neighbor

gene id symbol gene type direction distance location
LOC113539543 NA coding upstream 8973 6084440 ~ 6090037 (+)
LOC113539542 NA coding upstream 19204 6073558 ~ 6079806 (+)
LOC113539544 NA coding upstream 27956 6067054 ~ 6071054 (+)
taf4a taf4,taf4a,LOC108436032 coding upstream 500771 5582516 ~ 5598239 (+)
si:ch211-253b8.5 LOC108254983 coding upstream 521414 5557568 ~ 5577596 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding downstream 56731 6160790 ~ 6198383 (+)
LOC113539620 NA coding downstream 201618 6305677 ~ 6308696 (+)
LOC113539691 NA coding downstream 206633 6310692 ~ 6313470 (+)
LOC113539617 tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833 coding downstream 214816 6318875 ~ 6334112 (+)
dnajc16l LOC108255153,LOC108436218 coding downstream 231625 6335684 ~ 6345255 (+)
G302585 NA non-coding upstream 518031 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 533996 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 537486 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 881585 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 1220635 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 246133 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 531798 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 687259 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 763659 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 794431 6898490 ~ 6900530 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 627449 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1629814 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1820337 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2185924 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 3375429 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 96387 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 394001 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 559909 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1870532 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2377036 8481095 ~ 8561702 (+)

Expression


Co-expression Network