atxn7l2a (atxn7l2,LOC106565127)


Basic Information

Item Value
gene id atxn7l2a
gene name atxn7l2,LOC106565127
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2704703 ~ 2714151 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935356.2
GCATACAGGGCTGCTGCCTTCACTCGCGGGAGCGCGCAGTATGACGTAAGTGACTCGCCGCGCCGTGATGATGGCGGTGCGTGAACGCGCAGTTAAAGTAATGGCTGCTCTGGAACGGCGGGTGCCTTGTCTCGATGATTTCGTGGGTCAAAGCTGGAGCGTTTGGGCAGAGAGGATTAACCTGACAGCATCGGACGGGTCCGATGGGGACGATTGCAGCAAGAATGGCAAAAAAACGACGGAAACCATGACACTGAGGAAGGAGGATATGTCGATCTTCGGTCACTATCCGGGACACGACGACTTTTACCTGGTGGTGTGCAGCCACTGCAGTCAGGTGGTGAAGCCACAGGCGTTTGAGAAGCATTGTGAGAGGAGGCACGGCTCGGTCGGAAAGCTCTATGCACACCTGCGCTCCACACCGCCGGCCGGCCAGCAGCGCTCACACGCCCGCCATGGACACGCCCCACCCACCGCCGGCCACGGTGCAGGCGGCTGGAGCGGCAAGAGCCaaggcggaggaggaggagcggcACGCCCGTCGCCCCAATCGCCCTCCACTCCACCTCAGTTTAAACACACCAAGACGCCCAAGGACGGAGTTCGCCTTTCGCCTCTGGAAAAGACGTCCAGTTCTGGTCACTCAGAGTCCACCGTATTCAAGCAGCCTCCACCACTGGAGCCCCCGCGTAGCTCTCCTCCCCCGAGTCTCAGAGACCCGCCGTGGCCCTACGGAGGCCCGTCTCCCAGCCGACCCTCGCCGGGCTCCACCGACAAGTCCCCGGCCCAGAGAGCAGAGTCTGGCTCGGCCAACGCCGCAGCACCGCACGCCCGAAGCAACCGGCCATATAAGACCTCAAAAAAAGAGTGTGACCTGGACAAACACTGTGGCGTGTTGGATCCGGAGAGGAAGAAAGTTTGTACGCGGCTGTTAACCTGCAATaTCCACTCCATTCACCAGCGGCGGAAGGTCGTAGGTCGAAGTAAGAACTTTGACCAGCTTGTGGCGGAGCTGAAGATGGTCTCGAAAAATCGAGAGCGTAGCGCTCAGAGCCACGAGGAATCGGCCACTCAGTCCCCGAGCCCCGAGACTCCCAGAGAGCCGAACGCCTCGCCGCACTGCAGGAGACCCCTGAGCAACTCTCCTGCCTTCAGcAGGACGCGAACATTATCGGAGAACGCCCCCGAGGATGAGAGGGCGGTTCGGGAGGAGGGTGTGGCTCGGGCGTCCTCCCCTCTCACTCAGGGCCGAATCTCCAGTGACGAGAGCGAGGGAGAGGGCAATGACGAACCTGCCGACTGGCACTCCAGCCCCTGGCATCCCAAACCACTCGCGgtgTGTAGGTTTGGTAGTTTTGCTCTGGGTCACGGCGTCTTCACATTCGACAGGCGGCTTCATCACCTGCGGTCCGCTGTGAGTGCCATGGTGGAGAGTCACCTCAGCGCTCACCTGTGGAAGAAAATACCTCAAGCATCTGAGCCTCAGTCCCAGAGTTCCTCAGCCAAGCCTTCAGCCATTCCCTCCTCCCCGTCCTTCACTTCCCATCATTCCAAGCAGAGGGCAGGAAATCCCAGTGCCACCTCCCTCAAGTCATCTTCATTTTCCTCGCACGGAGCAGGCAGGGACAGCTCCTCCAGCAGCAGGGCCTCGGCTCATTCTGAGAAATCCGGAGGTTCCCAGTCCGCAGCGCACTCCAAACCCGCTCAGACTGCCACGCAGCCGGGCACGGGGCGGTCCAGAAACCCCGTCGGCAGACCCAGCAAGCAGCAGCTGCGTCTCAGGGAAACGGAGCGGGCTGAACCGGCCGCTCCCGCAAAGCGGAAAGGCTCTCTGAGCGAAGCCGATACGGTCAGCCCAGACAGGAACTGTGTGAGCCCGGATCGGGACCGAGCCCGGCCGCTCGGCTCTGGCAAAACGGCGCCAGCTCAGATTCCGGCTTTAGCTCCGCCATCATCTCACGGACAGACAAATGGCTCACTGTCGCCGGGCCACAAGCAGAGCCGGGCCGAGCCGTGGCCATTTAAGCGGACTCACGCGCCGGGCCGAACCTCGCCCACGGAGCCAGGCGCATCTGGGCGAGCAGGAAACTCAGGACACCACGGCAGGCCTCCTGGATACGAACACAGAGGCCTGGGCAAGAAGCGCAAAAGCAGCGACTCCTCTCCCCCCTCCAAAGCGCACCGGCTTCCCACCCCCCCTCGCTCCGGCTTCTACCCCTGGAAAGAGAGCAAAGGAGCACCGCTGCCCGTAGGAGGGGAGAAGAAGCTCAGTGCGCCCAAGCCAAAACTCCATCGCTGAGCAAGCCACTAACTCGGGAGCACTGCTAACTTTATGGACTGTGGACCCAAGTCtccagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcggcgggcgtgtgtgcgtgcgtctGCGTGTGTGAATGCGAGGtcgagtgtgttgtgtgtctgaGTCTGGAAGTGTTAGACCAGTGTGGATCATTACAACGATGGTCCTTTTAAAAAGCCAATATATGAATGTGAGTGCGAGTGGATGGCAGATGATGGGGGAGTGAATTTCTCCGTGAATTCAGAAATACCTCACAATCTACTG
>XM_026935357.2
CATACAGGGCTGCTGCCTTCACTCGCGGGAGCGCGCAGTATGACGTAAGTGACTCGCCGCGCCGTGATGATGGCGGTGCGTGAACGCGCAGTTAAAGTAATGGCTGCTCTGGAACGGCGGGTGCCTTGTCTCGATGATTTCGTGGGTCAAAGCTGGAGCGTTTGGGCAGAGAGGATTAACCTGACAGCATCGGACGGGTCCGATGGGGACGATTGCAGCAAGAATGGCAAAAAAACGACGGAAACCATGACACTGAGGAAGGAGGATATGTCGATCTTCGGTCACTATCCGGGACACGACGACTTTTACCTGGTGGTGTGCAGCCACTGCAGTCAGGTGGTGAAGCCACAGGCGTTTGAGAAGCATTGTGAGAGGAGGCACGGCTCGGTCGGAAAGCTCTATGCACACCTGCGCTCCACACCGCCGGCCGGCCAGCAGCGCTCACACGCCCGCCATGGACACGCCCCACCCACCGCCGGCCACGGTGCAGGCGGCTGGAGCGGCAAGAGCCaaggcggaggaggaggagcggcACGCCCGTCGCCCCAATCGCCCTCCACTCCACCTCAGTTTAAACACACCAAGACGCCCAAGGACGGAGTTCGCCTTTCGCCTCTGGAAAAGACGTCCAGTTCTGGTCACTCAGAGTCCACCGTATTCAAGCAGCCTCCACCACTGGAGCCCCCGCGTAGCTCTCCTCCCCCGAGTCTCAGAGACCCGCCGTGGCCCTACGGAGGCCCGTCTCCCAGCCGACCCTCGCCGGGCTCCACCGACAAGTCCCCGGCCCAGAGAGCAGAGTCTGGCTCGGCCAACGCCGCAGCACCGCACGCCCGAAGCAACCGGCCATATAAGACCTCAAAAAAAGAGTGTGACCTGGACAAACACTGTGGCGTGTTGGATCCGGAGAGGAAGAAAGTTTGTACGCGGCTGTTAACCTGCAATaTCCACTCCATTCACCAGCGGCGGAAGGTCGTAGGTCGAAGTAAGAACTTTGACCAGCTTGTGGCGGAGCTGAAGATGGTCTCGAAAAATCGAGAGCGTAGCGCTCAGAGCCACGAGGAATCGGCCACTCAGTCCCCGAGCCCCGAGACTCCCAGAGAGCCGAACGCCTCGCCGCACTGCAGGAGACCCCTGAGCAACTCTCCTGCCTTCAGGACGCGAACATTATCGGAGAACGCCCCCGAGGATGAGAGGGCGGTTCGGGAGGAGGGTGTGGCTCGGGCGTCCTCCCCTCTCACTCAGGGCCGAATCTCCAGTGACGAGAGCGAGGGAGAGGGCAATGACGAACCTGCCGACTGGCACTCCAGCCCCTGGCATCCCAAACCACTCGCGgtgTGTAGGTTTGGTAGTTTTGCTCTGGGTCACGGCGTCTTCACATTCGACAGGCGGCTTCATCACCTGCGGTCCGCTGTGAGTGCCATGGTGGAGAGTCACCTCAGCGCTCACCTGTGGAAGAAAATACCTCAAGCATCTGAGCCTCAGTCCCAGAGTTCCTCAGCCAAGCCTTCAGCCATTCCCTCCTCCCCGTCCTTCACTTCCCATCATTCCAAGCAGAGGGCAGGAAATCCCAGTGCCACCTCCCTCAAGTCATCTTCATTTTCCTCGCACGGAGCAGGCAGGGACAGCTCCTCCAGCAGCAGGGCCTCGGCTCATTCTGAGAAATCCGGAGGTTCCCAGTCCGCAGCGCACTCCAAACCCGCTCAGACTGCCACGCAGCCGGGCACGGGGCGGTCCAGAAACCCCGTCGGCAGACCCAGCAAGCAGCAGCTGCGTCTCAGGGAAACGGAGCGGGCTGAACCGGCCGCTCCCGCAAAGCGGAAAGGCTCTCTGAGCGAAGCCGATACGGTCAGCCCAGACAGGAACTGTGTGAGCCCGGATCGGGACCGAGCCCGGCCGCTCGGCTCTGGCAAAACGGCGCCAGCTCAGATTCCGGCTTTAGCTCCGCCATCATCTCACGGACAGACAAATGGCTCACTGTCGCCGGGCCACAAGCAGAGCCGGGCCGAGCCGTGGCCATTTAAGCGGACTCACGCGCCGGGCCGAACCTCGCCCACGGAGCCAGGCGCATCTGGGCGAGCAGGAAACTCAGGACACCACGGCAGGCCTCCTGGATACGAACACAGAGGCCTGGGCAAGAAGCGCAAAAGCAGCGACTCCTCTCCCCCCTCCAAAGCGCACCGGCTTCCCACCCCCCCTCGCTCCGGCTTCTACCCCTGGAAAGAGAGCAAAGGAGCACCGCTGCCCGTAGGAGGGGAGAAGAAGCTCAGTGCGCCCAAGCCAAAACTCCATCGCTGAGCAAGCCACTAACTCGGGAGCACTGCTAACTTTATGGACTGTGGACCCAAGTCtccagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcggcgggcgtgtgtgcgtgcgtctGCGTGTGTGAATGCGAGGtcgagtgtgttgtgtgtctgaGTCTGGAAGTGTTAGACCAGTGTGGATCATTACAACGATGGTCCTTTTAAAAAGCCAATATATGAATGTGAGTGCGAGTGGATGGCAGATGATGGGGGAGTGAATTTCTCCGTGAATTCAGAAATACCTCACAATCTACTG

Function

symbol description
atxn7l2 Orthologous to human ATXN7L2 (ataxin 7 like 2).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935356.2 True 2620 mRNA 0.61 10 2704703 2714151
XM_026935357.2 False 2616 mRNA 0.61 10 2704704 2714151

Neighbor

gene id symbol gene type direction distance location
sypl2a sypl2 coding upstream 7736 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 63380 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 74982 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 96768 2578374 ~ 2607935 (+)
LOC113539428 LOC108255194 coding upstream 136297 2526719 ~ 2568406 (+)
ldlrad2 ldlrad2 coding downstream 40625 2754776 ~ 2761167 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 49511 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 72734 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 113737 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 131223 2845374 ~ 2881640 (+)
G300827 NA non-coding upstream 28333 2674367 ~ 2676370 (+)
G300723 NA non-coding upstream 186498 2436366 ~ 2518205 (+)
LOC113539650 NA non-coding upstream 317602 2375972 ~ 2387101 (+)
G300700 NA non-coding upstream 318482 2385983 ~ 2386221 (+)
G300689 NA non-coding upstream 349458 2355033 ~ 2355245 (+)
G300838 NA non-coding downstream 2549 2716700 ~ 2717082 (+)
G300837 NA non-coding downstream 10837 2724988 ~ 2725736 (+)
G300839 zbtb40 non-coding downstream 12113 2726264 ~ 2726592 (+)
G300840 NA non-coding downstream 13153 2727304 ~ 2727511 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding downstream 14333 2728484 ~ 2729607 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 515786 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 644062 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1205531 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1210058 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1831947 863258 ~ 872756 (+)
LOC113539549 LOC108254930 other downstream 1511 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1136410 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1444081 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1736889 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2496493 5210644 ~ 5471561 (+)

Expression


Co-expression Network