maf1a (LOC108254834,LOC108425756,LOC106565397)


Basic Information

Item Value
gene id maf1a
gene name LOC108254834,LOC108425756,LOC106565397
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8693677 ~ 8700644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935365.2
GCCGCTTTTCTCTATCTTTCAAATCTACAGGAAGCGAAAACTGCGTCTCGAAAGACATTGCTAGCTCTGTAGCTAATATTACtgacagaaatataaacaaagtagtGTCGCTATTTAAGATAACGATAAGCGAAAGAAAAGGCTTACATAAGCCTTGCGCCTCTGCTTAAGGTCTGATTCACTAGCTGGGATGCCTAATTTTCCTCGTAATATTACCTTTAATGGGAGGTACTGGAAATTTCACAGTAAGAAGGAAGACATATTTATCAGAAATCGAAGTGCAAGACAAACAGCTCTACGACAAACAGCTCtacgtgtgtgtatacatttgCAGTGATCTACAGACAGCGTGACCCTGTTTTATTGTCGCCTCGAGCCGCACGATTTGAAAAAATACTGTTCTGATGGAATCTAACTAGCTAAGAAGCTAACGCTATTACGGCTCGAGTTTCTGCGTGTGTTTTAGCCGAAAGATACTGCTGCAGTAAAGTGTAGCTACCAGTTTTATGTTGGAAACATTAAACATATGGTATATGTGCATTTAGCTACAATTTGTTTATGTAGTAAAGTGCTGGTAGATTACTGGTAGTGAGGCTGAGGGCCCCCGTTTTCGTGAGCTTGTTAAAATAGAGTAAAACAATGAAGCTTTTGGAAAATTCGAGTTTTGAGGCCATTAATACTCAACTCACCATAGAAACTGGAGACTGTAAAATAATCGGACGgATTGAAAGTTACTCCTGCAAAATGGCAGGTGAAGACAAGCAGATGTTTAagcagttctgtcaggagggaCTGCCTCATGTGCTGGAAGCTCTGTCTCCTCCTCAGTCATCCGGAATCAGCCCTAACAAGCTGAGTCACAGTCAAAGTGGCGATGAAGGGGAGGGTCCACTTTCTGATAAGTGCAGCAGGAAGACTCTGTTCTACTTGATTGCTACTCTCAACGAGTCCTTCAGGCCAGACTATGACTTCAGCCGCACCCGAGGACATGACTTCAGTAGAGAGCCCAGTGTCAACTGGGTGTTTAATGCCGTGAATAGTAGCTtgtctgctgctgctggggaGGCATACAGTCGCTTGCAGCCTCAGCTCTGGGAGGCCATTGACAATGAGATCAGTCTGACTGAGTGTGACATTTACAGCTATAATCCAGACCTTGATTCTGACCCATATGGAGAAGAAGGCAACCTGTGGTCCTTCAACTATTTCTTTTACAATAAGAGGCTGAAAAGAATTGTGTTCTTCACATGCCGCTCTGTTAGTCTTTTTATGACTCCACGAGACTCAGGCATTGGAACGGAGCTGGACCTGGACCTGGATGAAGGCAGCtttgaggaggaggagaacatGGATGAGGAGAGGTATCGACCTTTATGTGCCCAGTGAAGATGTCATAAATCCGCTGCCTTGCTCCTGAATGCCtctgaaaaacatttacatgtcTCTTGGAGTCTAATGTCTTTTCCGTTTTATTTcaagtgtttgtttttgctctcaCTATGATAGGATAAATGCTTTTAATAACAGGAACTTAATGAGATCCATacattgattttaattttttagtgtttgtgtgtttctcagtaGTTGTTATTGGActtgttttcctttttgtcACTGACTCCTGAGTAATTCTGCACACTGACATAGGATCACTTGATTTTCCTACATTGTCAAAATTcctgttgactttttttttttttaaaaaaaaatttgctatttacattatataaagtGAATAGTTGTATTTTA

Function

NR:

description
repressor of RNA polymerase III transcription MAF1 homolog isoform X2

GO:

id name namespace
GO:0016480 negative regulation of transcription by RNA polymerase III biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935365.2 True 1752 mRNA 0.41 7 8693677 8700644

Neighbor

gene id symbol gene type direction distance location
zc3h11a zc3h11a coding upstream 10205 8673179 ~ 8683472 (+)
chia.2 LOC108280999,LOC108425699 coding upstream 33848 8656659 ~ 8659829 (+)
chia.1 LOC108255291 coding upstream 56867 8632261 ~ 8636810 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding upstream 63475 8587864 ~ 8630202 (+)
csf1a LOC108280990 coding upstream 433014 8250525 ~ 8260663 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding downstream 112937 8813581 ~ 8819844 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding downstream 168375 8869019 ~ 8879676 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding downstream 201029 8901673 ~ 8908531 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 217794 8918438 ~ 8926213 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding downstream 527798 9228442 ~ 9237329 (+)
G304566 NA non-coding upstream 3968 8689493 ~ 8689709 (+)
LOC117599908 NA non-coding upstream 21980 8669638 ~ 8671697 (+)
G304453 NA non-coding upstream 213088 8480377 ~ 8480589 (+)
G304450 NA non-coding upstream 221363 8472084 ~ 8472314 (+)
G304367 ppp1r15b non-coding upstream 291544 8394722 ~ 8402133 (+)
G304575 NA non-coding downstream 17580 8718224 ~ 8718463 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding downstream 55954 8756598 ~ 8761643 (+)
G304600 NA non-coding downstream 61287 8761931 ~ 8762253 (+)
G304669 NA non-coding downstream 238415 8939059 ~ 8939687 (+)
LOC113539633 NA non-coding downstream 304047 9004691 ~ 9016994 (+)
nfasca nfasc other upstream 131975 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 666748 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 1914319 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2191041 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2399928 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 835481 9536125 ~ 9551761 (+)
G305515 NA other downstream 1812027 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 2063630 10764274 ~ 10773442 (+)
G305727 NA other downstream 2411095 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2440592 11141236 ~ 11178473 (+)

Expression


Co-expression Network