taf4a (taf4,taf4a,LOC108436032)


Basic Information

Item Value
gene id taf4a
gene name taf4,taf4a,LOC108436032
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5582516 ~ 5598239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935414.2
CATGCGCAGTTTCATTTCGTCCAGAGCTCCTCACGGTTCACATCGAAGATGGCGGCAGGCTTCGACCTGCTGGTGGAGGATTCTCTAATTAAAAGAGTGGGCAAGAAACTTTTTAGCGATATTGCAGGTTGTGCCAGAAACGAGCGcagcacattttattacattaactCCGAGAGAAGAGCACGGGCAGTTGTAAAGAACAATGCTAACTACGGGATAGGAGGGAATGCAACTAGCTAACGTTAACATTTGTGAGCAAAGAGGCTATTGGCTACGAGACTTGTTTTTAAAGCAGGTAATCTCGCAGTGTGTTAAACTGCACTACATGTTCAAAATATTTCTTCACCACAAGAGTTAAAGCGATAAGGGCGCTCGATAGAGTCTGGTTTACATCGTGACCCGCGCTCCCCTCACTCTTCACACGTTTGTTTCCTACTTCGCAGACGTACAGGAGGGAAAGGGGACGCTTTCTGAGCCCCGGCTGTTAGCTGTGGATGCGAATTAAAACACGGATTACTCCAGCCGCTTCGCTACAGACTTCAGCGGAGCACGGTTAACGCGATCCGGTGTCTCCAAATGCTATGGTAACTACTTTGCCTGGCCACGAAGTCAAGCTCGGGACGTCAACAGTACAAACTTTGGACGGAGGCGATGCGATGGATCCGCGTTCAGAAAGCACGCCAGCGTCGAGCGGCTCATCGAGCGATCCAGCCGCTTCAGCTACCGTTAGCGTTACCGTGCCGGTGGTCAACAACGGGCCCGGAATAGCGAAAGGACTTGTGACTGCACCTTCTACTTCAAACACGGTGATCCAGGCGTCTTTCGTGAGCGCGCCGAGCGTGAACGTGTCTAGCGCGCCAGGCGGAACCGCCTCCGCCTCCGCCACCATCAGGCCATCTATGCAAGCCGCGACTTTAACCATTAACGGGAATAATAAGGCCAGCTGCGTGCTGACAGCTGCGCCCAGTGTAGCCACGGCCACGGGAAGCACGCCGCTCACAAACGCCCAGCCTCCTGTCAGTGTGAGCGCGAGTCCGGCGGTGTCAATCAAAGCCGAGTCACCGCAGACCGTGATCCAGAGCGCGGCCCATACCGGATCTCCGCAGGTCTCCCCCGGGGCAGCCAAAGGCGCTGGGCTGATGCATGCGACGACGGCGGTGAGAGGCGGAGCCCCGGTGACAGGAGGCGGGGCCACGGTGGCAGCAGCCGCGGCGGGGGGCGTGAGGACCATCGCGCCGCAACAGGTGCTCGCGCCCCGCCTCCCACAGAGCACCCCGGGCCAGCCGAGCATCCACAACATCCAACTTCCTCCAGGTATGGTGCTGGTGCGAAGCGAAGCCGGACAGTTGCTAATGATCCCTCAGCAAGTGTTGGCTCATATGCAGGCCACACGCGCTGCCACTCCCGCCAGCACCACGCCCGGACAGGTCACTTCCACACAGACCCCTGGTGCTCCCATCATGGCCAGACCAGTGACTCCCACCATCATCAAGCAGGGCTCACCCACAACCAGCAGCACCACTGCTCCCACACTGCAGAGGCCACCCATGCAGGTGCAATCGGTGGGCTCTGTGTTGGCAGTGCAGCCGGGCACCGCCCAGAGGATGGTAACTCCCACTACTGGGACCAGTGTCGCCTTGGCAACGGAAACCATGGAGAACGTGAAGAAGTGTAAGAACTTCCTGTCCACGCTGATCAAGCTGGCCACCAGCGCGAAGCAGTCATCGCAAACGGCTGCTAACGTCAAAGATCTGGTTAAGAACTtgctggAAGGGACAATTGAAGCGGAGGACTTCACTAGCAGGTTATACAAGGAGCTTAACTCTTCACCCCAGCCTTATCTCGTGCCTTTCCTAAAGAGGAGTCTTCCTGCTCTGAGAAAACTCACCCCGGACTCCCTGGCCTTCATCCAGCAGAGCCAAGGCCTGCAGCCCACCAAACCTGCAGCCACCGTGGTGCTGACCAACACTACGACAGCTAACGCTGCCACTGTTGCTACCGCAACTCCTGCTACATCTGTACCTTCTGCAACTCCTTCAATTTCCGCAGGCACTGCAGCAACCGCTGCATCTGCTGCAGCTGCCACGGCCCCGCGCACACTCACCCAGCCCGCTCTCGCCACCACCAGCCAGCCTGCCTCACTGGTGTTGCAGTCTCAGCAGCAAGGTGCGATCGTGAAGTCCCCCCAGGTTACCCTGGCTACTCCCATGGTAACGCTCAGGGGTCAGCCGCACAGCCGCATCGTAGTGGGGCAAACTCAAGTGCAGGTCAAACAGATTAACacagTGTCTGTGAAGCCCGGGATGGTGAGTGGAGCGAAGGTCTCTCCCAGCCCTGTGGCTCTTAACGCAGCTCAGAAGAACAAGCTGAAGGATGCCTCTGGGGGGACGTTcaaGGATGATGACGATATCAACGATGTAGCCTCCATGGCCGGTGTGAATCTGTCGGAGGAGAGCGCACGAATCCTGGCCACCAACTCGGAGTTAGTGGGGGCCGTGACTCGCTCGTGCAAGGATGAAGCCTTTCTGTTCTCAGCCGCATTGCAGCGCAGGATACTGGACATCGGTAAACGGTTTGGAGTGACAGACCTGGGCCCCGAGGTGGTAAACTTGGTGTCTCATGCCACTCAGCAGAGACTGCAGAATCTTTTAGAGAAAGTCACGGTCATTGCACAGCAAAAGAACATGAACTATAAGGAGGATGCACGGTTCGAGCAGGTGACTGATGTTCGCGCGCAGCTCAAATTCTTCGAACAGCTGGACCAGCTGGAAAAACAGAGGAAGGAAGAGCAGGAGAGGGAAATTTTAATGAAGGCAGCCAagTCTCGGTCTCGGCAGGAGGACCCCGAGCAGTTGCGGTTGAAACAAAAGGCCAAAGAGatgcagcagcaggagctGGCTCAGATAAGACAGAGAGATGCGAACCTGACAGCGCTGGCTGCTATCGGACCCAGGAAAAAGAGGAAACTTGACTCACCTGCTCTTGGCACTGATGCGGAGGGTTCCGGGTCTTCATCGAGCTCGTCTGTGGGTTTGAGTGGCGGCGCATCACGGCAGTTCACCCGCCAACGCATCACGCGTGTAAACCTCAGGGATCTGCTCTTCTGCctagagaatgagagagaaagcagcCGCTCACAGCTGCTCTACCGGGCTCTGCTCAAATAGCAGCTTGATTAGAGAGCAGTGCTCACATGAACGTCTGATTACGGAGCAGTGCGCACACAGCAGCATAATTACAGTGCAGCGCTCAGGTCGCAGCTCCATTTCAGAGCAGTGCTCAAATAGAAGGTGGAGTAGAGAGCACTACAGAGCAGCCTGATTACAGAGCAGCGTTCAGACAGCAGCTGCTCTGTCGAGCTGATGGGCTGCGTTTAAACAGCAGCGCCTCTGATGGATGCAGCTCAAACCGTGAGCAGCTCCGCTGGATGCTGCTTTAATAGTGAATCCGCTACTGTGCACAGCTCGAGTAGCGGAAACCGTACGGCAGCGCTGCTCACATAGCAACCTGGCTCTACTGCTCCGTCTCGCGTCCAGCCGTCGTCTTCTCTCTCCTCCCGGTGTGTCatcttctctttgtctttctttctcatgcCATCTTTGTATCAATTTCATGCTTGTCCTTTGTTTCCTCTACACTCTTTTCTAACTTAGTCATTCAAACGCCCACACACTTTCTCAAGGTCTCTTACTCCTGTCCGCCTTTGTTTCACGTTGTTTTTAGCTTCCTTGTGCTCTTGATTTTAATCTAATGAAAATGTGTCTAAAGAAATTTGCAGTTATATATCCAATGTTTTTCTTAGAGGGTGGCTTTGTAATGTGCAAATTGccgatgtaaaaaaaaaaaaaagagaa
>XM_026935415.2
CATGCGCAGTTTCATTTCGTCCAGAGCTCCTCACGGTTCACATCGAAGATGGCGGCAGGCTTCGACCTGCTGGTGGAGGATTCTCTAATTAAAAGAGTGGGCAAGAAACTTTTTAGCGATATTGCAGGTTGTGCCAGAAACGAGCGcagcacattttattacattaactCCGAGAGAAGAGCACGGGCAGTTGTAAAGAACAATGCTAACTACGGGATAGGAGGGAATGCAACTAGCTAACGTTAACATTTGTGAGCAAAGAGGCTATTGGCTACGAGACTTGTTTTTAAAGCAGACGTACAGGAGGGAAAGGGGACGCTTTCTGAGCCCCGGCTGTTAGCTGTGGATGCGAATTAAAACACGGATTACTCCAGCCGCTTCGCTACAGACTTCAGCGGAGCACGGTTAACGCGATCCGGTGTCTCCAAATGCTATGGTAACTACTTTGCCTGGCCACGAAGTCAAGCTCGGGACGTCAACAGTACAAACTTTGGACGGAGGCGATGCGATGGATCCGCGTTCAGAAAGCACGCCAGCGTCGAGCGGCTCATCGAGCGATCCAGCCGCTTCAGCTACCGTTAGCGTTACCGTGCCGGTGGTCAACAACGGGCCCGGAATAGCGAAAGGACTTGTGACTGCACCTTCTACTTCAAACACGGTGATCCAGGCGTCTTTCGTGAGCGCGCCGAGCGTGAACGTGTCTAGCGCGCCAGGCGGAACCGCCTCCGCCTCCGCCACCATCAGGCCATCTATGCAAGCCGCGACTTTAACCATTAACGGGAATAATAAGGCCAGCTGCGTGCTGACAGCTGCGCCCAGTGTAGCCACGGCCACGGGAAGCACGCCGCTCACAAACGCCCAGCCTCCTGTCAGTGTGAGCGCGAGTCCGGCGGTGTCAATCAAAGCCGAGTCACCGCAGACCGTGATCCAGAGCGCGGCCCATACCGGATCTCCGCAGGTCTCCCCCGGGGCAGCCAAAGGCGCTGGGCTGATGCATGCGACGACGGCGGTGAGAGGCGGAGCCCCGGTGACAGGAGGCGGGGCCACGGTGGCAGCAGCCGCGGCGGGGGGCGTGAGGACCATCGCGCCGCAACAGGTGCTCGCGCCCCGCCTCCCACAGAGCACCCCGGGCCAGCCGAGCATCCACAACATCCAACTTCCTCCAGGTATGGTGCTGGTGCGAAGCGAAGCCGGACAGTTGCTAATGATCCCTCAGCAAGTGTTGGCTCATATGCAGGCCACACGCGCTGCCACTCCCGCCAGCACCACGCCCGGACAGGTCACTTCCACACAGACCCCTGGTGCTCCCATCATGGCCAGACCAGTGACTCCCACCATCATCAAGCAGGGCTCACCCACAACCAGCAGCACCACTGCTCCCACACTGCAGAGGCCACCCATGCAGGTGCAATCGGTGGGCTCTGTGTTGGCAGTGCAGCCGGGCACCGCCCAGAGGATGGTAACTCCCACTACTGGGACCAGTGTCGCCTTGGCAACGGAAACCATGGAGAACGTGAAGAAGTGTAAGAACTTCCTGTCCACGCTGATCAAGCTGGCCACCAGCGCGAAGCAGTCATCGCAAACGGCTGCTAACGTCAAAGATCTGGTTAAGAACTtgctggAAGGGACAATTGAAGCGGAGGACTTCACTAGCAGGTTATACAAGGAGCTTAACTCTTCACCCCAGCCTTATCTCGTGCCTTTCCTAAAGAGGAGTCTTCCTGCTCTGAGAAAACTCACCCCGGACTCCCTGGCCTTCATCCAGCAGAGCCAAGGCCTGCAGCCCACCAAACCTGCAGCCACCGTGGTGCTGACCAACACTACGACAGCTAACGCTGCCACTGTTGCTACCGCAACTCCTGCTACATCTGTACCTTCTGCAACTCCTTCAATTTCCGCAGGCACTGCAGCAACCGCTGCATCTGCTGCAGCTGCCACGGCCCCGCGCACACTCACCCAGCCCGCTCTCGCCACCACCAGCCAGCCTGCCTCACTGGTGTTGCAGTCTCAGCAGCAAGGTGCGATCGTGAAGTCCCCCCAGGTTACCCTGGCTACTCCCATGGTAACGCTCAGGGGTCAGCCGCACAGCCGCATCGTAGTGGGGCAAACTCAAGTGCAGGTCAAACAGATTAACacagTGTCTGTGAAGCCCGGGATGGTGAGTGGAGCGAAGGTCTCTCCCAGCCCTGTGGCTCTTAACGCAGCTCAGAAGAACAAGCTGAAGGATGCCTCTGGGGGGACGTTcaaGGATGATGACGATATCAACGATGTAGCCTCCATGGCCGGTGTGAATCTGTCGGAGGAGAGCGCACGAATCCTGGCCACCAACTCGGAGTTAGTGGGGGCCGTGACTCGCTCGTGCAAGGATGAAGCCTTTCTGTTCTCAGCCGCATTGCAGCGCAGGATACTGGACATCGGTAAACGGTTTGGAGTGACAGACCTGGGCCCCGAGGTGGTAAACTTGGTGTCTCATGCCACTCAGCAGAGACTGCAGAATCTTTTAGAGAAAGTCACGGTCATTGCACAGCAAAAGAACATGAACTATAAGGAGGATGCACGGTTCGAGCAGGTGACTGATGTTCGCGCGCAGCTCAAATTCTTCGAACAGCTGGACCAGCTGGAAAAACAGAGGAAGGAAGAGCAGGAGAGGGAAATTTTAATGAAGGCAGCCAagTCTCGGTCTCGGCAGGAGGACCCCGAGCAGTTGCGGTTGAAACAAAAGGCCAAAGAGatgcagcagcaggagctGGCTCAGATAAGACAGAGAGATGCGAACCTGACAGCGCTGGCTGCTATCGGACCCAGGAAAAAGAGGAAACTTGACTCACCTGCTCTTGGCACTGATGCGGAGGGTTCCGGGTCTTCATCGAGCTCGTCTGTGGGTTTGAGTGGCGGCGCATCACGGCAGTTCACCCGCCAACGCATCACGCGTGTAAACCTCAGGGATCTGCTCTTCTGCctagagaatgagagagaaagcagcCGCTCACAGCTGCTCTACCGGGCTCTGCTCAAATAGCAGCTTGATTAGAGAGCAGTGCTCACATGAACGTCTGATTACGGAGCAGTGCGCACACAGCAGCATAATTACAGTGCAGCGCTCAGGTCGCAGCTCCATTTCAGAGCAGTGCTCAAATAGAAGGTGGAGTAGAGAGCACTACAGAGCAGCCTGATTACAGAGCAGCGTTCAGACAGCAGCTGCTCTGTCGAGCTGATGGGCTGCGTTTAAACAGCAGCGCCTCTGATGGATGCAGCTCAAACCGTGAGCAGCTCCGCTGGATGCTGCTTTAATAGTGAATCCGCTACTGTGCACAGCTCGAGTAGCGGAAACCGTACGGCAGCGCTGCTCACATAGCAACCTGGCTCTACTGCTCCGTCTCGCGTCCAGCCGTCGTCTTCTCTCTCCTCCCGGTGTGTCatcttctctttgtctttctttctcatgcCATCTTTGTATCAATTTCATGCTTGTCCTTTGTTTCCTCTACACTCTTTTCTAACTTAGTCATTCAAACGCCCACACACTTTCTCAAGGTCTCTTACTCCTGTCCGCCTTTGTTTCACGTTGTTTTTAGCTTCCTTGTGCTCTTGATTTTAATCTAATGAAAATGTGTCTAAAGAAATTTGCAGTTATATATCCAATGTTTTTCTTAGAGGGTGGCTTTGTAATGTGCAAATTGccgatgtaaaaaaaaaaaaaagagaa

Function

symbol description
taf4a Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).
taf4 Enables aryl hydrocarbon receptor binding activity. Contributes to RNA polymerase II general transcription initiation factor activity and core promoter sequence-specific DNA binding activity. Involved in transcription initiation from RNA polymerase II promoter. Located in chromatin; cytosol; and nucleoplasm. Part of MLL1 complex; transcription factor TFIID complex; and transcription factor TFTC complex.

NR:

description
transcription initiation factor TFIID subunit 4-like isoform X4

GO: NA

KEGG:

id description
K03129 TAF4; transcription initiation factor TFIID subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935414.2 True 3854 mRNA 0.55 15 5582516 5598239
XM_026935415.2 False 3706 mRNA 0.55 16 5582516 5598239

Neighbor

gene id symbol gene type direction distance location
si:ch211-253b8.5 LOC108254983 coding upstream 4920 5557568 ~ 5577596 (+)
bmp7a bmp7,LOC108435091 coding upstream 38492 5520122 ~ 5544024 (+)
LOC113539468 NA coding upstream 65096 5514708 ~ 5517420 (+)
LOC113539749 NA coding upstream 71576 5506993 ~ 5510940 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 96004 5473890 ~ 5486512 (+)
LOC113539544 NA coding downstream 468815 6067054 ~ 6071054 (+)
LOC113539542 NA coding downstream 475319 6073558 ~ 6079806 (+)
LOC113539543 NA coding downstream 486201 6084440 ~ 6090037 (+)
LOC113539546 NA coding downstream 500771 6099010 ~ 6104059 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding downstream 562551 6160790 ~ 6198383 (+)
G302585 NA non-coding upstream 1537 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 17502 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 20992 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 365091 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 704141 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 751953 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 1037618 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 1193079 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 1269479 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 1300251 6898490 ~ 6900530 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 110955 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1113320 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1303843 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 1669430 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 2858935 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 602207 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 899821 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1065729 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 2376352 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2882856 8481095 ~ 8561702 (+)

Expression


Co-expression Network