si:ch211-253b8.5 (LOC108254983)


Basic Information

Item Value
gene id si:ch211-253b8.5
gene name LOC108254983
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5557568 ~ 5577596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935416.2
TGCTCCACTGGCCTAAGCCCTCTGTTTTCAGTCTCCTAAGTTAGACTGTGTGTGACAGGGATGAGGGGATGAGCTTCATTTCTGTGAATGTGTCAGGATTCTGAACATGCTGAAATAggcagagaaaGGATCATGAACTCAAAGGGGGCAAACCTACACAACAAACGTCAGCCATCTGAAACAGAGAACACTCTGAGGCTTCCGGACATGGACGCGGCCCAGCAGCTGAAGCTCAGAGAAAGACAGCGCTTCTTTGAGGAGGCGTTCCAGCACGACGTGGATGTTTACTTCTCCTCAGCACACTTGCAGATAGATTACAAGAGGGCTCCCATGAGCAGCATCTCGTCCATGGAGGTCAACGTGGACATGCTGGAGCAAATGGACCTTTTGGACATTTCAGATCAGGAGGCCCTGGATGTGTTTCTCGCCTCGACTGAGGAGGACGACGCATGTTCATGTCCGCTAGAAGGTCTTGGCGGCAGTAGCGACATTGATGCTGCGCTGAGGGAAGAAATCTCCATGAGAGTCCCAGACACCTGTGAGCTCAAATCACGGATATCCTCCACTTCCTCCACCGCCACCTCCGACAGCCAGGGGGAGGACGGAGCCGAAACCCCCGTGGTTCAGTCGGATGATGAAGATgttcatgatgatgatgggcTTTTGATAAACGGTACACCTCCAGCCAACGGTGCAGGAAGAGAACCTGAGCTGTCACTATGAATGGGTCACCAGTTACTTCTGATGAATCGTGTAGCCCAATGTTTGTGTGCTGTTAAAGACTTTCTCTGGTAGGTTGCCTGGTTCTAGCCAAGTTCTACTGATCATAAACTTAAATGGATTCTAGTATGCTCATATTTCTTCGTCTATGATGAAAATTTCTGTTCACCTGAACTGCTGCTGTAGATTATAGTGCTTATAGACGTTTGCATATAGGCCACGGTCCATCTTGTATTACTTTTAATGACTATGTAATGGGAGAGTAGCAAAATCTCATTCACTACAAATTAATGACGGCGGTATTAGAAATATACCATTTGGCTTAGTTTTCTGCCACATGAAATGTGCATCAATATACTGTGCATTACTGTCCAGTCTCAGTCTTCATggctctgtatttttttttttttcatgccttGAAGTCATGTCTTTACTTGATCTCCACAACacgtaatatttttaatatcaaaataaaGGCAAATCCAACATTGGAATATTGGTATTTGAGTA

Function

NR:

description
PREDICTED: dysbindin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935416.2 True 1230 mRNA 0.46 5 5557568 5577596

Neighbor

gene id symbol gene type direction distance location
bmp7a bmp7,LOC108435091 coding upstream 13544 5520122 ~ 5544024 (+)
LOC113539468 NA coding upstream 40148 5514708 ~ 5517420 (+)
LOC113539749 NA coding upstream 46628 5506993 ~ 5510940 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 71056 5473890 ~ 5486512 (+)
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding upstream 816719 4695159 ~ 4740849 (+)
taf4a taf4,taf4a,LOC108436032 coding downstream 4920 5582516 ~ 5598239 (+)
LOC113539544 NA coding downstream 489458 6067054 ~ 6071054 (+)
LOC113539542 NA coding downstream 495962 6073558 ~ 6079806 (+)
LOC113539543 NA coding downstream 506844 6084440 ~ 6090037 (+)
LOC113539546 NA coding downstream 521414 6099010 ~ 6104059 (+)
G302530 NA non-coding upstream 340143 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 679193 4837152 ~ 4878375 (+)
G302360 NA non-coding upstream 736669 4820692 ~ 4820899 (+)
G302281 NA non-coding upstream 824507 4732153 ~ 4733061 (+)
G301923 NA non-coding upstream 1262052 4295308 ~ 4295516 (+)
G302585 NA non-coding downstream 37 5577633 ~ 5580979 (+)
G303181 NA non-coding downstream 772596 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 1058261 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 1213722 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 1290122 6867718 ~ 6870772 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 86007 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1088372 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1278895 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 1644482 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 2833987 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 622850 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 920464 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1086372 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 2396995 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2903499 8481095 ~ 8561702 (+)

Expression


Co-expression Network