gnl3 (gnl3)


Basic Information

Item Value
gene id gnl3
gene name gnl3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4666876 ~ 4673687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935455.2
CACACGCATTTGGACTCAGTTCGCGCGAGCACGAGCGCGAGCGCAAGCGGAACCGGAAACAGATAGTGAGCGAGCTTTCGCACGGAGACTCCGCGTGCGAGGAAAGCGCGTGGCAACGACAACCATGAAGCGACCAAagTTAAAAAAGGCGAGTAAGCGCATGACCTGCGCCAAACGTTTTAAAATCCAGAAAAAGGTTCGAGAACATCACAGAAAACTCAGGAAAGAGGCGAAGAAGAGCGGAATCAGACGCAAGATCAAGAAGGACATTGGCGTCCCGAACAGCGCACCGTTTAAGGAGGAAGTCCTCAGAGAAGCAGAGCAGAGAAAGCAAGAGCTTGAagagctgaaagagaaaaacagactaGCGAAGCAGAAGGAACGAgctgagaagagaaagaagggcAAAGAAGAAAGCAGTGAGGACACGCAggcaaagaaaaggaaagtgaaaaagGAGGAGAAAGTGAAAGCGCAGAGGGAAGCGAGGGCAGCTGTCGCAAAAGAGAAAAGCTCAAAGAGGTTCCGATGCAGCGAATTGAATAAGGTTATTGAGGCCTCTGACGTGATACTGGAAGTCCTGGATGCCAGGGACCCTATGGGCTGCCGCTGTACTCAGCTAGAGGAAGCAGTTTTAAAACACAAGGGGAAGAAACGGCTGCTGTTTATACTAAACAAGATCGATCTTGTGCCCAAAGACAATCTGGAGAAGTGGGTACAATATCTTCAAGCACAGTGTCCTACATTTGTCTTCAAATCATCTGCACACCTCCAGGACAGGACTGTGCTTGAGAAGAAGCAGAGAGCTGCCAACAGTACCGCTGACCAGAACAGACCAGGAGCGGCCTTCGGCTGTGATTCTCTCATGCAGATACTCAACCAGTTGGCCAACAACCAAGGCAGTGAGACTATGCTCAAAGTCGGTGTTGTCGGTTTCCCTAATGTTGGAAAGAGCAGCATCATAAACACTTTAAAAGGCATCAGAGCGTGTAATGCTGGAGTACAGCGAGGACTGACCAAATGTATGCAGGAAGTGCATATCTCTAAAAAGGTGAAGATGATCGACAGCCCAGCCATAGTGGCAGCTCCGTCTAACTCCGCTGAGAAGCTGGCTCTGAGGAGTCTACAGCTGGACGATAAAGAGCAGAATCCTCTCGAAGCTGTCAAGTCTGTGTTGAAACAGTGCAACCAGCAGCATATCATGCTACAGTACAACGTCCCCGACTACAGAAACTCGCTGGAGTTTTTAACCTTCTTCGCCAAGAAGCGTGGCTTGCTGCAGAAAGGTGCGGTTCCCAACACGGAGCAGGCCGCAACTGTGTTTCTCAATGACTGGACCGGAGCTAAACTGAGCTTCTATAGCAAAGTACCAGAGCGAGACGGCCTCCCTCCGCACCTCACTGAAGCCATGGTTACAGAAATGCAGACAGGTGTGGACTTGGACAGAATGAAAATGGGCAACGCGCAGATTATTAAACGTGTGCGAAATCCAAAACTGTCGACCACTATAGTGTTCAACTCGAAGGGCCTGACTGCTGGAATTCTGAATGTCAGTGAAATCccagaagaaaaacacacaccgggggaggaagaggagcaggaggaggaagaggaagaggagcaggaagaggaggatgaggatgatgatgaggatgatgatgaggatgatgatgaggatgaggatgatgatgatgaagaagaggacATTTTTGAGGAAACAGAAGAAATGGAGGACAGTGAGGAGATTGAGACCCCAGACTTAAAGAAGACCCAAACTCAGAAATCACGTAAACAGAAGAAAGGAAATGCAAACCCTGCTTCTGTCAACATTGATCTGTTGTCTGCGCACAAGAATGACGATGACGCCTATGATTTCAGCACGGACTTTGTATAAGCTGTCACCTCCACAAAGAACAGATTTCACCTGGAAGAGTCAGCCGCTGTGTGAACTGTGATATATCTATGGCATATGTAATCCACTGACTGAAAGATCTGgctgaaaacacattttctgtcGGTCTGACAGAACCAGTTGTATATATGACGGATTATTAAACtaacttttaattttctgtacTTTAAGTGTCAGTTGTCATTTTTAAGTTTGAGGGACCTTCTGAAATGTCCACTGCTTGTATCATATATCTACAACCATGCAAGCAAACATTCTCATTATCATAACAACTGCTTGAAAGACCAACTGCACTGAATGttacttcttaaaataaaacttctaccaca

Function

symbol description
gnl3 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in head; immature eye; midbrain; and somite. Orthologous to human GNL3 (G protein nucleolar 3).

NR:

description
guanine nucleotide-binding protein-like 3 isoform X2

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0003407 neural retina development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0007096 regulation of exit from mitosis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935455.2 True 2241 mRNA 0.47 15 4666876 4673687

Neighbor

gene id symbol gene type direction distance location
sfmbt1 sfmbt1 coding upstream 217499 4432525 ~ 4449377 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding upstream 248110 4390352 ~ 4418766 (+)
fgd5a LOC108255103,LOC108435806 coding upstream 286217 4334165 ~ 4380659 (+)
fezf2 fezf2 coding upstream 374508 4289572 ~ 4292368 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding upstream 581861 4080436 ~ 4085015 (+)
spcs1 spcs1 coding downstream 7343 4681030 ~ 4683551 (+)
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding downstream 21472 4695159 ~ 4740849 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 800203 5473890 ~ 5486512 (+)
LOC113539749 NA coding downstream 833306 5506993 ~ 5510940 (+)
LOC113539468 NA coding downstream 841021 5514708 ~ 5517420 (+)
G301923 NA non-coding upstream 371360 4295308 ~ 4295516 (+)
G301921 NA non-coding upstream 372143 4294467 ~ 4294733 (+)
G301881 NA non-coding upstream 456615 4132280 ~ 4210261 (+)
G302281 NA non-coding downstream 58466 4732153 ~ 4733061 (+)
G302360 NA non-coding downstream 147005 4820692 ~ 4820899 (+)
LOC117599916 NA non-coding downstream 163465 4837152 ~ 4878375 (+)
G302530 NA non-coding downstream 501883 5175570 ~ 5217425 (+)
G302575 NA non-coding downstream 848847 5522534 ~ 5565014 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 197680 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 388203 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 753790 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1943295 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2477959 2141522 ~ 2188917 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 536957 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 1526759 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 1824373 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1990281 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 3300904 7974591 ~ 8026929 (+)

Expression


Co-expression Network