spcs1 (spcs1)


Basic Information

Item Value
gene id spcs1
gene name spcs1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 4681030 ~ 4683551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935468.2
TCACTCAACACTCGGGTCCTTCTCAAATCTACGTACGCTGTTTTGTGACCGGAAATCCTGCTTTCAtagtttaatctgtttattagaggcttcttctgtctttttttaaatttcaaaatgttttccatGTTTAATTCCATCCCAACTCACATGGACTATAAAGGTCAGAAACTTGCAGAGCAGATTTTCCAAGGCGTCATCCTGGTCTCAGCTGTCATTGGGTTCATTTACGGTCTGATTATTGAGCAGTTTGGATGGACTGTTTATATAATGTTAGCCGGATTTGCCATCTCCTGTTTGCTCACACTGCCTCCATGGCCCATGTACAGACGAAACCCTCTGACGTGGCAGCCTATCGTACAGGAGACGCCTGAGACCCGTGAAAAGCCTCAGGAGAacttaaagaagaagaaacacaaGTAGAAGCGTGCTCTGCTCTGTTTGGGCTGCGGGACGACACGTACGTGCAGCGGACATGGACGGCTTCAACAACTCACTTCACTGTTTTCATGTAAAATTCCACACATGCTTAATAAAAAAGATTATTTGTATTATA

Function

symbol description
spcs1 Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SPCS1 (signal peptidase complex subunit 1).

NR:

description
signal peptidase complex subunit 1-like

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12946 SPCS1; signal peptidase complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935468.2 True 556 mRNA 0.43 4 4681030 4683551

Neighbor

gene id symbol gene type direction distance location
gnl3 gnl3 coding upstream 7343 4666876 ~ 4673687 (+)
sfmbt1 sfmbt1 coding upstream 231653 4432525 ~ 4449377 (+)
prkcdb prkcd,LOC108254977,LOC108435819,LOC107656045,LOC107600299,LOC107696837 coding upstream 262264 4390352 ~ 4418766 (+)
fgd5a LOC108255103,LOC108435806 coding upstream 300371 4334165 ~ 4380659 (+)
fezf2 fezf2 coding upstream 388662 4289572 ~ 4292368 (+)
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding downstream 11608 4695159 ~ 4740849 (+)
cse1l cse1l,LOC107750990,LOC107699361 coding downstream 790339 5473890 ~ 5486512 (+)
LOC113539749 NA coding downstream 823442 5506993 ~ 5510940 (+)
LOC113539468 NA coding downstream 831157 5514708 ~ 5517420 (+)
bmp7a bmp7,LOC108435091 coding downstream 836571 5520122 ~ 5544024 (+)
G301923 NA non-coding upstream 385514 4295308 ~ 4295516 (+)
G301921 NA non-coding upstream 386297 4294467 ~ 4294733 (+)
G301881 NA non-coding upstream 470769 4132280 ~ 4210261 (+)
G302281 NA non-coding downstream 48602 4732153 ~ 4733061 (+)
G302360 NA non-coding downstream 137141 4820692 ~ 4820899 (+)
LOC117599916 NA non-coding downstream 153601 4837152 ~ 4878375 (+)
G302530 NA non-coding downstream 492019 5175570 ~ 5217425 (+)
G302575 NA non-coding downstream 838983 5522534 ~ 5565014 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 211834 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 402357 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 767944 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 1957449 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 2492113 2141522 ~ 2188917 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 527093 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 1516895 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 1814509 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1980417 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 3291040 7974591 ~ 8026929 (+)

Expression


Co-expression Network