LOC113539617 (tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833)


Basic Information

Item Value
gene id LOC113539617
gene name tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6318875 ~ 6334112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935518.2
ATGCATGGAGAGCTTTTGCCCTTTTGCGTGTCTCTCCATGCGCGCTGCTGACGTCATCGTGGGAGTGTCTCAACGGCAGGAATGAAATGAACGGTCATCGGCGCAATCCTCTCAGGACTCACCATGTAATATCGCCAGGTTTGCCAGGCTAGTCGACAGGAACAAGAAAAACTACTCCGTCCCATCTGGATCGAGTGGCAGTTATCGTCTATGACCTGAAGAGATTATTTTGGATTACCCCGTAGGATTAATTCACACCATCTTTCTAAATGGAGACGACAGAGCGGGCGAACTGATGAATGGGACGAGCCATTCCTGAATTGAGAGCCAGAGGAGGCCGGGCTGGTCTGATGACAAGCATGACTTTGAGCCAATCCACAGATGCATGCACGCTCACAGAACCCACCCGAGTGCCAAGCCCCCTGCTACCTGGCTTTTGAATCTGCCTGTCAGAGGGTTAGTGGTGGCGGGGCTTAGTTAGACCCTGACCCGATGCCGACCCTCTAAGTTGAACCTGGCAGCCTTGAGATGGATCAGGGTGCTAGCGAACAACCTGCCACGGAGGAGCCAGACTCCGGGACTCGAGCTGAGTCGGGGGCGAGCAGGAGGGCTTCTGAGGCCGAGCACAGCTTGTCCAAAATTACTCAAAATGCCCTGGAGAACATGGGCGTGCTTGGCCATGGCCTGAAACAGCTCTTCCAACCCCAGCGCCGGCGCTCATCTGTCGTGCCACAAgacctctcctcttcctctgcgAGCCCTGCACCTGAGGCCGCAGAGGCAGGGTCAGAGTTGGGAGAAGCCACTGCCCCTAACATCACGCCTCCTGACTCTGACCTCCCATCCACTTCCACCCCCCCCGCAGCTCTGAGCCGTGTGCTGCAGCAGATCCGAGGTGCTCCCCCCATGATGAAGCGAGGGACCAGCCTGCAGAGTCGCCGCAGCAAGACTGGGGGGGGAGGGGAGCCCCCCCAGAAAGGCAGCCCCCAGATCCATCGGCGCAGTACCCAGGAGGCTTTGATGCAGGCTGGACGCCCGCGGTCGTCCTCCACCACGGACACTCCCAGCAGCCCTGCCTTGGCCGACATGCTCCTGACCTCCGGCTATCACTCCACCGAGGAATCAGACCGAGTGGATCGCCTAGAGGTGTCTGGCTTGGCTGCATCCCCCAACGCTCTGTCCAGCAGCTCAGATGGCGGTGGTGCTTACGGTGTAGACTCGGTAGACGGCGCTCCTGACCCGCAGCGCACCAAACAAGCCATTTCTCAGCTGCAGCAGAAGATCCTCAAGCTCACGGAGCAGATCAAGATCGAGCAGACGGCGCGCGACGACAACGTAGCCGAGTACCTGAAACTGGCCAACAACGCTGACAAGCAGCAGAGCGCACGCATCAAGCAAGTATTTGAGAAGAAGAATCAGAAGTCAGCACAGACCATCCAGCAGCTGCAGAGGAAGCTGGAGCATTACCACCGCAAGCTGAGGGAGGTGGAGCACAACGGCATCCCGCGCCAGCCCAAAGACGTGCTACGTGACATGCACCAGGGCCTGAAGGACGTCGGCGCCAAGGTGACCGGAGGTCTCTCCAGTATCTCCCAGGCCACTCATTCAGCTGCAGGCGTTGTTGTTTCCAAACCCCGTGAGTTTGCCTCGCTCATCCGCAACAAATTCGGGAGTGCAGACAACATCTCGTCGCTAAAAGACTCTCTGGACGAGACGCAGGGGGACGAAGCTGTGCCAGGGGTTGTACCAGGGGCCGGGACGTCATCCACTAGAGCCCTAGCACCTGGACAGTTGCAGTCCAGCCCCAAGTACGGCAGCGAGGACGACTGCTCGAGCGCCACGTCAGGCTCGGCAGGGGCCAACAGCACCACTGGAGCCCCTGGAGGACCCCCAAGCTCCAAGGGCAACACGCTGGAGCACGGCCAGGCCTCAGGCCTTGACGCTCTGTTTCACGAGATCCAGGAGTTGCGGGAGAACCAGGGCCGGCTGGAGGAGTCGTTTGAGAATCTGAAGAGCCTCTATCAGAGGGATTACACGGTTATCATGCAAGCCCTGCAGGAGGAGAGATACAGATGTGAACGTCTAGAGGAGCAGCTGAATGATCTCACAGAGCTCCATCAGAATGAAATTCTCAACCTGAAGCAGGAGCTGGCCAGCATGGAGGAAAAAATCGCATACCAGTCTTACGAACGGGCCAGAGACATACAGGAGGCGCTGGAGGCCTGCCAGACGCGCATCTCGAAGATGGAactacagcagcagcaacagcaggtGGTGCAGTTGGAGGGGTTGGAGAACGCCACGGCACGCACCCTGCTCGGCAAGCTCATCAACGTTCTGCTGGCCGTCATGGCTGTCCTGCTGGTGTTCGTGTCGACGGTGGCGAACTGTGTGGTCCCGCTTATGAAGACACGCAGCCGCACGCTTTCCACGCTGCTCCTCGTCGTCGTCCTGGCCTTCCTCTGGAGGAACTGGGAGGCCATTTCACAGTACCTGGACCGTTTCTTGCTGCACTCTAGATGACCTGCACGGAAAGTGATATCGGCTTTATGAAGGGAAAGAAAGGACGGGGCCTGACGAAGGACCCGGAGACAAGCGCACTGCCTCAGCCGCTGTGAGCTCCAGATGAAGGAGCTCGGTGAGGATGGATGTCAAGAGAGATCTCACAGATGATTTTGATGCTTTGTTCCTTGCCCAAGGAGtgaatttgtttacattttgatgaagatatttttttttctgtctactggaaaaaaattgtaatgcagagttgttgtttttttttttttttggtgttgaaAGTGATGCAAGTTGTGTTGCTTTGTGTCCTTGTATAATTATAGTAAGAGTATAAAATTTATGCAAATAACCAGGATCTGGTTTTGCGGCACTGAATTAACACTGGAGTGTGTCGAGTGCAAACAGGATAACGTTCTCTTCATCAGCATAGCcttcatcactatcatcactcAGCTTGTTTCCCTTTCTAAACCACACAGTCTGTTTTTACTCTCTTTCTTCACcacaatttcctctctctctctctctctctctctctctctctctctatctgtctcacacTATGcacatctgtctttctctaaaTCTCTCTTTGCCCTGCTGTGCTGTGTCCTATTCCTCTACATCCTTCTTATGACCCTTTGCTGCTGAAAGGACTTCCGCACAATCATCACTGGAAGAAATGGGTTCAGCTTGTGCAGATGAGTTTTGTGTTTGATTAGCTGGGCTGTACTGGACTGGGCCACAGAATAAGAAAGTTCTTGGCTTATCAAAGACCCAGGCTGCCCTGCCTTTGCTTCTCTAGCCCTGCCCATTGTGCCCCCTGCTGGCCTGCTCTGATAGAGGCACTGCCTCCAACCCATAAACAGAATGAACATACTTGAAGAGCTAGAAAGGCTCAAAGACTATCAGTGCTTCCGTACTGTTTCTTATAGCGACGATGAAATAGtcctttttagtttttattttttaaaattaaatgaataaacggGCTGTTTTAAAAGTGAA

Function

symbol description
tmcc1b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC1 (transmembrane and coiled-coil domain family 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935518.2 True 3528 mRNA 0.54 9 6318875 6334112

Neighbor

gene id symbol gene type direction distance location
LOC113539691 NA coding upstream 5405 6310692 ~ 6313470 (+)
LOC113539620 NA coding upstream 10179 6305677 ~ 6308696 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding upstream 120492 6160790 ~ 6198383 (+)
LOC113539546 NA coding upstream 214816 6099010 ~ 6104059 (+)
LOC113539543 NA coding upstream 228838 6084440 ~ 6090037 (+)
dnajc16l LOC108255153,LOC108436218 coding downstream 1572 6335684 ~ 6345255 (+)
LOC113539438 LOC108281051 coding downstream 23340 6357452 ~ 6363685 (+)
si:dkey-33m11.6 NA coding downstream 31944 6366056 ~ 6368120 (+)
ddx19 ddx19,LOC108255077,LOC107680447,LOC108411521,LOC107699345,LOC107572851,LOC107556002,LOC107714482 coding downstream 42323 6376435 ~ 6384403 (+)
acap3b acap3b,LOC108254862,LOC107714502,LOC107680440 coding downstream 72658 6406770 ~ 6464866 (+)
G302585 NA non-coding upstream 737896 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 753861 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 757351 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 1101450 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 1440500 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 16080 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 301745 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 457206 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 533606 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 564378 6898490 ~ 6900530 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 25126 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 847314 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1849679 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 2040202 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2405789 3850561 ~ 3913086 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 163948 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 329856 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1640479 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2146983 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 3202013 9536125 ~ 9551761 (+)

Expression


Co-expression Network