bysl (bysl)


Basic Information

Item Value
gene id bysl
gene name bysl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 542037 ~ 547617 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935566.2
agagagagagagaggcgatCTGCGCATGCGCCTGCGCCATTTGCTCCGAAGTAGAAacccacgtgtgtgtgttcagacagtgtgtgtgctgcgtgtgtgtttggggatCATTaggaagctgaagctgaagctgtgGACGGTGAGGTTTAGCGGTGATGCCGAAGGTGAAGCGGGGTAAAGCGGAGCGGGCCCGGGGCCCAGGCCCTGTCTCAGGccctgtctctgtccctctggCGGATCAGATCCTGCAGGGAGAAGCAGCTCTCCGctccacacacagagagaagaagcGCAGAGATGAAGCTCAGGAGGAGGACGAGTATGTGGATGAGAAACTGTCCCGCAAAATCCTGCAGCAGGCCCGCATTCAGCAGGAGGAGCTGCAGGGGGAGTACGGCCTACAGAGTCCCCATGtggacatgaagaagaagaaaaaccaGCCTTCTGCACTGCTggCAGGTCCGAGCAGTAAGGATGCCGAGTCGGATGAGGAATGGCCTGAGCTCGGAGTGGAGGAGGTAGAAGGTGGCACAGAGGTGGAGGTCGATGCGGAGGATGAAAAGGCCATCCAGATGTTCATGAACAAGAATCCACCTGTCAGgcgTACTTTAGCTGACATCATCATGGAGAAGATCACAGAGAAGCAGACGGAGGTGGGCACGGTGATGTCGGAGGTTTCGGGGCAGCCCATGCCTCAGCTCGACCCCCGCGTTATAGAGGTGTACAGAGGAGTCAGTAAGGTTCTGTGTAAGTACCGCAGTGGGAAACTGCCCAAAGCATTTAAGATCATCCCGGCACTGTCCAACTGGGAGCAGGTCCTCTACCTCACCGAGCCCGAGACGTGGAGCGCAGCAGCGATGTACCAGGCCACACgGATTTTTGCGTCAAACCTGAAGGAGCGAATGGCTCAGCGCTTCTATAACCTCGTACTGCTGCCGCGGATCAGAGATGACATCGCCGAGTACAAGAGGCTGAACTTCCACCTGTACAGCGCTCTGAAGAAAGCTCTGTTTAAACCCGGGGCCTGGTTTAAAGGAATCCTGATCCCGCTGTGTGAGTCAGGAACCTGCACTCTGAGGGAGGCCATCATCATCGGCAGCATCCTCACCAAGTGCTCTATCCCTGTACTGCactccagCGCCGCCATGCTGAAACTGGCTGAAATGGAGTACAACGGAGCAAACAGCATCTTCCTTCGCCTGCTACTGGATAAGAAGTACGCGCTGCCATTCCGTGTGCTGGACGCGCTGGTCGCTCACTTCCTGTCGTTCCGGACAGAGCAGCGCGTTCTTCCTGTGCTGTGGCATCAGAGTCTGCTCACACTGGTGCAGCGCTACAAGGCCGACTTGGCCTCCGAGCAGAAGGGGGCGCTGCTGGAGCTGCTGAAGATCCAAACGCATGCACAGATATCAGCCGAAATCAGGCGCGAGCTTCAGAACGCAGAGGCACGAGACCAGGAGGACGCAACACCTGCCATGACAATGGACTGAAAAACACAGGACTCTCAAATTAagactttataaataattagcTTCTCACCCTGCTGGAGAGTTTAAAGGTACACTAAGCACAAATTCCCATTACTGCCAGGTAACATATTAATAAACctatttattacagtgtaatgtCAGTGAAAGGTTAAAGATTGTAATGGAAAAGGAAAAGTCACATTCAGGGCAGAAAAAGAAGCGTGTCTATTTTCACACACAGGTGAAACATTGCTTAGTGTACCTTTAATTCAGCAGTTTTCTGGAATATCTTTATCATCAAGTCAAATGTAAAGGAAACACTTCCTTCACTAAAAGTGTTTGGCCACCAGTTAATGTCGCAGTGCTTTTATTAAGCTGCTGGCTAATcgctaaaataaacacacacggCCTGCATGGACAGTAATGTCAAACTGAGAAGTGTCCTTGAAAGTTCAAGCTGAGGCcagataatatacagtatacacttcATCTGTGACTCtcaaatttgtaataaatatggACTATATAAACTGA
>XM_026935567.2
agagagagagagaggcgatCTGCGCATGCGCCTGCGCCATTTGCTCCGAAGTAGAAacccacgtgtgtgtgttcagacagtgtgtgtgctgcgtgtgtgtttggggatCATTaggaagctgaagctgaagctgtgGACGGTGAGGTTTAGCGGTGATGCCGAAGGTGAAGCGGGGTAAAGCGGAGCGGGCCCGGGGCCCAGGCCCTGTCTCAGGccctgtctctgtccctctggCGGATCAGATCCTGCAGGGAGAAGCAGCTCTCCGctccacacacagagagaagaagcGCAGAGATGAAGCTCAGGAGGAGGACGAGTATGTGGATGAGAAACTGTCCCGCAAAATCCTGCAGCAGGCCCGCATTCAGCAGGAGGAGCTGCAGGGGGAGTACGGCCTACAGAGTCCCCATGtggacatgaagaagaagaaaaaccaGCCTTCTGCACTGCTggGTCCGAGCAGTAAGGATGCCGAGTCGGATGAGGAATGGCCTGAGCTCGGAGTGGAGGAGGTAGAAGGTGGCACAGAGGTGGAGGTCGATGCGGAGGATGAAAAGGCCATCCAGATGTTCATGAACAAGAATCCACCTGTCAGgcgTACTTTAGCTGACATCATCATGGAGAAGATCACAGAGAAGCAGACGGAGGTGGGCACGGTGATGTCGGAGGTTTCGGGGCAGCCCATGCCTCAGCTCGACCCCCGCGTTATAGAGGTGTACAGAGGAGTCAGTAAGGTTCTGTGTAAGTACCGCAGTGGGAAACTGCCCAAAGCATTTAAGATCATCCCGGCACTGTCCAACTGGGAGCAGGTCCTCTACCTCACCGAGCCCGAGACGTGGAGCGCAGCAGCGATGTACCAGGCCACACgGATTTTTGCGTCAAACCTGAAGGAGCGAATGGCTCAGCGCTTCTATAACCTCGTACTGCTGCCGCGGATCAGAGATGACATCGCCGAGTACAAGAGGCTGAACTTCCACCTGTACAGCGCTCTGAAGAAAGCTCTGTTTAAACCCGGGGCCTGGTTTAAAGGAATCCTGATCCCGCTGTGTGAGTCAGGAACCTGCACTCTGAGGGAGGCCATCATCATCGGCAGCATCCTCACCAAGTGCTCTATCCCTGTACTGCactccagCGCCGCCATGCTGAAACTGGCTGAAATGGAGTACAACGGAGCAAACAGCATCTTCCTTCGCCTGCTACTGGATAAGAAGTACGCGCTGCCATTCCGTGTGCTGGACGCGCTGGTCGCTCACTTCCTGTCGTTCCGGACAGAGCAGCGCGTTCTTCCTGTGCTGTGGCATCAGAGTCTGCTCACACTGGTGCAGCGCTACAAGGCCGACTTGGCCTCCGAGCAGAAGGGGGCGCTGCTGGAGCTGCTGAAGATCCAAACGCATGCACAGATATCAGCCGAAATCAGGCGCGAGCTTCAGAACGCAGAGGCACGAGACCAGGAGGACGCAACACCTGCCATGACAATGGACTGAAAAACACAGGACTCTCAAATTAagactttataaataattagcTTCTCACCCTGCTGGAGAGTTTAAAGGTACACTAAGCACAAATTCCCATTACTGCCAGGTAACATATTAATAAACctatttattacagtgtaatgtCAGTGAAAGGTTAAAGATTGTAATGGAAAAGGAAAAGTCACATTCAGGGCAGAAAAAGAAGCGTGTCTATTTTCACACACAGGTGAAACATTGCTTAGTGTACCTTTAATTCAGCAGTTTTCTGGAATATCTTTATCATCAAGTCAAATGTAAAGGAAACACTTCCTTCACTAAAAGTGTTTGGCCACCAGTTAATGTCGCAGTGCTTTTATTAAGCTGCTGGCTAATcgctaaaataaacacacacggCCTGCATGGACAGTAATGTCAAACTGAGAAGTGTCCTTGAAAGTTCAAGCTGAGGCcagataatatacagtatacacttcATCTGTGACTCtcaaatttgtaataaatatggACTATATAAACTGA

Function

symbol description
bysl Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytoplasm and nucleolus. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human BYSL (bystin like).

NR:

description
bystin isoform X1

GO: NA

KEGG:

id description
K14797 ENP1, BYSL; essential nuclear protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935566.2 True 2003 mRNA 0.51 7 542037 547617
XM_026935567.2 False 2000 mRNA 0.51 7 542037 547617

Neighbor

gene id symbol gene type direction distance location
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding upstream 11559 522376 ~ 530478 (+)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding upstream 33684 503469 ~ 508353 (+)
apobec2a LOC108281085 coding upstream 46400 492045 ~ 495637 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding upstream 102860 431512 ~ 439177 (+)
btg2 LOC108255010 coding upstream 132587 406108 ~ 409450 (+)
ccnd3 ccnd3 coding downstream 1216 548833 ~ 554712 (+)
dstyk dstyk coding downstream 23971 571588 ~ 607621 (+)
nbl1 nbl1,LOC105897883 coding downstream 140334 687951 ~ 696115 (+)
LOC113539512 LOC108281094 coding downstream 151409 699026 ~ 703360 (+)
LOC113539444 vwa1 coding downstream 177923 725540 ~ 740352 (+)
G299528 NA non-coding upstream 287805 251723 ~ 254232 (+)
G299522 NA non-coding upstream 305547 236076 ~ 236490 (+)
G299482 NA non-coding upstream 324628 209994 ~ 217409 (+)
G299486 NA non-coding upstream 337125 203812 ~ 204912 (+)
G299503 NA non-coding upstream 363372 173753 ~ 178665 (+)
G299618 NA non-coding downstream 17659 565276 ~ 565508 (+)
G299625 NA non-coding downstream 53941 601558 ~ 602113 (+)
G299679 NA non-coding downstream 260542 808159 ~ 809350 (+)
G299708 NA non-coding downstream 290746 838363 ~ 838915 (+)
G299695 NA non-coding downstream 297851 845468 ~ 847722 (+)
cdkn1a cdkn1a other upstream 21094 515540 ~ 520943 (+)
dram2b NA other upstream 181779 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 352720 165615 ~ 189317 (+)
LOC117599902 NA other downstream 131300 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 210892 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 295236 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 315641 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 900825 1448442 ~ 1494645 (+)

Expression


Co-expression Network