ldlrad2 (ldlrad2)


Basic Information

Item Value
gene id ldlrad2
gene name ldlrad2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2754776 ~ 2761167 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935604.2
GccctgttgccatggaaacggCGCAGACGCGTGGAAGTGACGAAGAGGCATCAAAAGTGGCGATGATGAAGCAGGAACCACTCCTGATGCAAAAACTCCTCCAGCTTTAGGACTTAATAACAGGCGCTTATAACAGCCACATGAGCGGATCGCGCATCATGGGGATCACAGCTTTAACTTTCTAATCTGGTGAAATGTTACAATGACGTTGGCGGATCTATAACGCTAGAGAAACTtggaggaaaggaaaaaaaaaaaagaaacactccAGACTTGTGACTCCTCATGGCCAGACTTGGGTTTACATGGTTTGTTCTTCTGAGTATAATGCCACTGCAAACTGATGCCATAGAGACAGTGAACGTGGTGGATTTCTGTGGCCAGACAGTACGGGGGGATGGCATGATCGTCCGGTCCCACCAGGAGTCGCGCAGGTACTACTTTGTCAGCATGGGCACCGACTGCCACCTGACCGTGCAGGCAGCCACGCCCCGCGACAAGGTGCAGTTCCAGTTCCGCTTCTTCCTGGTTTACAGCCTGCTGCGTGTGTCACCCTTCAGCCCCGTCCCCTTCGTCCCAGAGTCGGCCCGGGGTCCCTCGCATTCGGGTTCCACACGGCCTGACCAGCGCATGGAGCCTACGCCGGATGAGGGCCAAGGAGACCCGTGTCACGCTGGTTCTTACATCCAGTTCTATGATGGGCGGGATAAGATGGCGCCCCCTATCGGGCCTCCACTTTGTGGAAAGAGCCTGCCACGCCCAGTCCTGTCCACTGGAAACTATCTGACTCTGCGACTGGTGACCAGGGGGACTCAACCACGTGTGGATTTTGTTGGGGACTTCACCTCATTCAGACTGGGGTTTAATCAATCTGAATGCAGCAGTGAGCCTTATTTCACCTGCCAAAATGGAAAATGCATCCCAATGAGTCTGGTGTGCAACGACGACAAGGGAATCGACAACTGTGGAGATGGCACCGACCTGCAAGATTACCCAGGATGCAACAGTCTGTTGTCCACAGCTAGCACACGTCAGCCGTATGTAACTCCTCCGCCCATGTCGAATGTGGCCACCATGAGGGCATCGACTCTGGAGAAGTGCAGTGGCTCAAACCTCATCCCCGACATTGATTCTGTCACTGATTCTCCTCCGTACGTGTCTCTGCTGGCGCTCTACGTGGTTCTTGGAGTTCTGGCCGGCTCAGTGGTCGTGTGCTGGTGCTGCTGGTCTCCCGGCTGGTTCCTCTGGAGAGTGAGTGTGTTTCGTTTCCTGCCGTGCTGTAACTCCTGCTGTGCCTCGTGTCAGCTGTGCAGCCGGAGCTGCTTGCAGAACAAAGAACACCGGCTGGCCAAGGTCACACCGCAGCAATCCTCCACGCCCGCAGCCTCCACCACCACCGTGGCCGTGTAGAGTCTGCACAGGAGGACTCGCTCTGAAAGTGtctgatggagtgatggagaagGACACTGTGGTGGTAACGTGTTCATCATGACGCGTGCTCAAAGACGTGCGTTTGTGGTTTGGAACTGGggcaaatattttgttttctgtctgCTGCTTTTATATGAAATTGTGTTATCGTGTTTTTATGTCTTAAAAATTTGTGCAGTTCAGTTTCGTGTATCGCTCACTGGATATACAGAAGAAGATGACGTCAGTATTATCACAGCGATCCCAGGCACTCTGTGCTCATTTATAACCAGAAAATGGACCTAAAAGAGGTATTCACATTTCCCAAAAGGACCATGCACAAAAGGTGTTCAAGTCCGGACCGATTCTGTTTTCAAAACGACAGTCCAAACAGTTTCACTATTCCCAGAGCTATTGTTGAAGATGCTTACATAACAGCTATGAGTGTCTCGGTGTCAGTTTGGCACGTTGCTCTGTCGTGATGAGGTGCATTTTTCCTCACGGCTGTTGCTCAGTTACTGAGCTCTGTCCTGTTCACCCAGAGGTCATGTCCTGAAGCGTGCACTCTGCTCTTATACGGCTCTGTAATGGAGCCCCACCACacaacagcacaaacactgctcACTTACAGCTCAGTATCATTTTACATTAGTCCTGCTTTGGGTTTAGTCTCAGTTTGGGTTTACTCTCGTTCTGGGTTTAGTTTGAGTTTGAGGTAGGTCTCATTTTGGGTTTAGTCTCATGTTGGGTTAAGAATCACTTTGGGGTTCAGTCTCAGCTTGAGTTTAATCTCAGTTTCTTCTTAGTCACACGTCTGTGCCCAGTCTGGTTTGGGCTTAGTCTCAGTTTGTGTTTCGTCTCATTTTGAGTTTAGTCTCATTTTGAGTTTAATCTCGGTTTGGGCTAGTCTCAGTTTGAATCTAGTCTCAGCTTGTGTTTAGTCCTGGTATGGACACAGTCTCAGTTTTGGTTCAGTCTCAGTTTGGGTTTTATTCTTACTTTGGGTTTAGACTTGTTTTGGGTCTAGTCTCAGTTTGGGTTCAGTTATGGGTTAGTTTTAGTTTGAGGGACAGCTGGGAAAGGCAACATTGCTGACTTTGTTACACTGATGAGCAAAAACTGAGACTAAACTCAAACCGAAACTAAGATCACTGATACTAAACCCAAATCAACACTAAGCCAAATTTAAACTAAACCCCTGTTCAGACTAAAGCCTGTTTTATGCTACGTTCTGTGTTTAGTAAAGCCACTCTCTGAAACAAGAACCGCCCACCTTGCAGTGATTGGTCAATAGTGACATATGGAGTGTGAATAGAAACAGGCTGGAAATTTTCGTCTTTGCTTTTATTTCGAGCGTCTCTCAGAAGCTCTTCTGATCATTTGTAATCTAAACTTTATACCAAATTGAAAACTAAACGTAGCTGAAACTGGGCTTAGTCTTGGTTTGGGCGTGTTCAGTATCACATTTCCCTCGGGGTCTCTGTTCTGCACGTGTTGATGCACTGTTGAAGGGGTTTGGGTCAGATTGGAAAAATAATGGTACATAATATTTCTAAGAGAGATATTTCTAAGACTGATCAAATATTATACCAAAAACTGTGTTAGTCTCTAgctatatgtctatatatatatttttaagtatttttctTCTTGTGGATTTATGGTATTTTCCAAGTAGATAGTTTGATATGAGTGTAGATAccactgtctctgtttttttatgcttgattaaaatttgaatgtaaatacagatataATGTATGATTTATGCTTTTCATACGAAC

Function

symbol description
ldlrad2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD2 (low density lipoprotein receptor class A domain containing 2).

NR:

description
low-density lipoprotein receptor class A domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935604.2 True 3194 mRNA 0.47 5 2754776 2761167

Neighbor

gene id symbol gene type direction distance location
atxn7l2a atxn7l2,LOC106565127 coding upstream 40625 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 57809 2684049 ~ 2696967 (+)
zgc:172270 LOC108281023 coding upstream 113453 2635314 ~ 2641323 (+)
si:ch211-213o11.11 LOC108281028 coding upstream 125055 2621512 ~ 2629721 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding upstream 146841 2578374 ~ 2607935 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding downstream 2495 2763662 ~ 2766405 (+)
dnah1 dnah1 coding downstream 25718 2786885 ~ 2827062 (+)
mapkapk3 mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890 coding downstream 66721 2827888 ~ 2852258 (+)
pfkfb4a pfkfb4,LOC108254777,LOC108435436,LOC107715804,LOC107574463,LOC107551799,LOC107718206,LOC107677511 coding downstream 84207 2845374 ~ 2881640 (+)
tada3l tada3,tada3l,LOC107656064 coding downstream 125557 2886724 ~ 2893259 (+)
G300843 NA non-coding upstream 17868 2736478 ~ 2736908 (+)
G300842 zbtb40 non-coding upstream 18769 2735036 ~ 2736007 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding upstream 25169 2728484 ~ 2729607 (+)
G300840 NA non-coding upstream 27265 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 28184 2726264 ~ 2726592 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 145541 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 267773 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 691504 3452671 ~ 3453505 (+)
G301506 NA non-coding downstream 760625 3521792 ~ 3530359 (+)
G301792 NA non-coding downstream 1157163 3918330 ~ 3918531 (+)
LOC113539549 LOC108254930 other upstream 31195 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 565859 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 694135 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1255604 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1260131 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 1089394 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1397065 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1689873 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2449477 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3439279 6200446 ~ 6293749 (+)

Expression


Co-expression Network