fam72a (fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849)


Basic Information

Item Value
gene id fam72a
gene name fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC105017400,LOC107548849
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 7213709 ~ 7218371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935651.2
gGAAGTGCATGTTTGTTGAAAGGTTTGTTTAGATAGCTTAGCCTTTTTCACTGTATGGTACTACCGCAGTTCATTCTCTTATTATATCAGCGATTTAAGTGTAGATTTAATTTATGCAAAATCgtctgggtttaaaaaaaaaaGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG
>XM_026935652.2
gGAAGTGCATGTTTGTTGAAAGGTTTGTTTAGATAGCTTAGCCTTTTTCACTGTATGGTACTACCGCAGTTCATTCTCTTATTATATCAGCGATTTAAGTGTAGATTTAATTTATGCAAAATCgtctgggtttaaaaaaaaaagtaagcatCCATTATGTTTAGTCAATGTGAATGCTATTGCACTAGCGAGTTTGCTTTGTTATTTTTAACAGACAGGTGTAGCTAGCAGGACAACTTTGTGTTGTAATGtataaatgtgacattttagTTTTGTAGACCTATCTGACTAGTTGTCTGGAAAGCTTTCGGCGAGATACATCTTAATTCATTTAATGTTAGAGCGCTAAATTTAGAACGAAAGCTAGTTAAGTAACTAACGTTAGCTAACTTCCGGTTTCAATTAAATAGCCCGCAAGCAGGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG
>XM_026935653.2
GCCTATGAGCCgttttgaaaatgtttcagGAAGTGCATGTTTGTTGAAAGGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG
>XM_034314009.1
gGAAGTGCATGTTTGTTGAAAGGTTTGTTTAGATAGCTTAGCCTTTTTCACTGTATGGTACTACCGCAGTTCATTCTCTTATTATATCAGCGATTTAAGTGTAGATTTAATTTATGCAAAATCgtctgggtttaaaaaaaaaaGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGCTTCATCCCAGGGAGGAAAGCAAGGAAAGGAAACGATGAGGCGCAGtataagaaatgagaagcaccCATAGTCTTGGGTTCGTCCCAGACTGCATACTGCCACACTAAACAGTAAGCCAAAATAGTATGCAAGAAGAGTGTGTGGTACAACTGCTGTTCGGCAGCACAGAGATGTCTTATATTCATTGTTTCTCCtatgcaaatttaaaatttgcataaaacCACGTGGATGGAAAGTCTGTTATATTCAGTAATGCAAGCGCAAggatgcatgtgtgtttgcgtCTGGTAGCGGTTGCTTACGTTTTGCCCCAGTTTTATCACAGTGAAATTTCACCTGTGTATTCACAAGCTTCAGTCTTGTGAGCAAATAGAAAGCAGATAGGCAGGACTTcgtttggttaaaaaaa
>XM_034314010.1
gGAAGTGCATGTTTGTTGAAAGGTTTGTTTAGATAGCTTAGCCTTTTTCACTGTATGGTACTACCGCAGTTCATTCTCTTATTATATCAGCGATTTAAGTGTAGATTTAATTTATGCAAAATCgtctgggtttaaaaaaaaaaGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGCTTCATCCCAGGGAGGAAAGCAAGGAAAGGAAACGATGAGGCGCAGtataagaaatgagaagcaccCATAGTCTTGGGTTCGTCCCAGACTGCATACTGCCACACTAAACAGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG
>XM_034314011.1
gGAAGTGCATGTTTGTTGAAAGGTTTGTTTAGATAGCTTAGCCTTTTTCACTGTATGGTACTACCGCAGTTCATTCTCTTATTATATCAGCGATTTAAGTGTAGATTTAATTTATGCAAAATCgtctgggtttaaaaaaaaaaGGTTTGTCTGATCGAGCTGCACGATGTCTACGTCGAATTTTAAGAATAAGTGTGTTGCACAAGTGAACTGTATTTACTGCGACAGTCTTCTGTGCACGAGAGGCATGAAAGCTGTGCTGTTAGCAGATACAGAAATCGAGCTGTTCTCCACTGACATGCCTCCAAACAGGACTGTCGATTTCGTTGCAGGCTGCTATTCGACAGAAAGCTGTAAATGCAAATTAAGAGACATTGCCTGCCTGAAGTGTGGAAATGTTGTGGGGTATCATGTCGTGGCTCCGTGCAAACCCTGCCTGCTCTCCTGTAACAACGGCCACTTCTGGATGTTCAACAGCGAAGCTGTTTCCACCATCAACAGACTGGATGCAACAGGTTTGGAGTCTCTGTCAAAGGAGTGAATCTGCTGCTGTGGGGAGATCTACCAGAGCTTGAGGGAAGTGAGGATGAGAGCACAGACAGCCTTTCAGAAGAGGAATACCTCAGATAGAAGGCCATTGAGGTACCAAATCCCCCACCCCCCTCCACCCCCATTTCCTTTAATGAACTACTTGGGAGACTCAAGAGTCACGGTTTGAAGCACATCCTGTTGTCAGCTCGTGGGTCGGGGCGGGGCGG

Function

symbol description
zgc:101564 Predicted to be active in cytosol. Orthologous to several human genes including FAM72A (family with sequence similarity 72 member A).
fam72a Predicted to act upstream of or within negative regulation of brain-derived neurotrophic factor-activated receptor activity and positive regulation of apoptotic process. Located in cytosol and intracellular membrane-bounded organelle.

NR:

description
PREDICTED: protein FAM72A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935651.2 False 738 mRNA 0.47 5 7213737 7218371
XM_026935652.2 True 1016 mRNA 0.44 5 7213737 7218371
XM_026935653.2 False 645 mRNA 0.49 5 7213709 7218371
XM_034314009.1 False 925 mRNA 0.43 5 7213737 7217405
XM_034314010.1 False 849 mRNA 0.47 6 7213737 7218371
XM_034314011.1 False 758 mRNA 0.47 5 7213737 7218371

Neighbor

gene id symbol gene type direction distance location
il10 il10 coding upstream 260922 6949935 ~ 6952787 (+)
il19l LOC108281068 coding upstream 272945 6938018 ~ 6940764 (+)
prelp prelp coding upstream 280558 6925266 ~ 6933151 (+)
zgc:113307 LOC108281030 coding upstream 295724 6903339 ~ 6917985 (+)
LOC113539624 chia,LOC108255197,LOC108255198,LOC108435172 coding upstream 328187 6882388 ~ 6885522 (+)
foxp4 foxp4,LOC107728618 coding downstream 190464 7408835 ~ 7541196 (+)
mdfi mdfi,LOC106565692 coding downstream 331415 7549786 ~ 7593458 (+)
ppfia4 ppfia4 coding downstream 487857 7706228 ~ 7834194 (+)
si:ch211-86h15.1 LOC108255151 coding downstream 637473 7855844 ~ 7896743 (+)
csf1a LOC108280990 coding downstream 1032154 8250525 ~ 8260663 (+)
G303806 srgap2 non-coding upstream 108180 7101770 ~ 7105529 (+)
LOC113539683 NA non-coding upstream 212597 6994845 ~ 7001112 (+)
G303658 fmod non-coding upstream 313179 6898490 ~ 6900530 (+)
G303645 LOC108281052 non-coding upstream 342937 6867718 ~ 6870772 (+)
G303437 NA non-coding upstream 420483 6791318 ~ 6793226 (+)
G303889 NA non-coding downstream 197044 7415415 ~ 7420578 (+)
G303891 NA non-coding downstream 202335 7420706 ~ 7446186 (+)
G303892 NA non-coding downstream 219084 7437455 ~ 7448739 (+)
G303966 NA non-coding downstream 485845 7704216 ~ 7705243 (+)
G304193 NA non-coding downstream 684984 7903355 ~ 7903564 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 434351 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 711073 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 919960 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 1742148 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 2744513 4451040 ~ 4469196 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 756220 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 1262724 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 2317754 9536125 ~ 9551761 (+)
G305515 NA other downstream 3294300 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 3545903 10764274 ~ 10773442 (+)

Expression


Co-expression Network