ccnd3 (ccnd3)


Basic Information

Item Value
gene id ccnd3
gene name ccnd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 548833 ~ 554712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935655.2
CCTCTGAGGAAGGGTCAAAGGTTTTGTTTTAGTTATAAACCTGACACATTTTGGTTAATTCACTTTACGTCCAttaatgtgtatttgtgtataaaaTCCACTTCCGGTCACCATTTTGTTTGGATTATGTGAGGAGTAGAACGTGACAGAACTTTCTGTGGCGCGAGACCGCTAGCAAGTCGCGCGCTCGTGCGTTTCCGCGCGGGAAGCCTGGGCGCCATTTTGAAATTCCTCCGCCTGGAAGAAGACGGTATTTGGCGAATGGAGTTGATTTGTCGTGAAAATGAGCAGTTCTTGTCGGCCACTGAAGAGTCCTCAGAGTGCAGGCCGGTTCGCGCCGGCTGTGACCCGGTTCTGACCGGAGATAAGCGGGTTTGGAGAAACCTGACGAGTTTAGAGAAAAACCACGCCATTTCAGAGTCTTATTTCGGCACCATGCAGAGGGATGTGCAGCCTTATATGAGGAGAATTTTAACTGTTTGGATGTTGCAGGTGTGTGAGGAGCAGAGGTGCGAGGAGGAGGTGTTTCCGCTGGCAGTTCAGTACCTGGACAGGTACATGGCTCACTATCTCGTGGACACATCCAGTCTGCAGCTGCTCGGCACCGTCTGCATGTTCCTCGCCTCCAAACTCAGAGAGACGGTTCCTCTGAGCGCCGCAAAGCTCTGCGTCTACACCGACAACGCCGTCTCCGTTACACAGCTACTGcagtgggAGAGAGTGGTTGTGTCGAGGCTGGACTGGGATTTGGCCTCAGTGCTGCCCTCCGACTTCCTGGAGCCGCTACTGCAGGGCCTTCCCATAATTCCTCATGATCTCTCAGCCCTgcgtagacacacacactcatacatcgCTTTAGCTGctacagagttTACATTTTCAACGTATCGGCCCTCGGTTATCGCCTGTAGCTGTGCGGCTGCTGCAATTCAGCGTCTGAATCTGCTGGACGGCGCGCTGTCCTGCGACACACTCCTGCAGCTCATGGCTAACGTCTTAGACAGTGACCTGGTGTCTCTCTGTAACTGTTACGCCGCCTTGGAGGAGACTCTGAAGCTCACTCTGCCCCCAAACACACCCCTGTGCAGGTCTGGTTCACCTGTTCATGAGGTCAGCAACACACCTGTTAAGATCCAGGAGGTCAAACTGTCACCTCTGAGCTTTACAGAATCACCCCAGACGTCTCGTTAGCTCGCGCTCATTAGAATTACTACTTTAATTCACCATCAGTATGTCTGAATTTAAATGAATCCTGTTGACTAAACTGTAGCTTTTGTTTGTTACCTGTTCATATTTTCAATtaagttaaaatattaaaattattattttagcttattttttttaattgtagtaAATATTGAATGAATTTCTAATTATCTGATACTACAAACTGAATCTAAGATGCATAATTTAAGATTGAAATACACTTTAATATTCAAACATTAATTAGGACTTTAGTCAGTCATTTGGAATTTCACATGCAAGCTGCACTTCCACTAAATTATCGgattattattttctctgtctATCGTTTTCCTTCTCAAAATAAATTATCACGCTGTAGCACAATTAACTAAACTGCTAAGCTGCTTTTCAGTTTGAGAGTTCATAAAGCTTTTAGTTCACTAAACTGCACCTCTGTACACtgtgtaacgtgtgtgtttgtttaaaatgttagagtgtttgttgtctgtgtgtgtgttaatctgcAAGCGCGGCTCATTTCCTTCACATTCTGTATGTTTCTGCACAATGTTTGACTTTCCTATTTGACCTTTGCACGCTGGACCAACGCTGCTTTCAGAATGTCA
>XM_034314243.1
CTCCGCCTGGAAGAAGACGGTAAAGAACATACAGTTAGATTTAACCTGTTtatcataaattaaaaagtgtttgTTGGCAGTTAAACTAGCCTGCGCTGGCTGGGTGTTGTTTGGTATTTGGCGAATGGAGTTGATTTGTCGTGAAAATGAGCAGTTCTTGTCGGCCACTGAAGAGTCCTCAGAGTGCAGGCCGGTTCGCGCCGGCTGTGACCCGGTTCTGACCGGAGATAAGCGGGTTTGGAGAAACCTGACGAGTTTAGAGAAAAACCACGCCATTTCAGAGTCTTATTTCGGCACCATGCAGAGGGATGTGCAGCCTTATATGAGGAGAATTTTAACTGTTTGGATGTTGCAGGTGTGTGAGGAGCAGAGGTGCGAGGAGGAGGTGTTTCCGCTGGCAGTTCAGTACCTGGACAGGTACATGGCTCACTATCTCGTGGACACATCCAGTCTGCAGCTGCTCGGCACCGTCTGCATGTTCCTCGCCTCCAAACTCAGAGAGACGGTTCCTCTGAGCGCCGCAAAGCTCTGCGTCTACACCGACAACGCCGTCTCCGTTACACAGCTACTGcagtgggAGAGAGTGGTTGTGTCGAGGCTGGACTGGGATTTGGCCTCAGTGCTGCCCTCCGACTTCCTGGAGCCGCTACTGCAGGGCCTTCCCATAATTCCTCATGATCTCTCAGCCCTgcgtagacacacacactcatacatcgCTTTAGCTGctacagagttTACATTTTCAACGTATCGGCCCTCGGTTATCGCCTGTAGCTGTGCGGCTGCTGCAATTCAGCGTCTGAATCTGCTGGACGGCGCGCTGTCCTGCGACACACTCCTGCAGCTCATGGCTAACGTCTTAGACAGTGACCTGGTGTCTCTCTGTAACTGTTACGCCGCCTTGGAGGAGACTCTGAAGCTCACTCTGCCCCCAAACACACCCCTGTGCAGGTCTGGTTCACCTGTTCATGAGGTCAGCAACACACCTGTTAAGATCCAGGAGGTCAAACTGTCACCTCTGAGCTTTACAGAATCACCCCAGACGTCTCGTTAGCTCGCGCTCATTAGAATTACTACTTTAATTCACCATCAGTATGTCTGAATTTAAATGAATCCTGTTGACTAAACTGTAGCTTTTGTTTGTTACCTGTTCATATTTTCAATtaagttaaaatattaaaattattattttagcttattttttttaattgtagtaAATATTGAATGAATTTCTAATTATCTGATACTACAAACTGAATCTAAGATGCATAATTTAAGATTGAAATACACTTTAATATTCAAACATTAATTAGGACTTTAGTCAGTCATTTGGAATTTCACATGCAAGCTGCACTTCCACTAAATTATCGgattattattttctctgtctATCGTTTTCCTTCTCAAAATAAATTATCACGCTGTAGCACAATTAACTAAACTGCTAAGCTGCTTTTCAGTTTGAGAGTTCATAAAGCTTTTAGTTCACTAAACTGCACCTCTGTACACtgtgtaacgtgtgtgtttgtttaaaatgttagagtgtttgttgtctgtgtgtgtgttaatctgcAAGCGCGGCTCATTTCCTTCACATTCTGTATGTTTCTGCACAATGTTTGACTTTCCTATTTGACCTTTGCACGCTGGACCAACGCTGCTTTCAGAATGTCA

Function

symbol description
ccnd3 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition; positive regulation of G1/S transition of mitotic cell cycle; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CCND3 (cyclin D3).

NR:

description
G1/S-specific cyclin-D2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935655.2 True 1811 mRNA 0.45 6 548833 554712
XM_034314243.1 False 1674 mRNA 0.45 6 549064 554712

Neighbor

gene id symbol gene type direction distance location
bysl bysl coding upstream 1216 542037 ~ 547617 (+)
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding upstream 18355 522376 ~ 530478 (+)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding upstream 40480 503469 ~ 508353 (+)
apobec2a LOC108281085 coding upstream 53196 492045 ~ 495637 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding upstream 109656 431512 ~ 439177 (+)
dstyk dstyk coding downstream 16876 571588 ~ 607621 (+)
nbl1 nbl1,LOC105897883 coding downstream 133239 687951 ~ 696115 (+)
LOC113539512 LOC108281094 coding downstream 144314 699026 ~ 703360 (+)
LOC113539444 vwa1 coding downstream 170828 725540 ~ 740352 (+)
fndc10 fndc10 coding downstream 193937 748649 ~ 752616 (+)
G299528 NA non-coding upstream 294601 251723 ~ 254232 (+)
G299522 NA non-coding upstream 312343 236076 ~ 236490 (+)
G299482 NA non-coding upstream 331424 209994 ~ 217409 (+)
G299486 NA non-coding upstream 343921 203812 ~ 204912 (+)
G299503 NA non-coding upstream 370168 173753 ~ 178665 (+)
G299618 NA non-coding downstream 10564 565276 ~ 565508 (+)
G299625 NA non-coding downstream 46846 601558 ~ 602113 (+)
G299679 NA non-coding downstream 253447 808159 ~ 809350 (+)
G299708 NA non-coding downstream 283651 838363 ~ 838915 (+)
G299695 NA non-coding downstream 290756 845468 ~ 847722 (+)
cdkn1a cdkn1a other upstream 27890 515540 ~ 520943 (+)
dram2b NA other upstream 188575 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 359516 165615 ~ 189317 (+)
LOC117599902 NA other downstream 124205 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 203797 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 288141 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 308546 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 893730 1448442 ~ 1494645 (+)

Expression


Co-expression Network