pnp4a (pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547)


Basic Information

Item Value
gene id pnp4a
gene name pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 8813581 ~ 8819844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935665.2
TTATCTTCATGCCTTACTCTCACTTTCACACGGACAATAACATGCACTGTAAAGATCAAATCAGTCACAAAGACTACCAGAGGACAGTGGATTGGCTCCTGTCCCAAACACAGCACAGACCTAAAGTGGCCATCATCTGTGGATCTGGACTGGGCATGCTGGCTGATGCCCTCCAGTGCCAGGACTCCTTCAAGTACTCTGATATTCCTGGCTTCCCACAAAGCACAGtgcAGGGCCATGTTGGGAGGCTGGTGTTTGGTGAACTCAAAGGGAAGACCTGTGTTTTTATGCAGGGCCGATTCCATATGTATGAGGGACACTCACTGTGTAAGGTCACTTTCCCGGTGAGAGTGTTCAAGCTTTTGGGTGTGGAAACCCTGATTGTCACGAATGCTGCAGGGTCCATAGCAGAAAGCTATCACTGTGGTGATGTCATGATCATTAGAGATCACATCAACTTCCCTGGACTTGCTGGTATAAACCCACTAAATGGCCCTAATGATGACAAGTTTGGACCTCGTTTCCCCCCTATGTCTGGAGTTTACGATAAAGATTTGAGAAAGCTGGCATTTGACATCTGTAAGAGCATGGGCATCACCCAATTTGTTCAGGAGGGAGTGTACTGTATGGTGGGTGGGCCCAACTTTGAGAGCATAGCAGAAGCCAGGCTTCTGCACAAACTCGGAGTGGATGCAGTGGGCATGAGCACAGCCCCTGAAGTCCTCGTGGCCAGCCATTGCGGCATGCGTGTGTTCGGCCTCTCACTTATCACTAATAAAGTGGTGAAGAGCTATGAGGACTCAGAGACCACCAATCATGAAGCCGTACTGGACGTGAGCAAAATGCGATCAGAAATGCTGCAGAAGCTCATTTCTGAGATCATTATCCGTATGGACATTAATAACAATGAAGCATGACCATAGTTCCAAGTAGTTTCATCAAATCTGCAGTCGCTTTGACTAACAGAGGTtccttaattttttatttttaataacatatatctgttgttattattattaggtggcCAGTCACTGTGATTGAACACCTTGTTGTTTTGAACTGTCTCATCACTCACCAAATATTGTACAAATACTACAGTAGAAGGTTTTATAATATCAAAATAACATACCGCTCGTCACATTTTTGAATGTTGCACCTTATTGATAGAatgtatgtgggtgtgtatgggtgggtgattatttgaaaaaaaaaaaaaactggcaccACTGGCTAATCAGATTTCAGAAAGCATTTGAAAGGCATAGCGGTAACCTCTAGTAAAATATGAGTGGCATGCATAATAATTGGCCACTCTGAAGCATTATTCCTTTTCTCAGAGACTCTGCTTCAAATTATCCACCTCACTGAATCAGATAACTTTTCAAATATGAATGTTTCTTTGGCTTAGTTTTGGATTGCAAATTCAAATCTCAGCTTCACCAAGCGTCGGCAGTTTCTCCCCTAAGCAAGACTCTTCCACAAAGCAAATTAACTTAATAAATCAGGCATTTTTCAACAAGCCTGACTAAATTCCATCAATTTTGGTTCCACAAAGGAAGCTAATTTTAAACCTGCTCAGTTACCATATCAACATGCTTTTGGACAAAACTGCTTTGTGCTAAACTAAGCTTGAAACTTAGCTTGATAAATTCTTTTCAACAAACCATGTGCTGGATTTATTGACTTAAATTGAATGACATAAATGACttaaagaaacacaacaaaTAGACTTGAGAAAACAAACTAACATGCaagaaaagaaaccaaaaacTATATGCAACAAAACTAAACATAAATCAGAAATTCATACACAAGCAttaactacacacaggtgataAGGATAACAGGTAAGCCTCTATCTATAGAACTGGCTCAATCATATTTACTGATGTTACTCGTAAAGATATCTGAAGCACACATATTTGGAAGAAGAGTACTATTAACAGATATCTAAGAGTGCATAGAGAACATCTAATAGACAGTCTATTTGTCTAACTATATTTATTCCAACTGACCAAAGGAATGAACactaaaactaataaatacCTTTATACTGTTATGGATTGTCAAGTAATGCAATAATTATGCTCCAATAAAAAAGTATCTGGCCAAAAGGGACAAATTACCTAAATAGTTTATTACCTGCATAAATGTTAGAAAGTGACGCACATAGCAATCTGAGCTAAGATGGAGACAGTTCAGACATCAGTACTGGGTATTATGGCACGGGTGAAAGAGCCCAGTTGTGCTGACAGTGAATCCATGAACTGCTCCCATATACTATGGGCATACAAGGGGGATGATCCTGGGGAAGGACTGAAAGCACCaccataatatttttttattctctaaCAAGTCTAAGTGTGTCAAGGGCTCAGGACATTCCCCTTCTGAAAACGAAACCTCATTCTGTGTCTGAACGTGACAAGCAttattattcacttattcaattctattcaattaTTCACTGGTGTGTCTCTATTACAAGCTAGATAAGATAAGCAAGATAACCAACAAGCCAACCTAACCAGCTAGCACTCATACCCAAATAAAACACCAGATAACCATCAGTGGTGGGTGTGCATACATGTTGAGACCTTCagcaaagtcacaaagtgactGATTTTACTACAAATACCTTCAGGCCACATGAGATCTTTCATGGAATCTACTCACCAAGTGTCTATTGTGTGTGGTTCCAAATAACAGGGAACCCTGGAGGGTTATAATGCTGTGGTTTGCCTGCTGAATTCTGTGTAGTGTGGGCAGAATCAGAGAAAGAGGTGGAAAGGTGTATATTAGGCCAGGGCTAATGTGTGTGACCATGCTAGACACAGGGCCGGCGCTAGCTATAGGCAGAGCAGGCAATTGCCTAGGGCCTCGGGCTTGGAAGCGGGGCCTCCATAACCATACCAAACCTAtactcaaaagaaacaaagaaagcgCAGCTTGTGATGCAGGTATGTGAGCTGTCATCATGTATTTTtgattgtaaatatatattaaaataaacggAGCCTTATTCTGCCGATTCGCGTCAGCGCCATTTGAAGATGGATCATTATTTGCAGCCGGTTTA

Function

symbol description
pnp4a Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; iridoblast; neural crest; optic vesicle; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

NR:

description
purine nucleoside phosphorylase-like isoform X2

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935665.2 True 3079 mRNA 0.41 6 8813581 8819844

Neighbor

gene id symbol gene type direction distance location
maf1a LOC108254834,LOC108425756,LOC106565397 coding upstream 112937 8693677 ~ 8700644 (+)
zc3h11a zc3h11a coding upstream 130109 8673179 ~ 8683472 (+)
chia.2 LOC108280999,LOC108425699 coding upstream 153752 8656659 ~ 8659829 (+)
chia.1 LOC108255291 coding upstream 176771 8632261 ~ 8636810 (+)
cntn2 cntn2,LOC107727196,LOC107727774,LOC107558367 coding upstream 183379 8587864 ~ 8630202 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding downstream 49175 8869019 ~ 8879676 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding downstream 81829 8901673 ~ 8908531 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding downstream 98594 8918438 ~ 8926213 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding downstream 408598 9228442 ~ 9237329 (+)
inavab LOC108254772,LOC108410711 coding downstream 496554 9316398 ~ 9335379 (+)
G304600 NA non-coding upstream 51328 8761931 ~ 8762253 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding upstream 51938 8756598 ~ 8761643 (+)
G304575 NA non-coding upstream 95118 8718224 ~ 8718463 (+)
G304566 NA non-coding upstream 123872 8689493 ~ 8689709 (+)
LOC117599908 NA non-coding upstream 141884 8669638 ~ 8671697 (+)
G304669 NA non-coding downstream 119215 8939059 ~ 8939687 (+)
LOC113539633 NA non-coding downstream 184847 9004691 ~ 9016994 (+)
LOC113539427 NA non-coding downstream 199756 9019600 ~ 9021252 (+)
G304898 NA non-coding downstream 477525 9297369 ~ 9297578 (+)
LOC113539732 NA non-coding downstream 491876 9311720 ~ 9312791 (+)
nfasca nfasc other upstream 251879 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 786652 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2034223 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2310945 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2519832 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 716281 9536125 ~ 9551761 (+)
G305515 NA other downstream 1692827 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1944430 10764274 ~ 10773442 (+)
G305727 NA other downstream 2291895 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2321392 11141236 ~ 11178473 (+)

Expression


Co-expression Network