fndc10 (fndc10)


Basic Information

Item Value
gene id fndc10
gene name fndc10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 748649 ~ 752616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935674.2
TCTGTACTGGAATCAGTTCACCTGCTTCGAGTCTTCGGGTCTGAGGCGTTCGGTCATCACGTGACAGTGGCAGTGACAGTGATGAGCTGAACCATGCAGCCTGAGCCGGAACAATGAATTAATGCTTTCTGTTTCTTATAGAGttatagttttgtcttgtttgtattGTGATCAACGATTGCTTCTCCTGTCGACCACAAGATGGCGCCGCACactgacagcagcagcagcatcctCCATAACACTGCgccttcattttcttttctcacgtcctcttcatcatcctcctcatcctcctgaATGATGGAGGAAGCAGGCTGCTGGAGCGACGCACTGGAGGAGATGTGAGGAGGCAAAGCGCGACGTCATGACCCGAGATTATAAACACTCACTGACGTCATCGCGTCACTCACCTACATCCTCCACGACAGCCGTCAGGCGgccagaggaagagagaggaggaggaggaggaggacagcGACATGGTGCCTGCCTCATCACACTGTGGAAATCTGCATAAATCAGGGAAAGGCGGATTTTAGCTCAGCCTGATCACTTCCTTTGAGAACAGGCTGTgagagtgatgtgatgtgatgagatgagatgtgaCGGTCTGCGACGCTCCTCTCTCGGGTTCCTCCCGCTGTGACCGTGCCGCCTGGCTTCGCTGAGATGCGCGCAGAGACACAGTAAGGTACGAAAGTGTAATAATCCGCtcaggagagagaaatgaggaGCCACCGGAGCTGGCTGGTcgtctcctgtctctctgtgctgCTCTGCTGCTGGCCCGGAGCGAGCGCCTGGCGGACACGTGACGtcagtaataataattcttaCAGCCTGATAAAAGTCGCGCCACCGCACGTCAGAAGCAGAGACGGCGAGTTTGAGCCGAAGCGGCAGGAAAGCGGAACCAACTCGAGCAGCAGCAACGGCGACTTGCTCAAAGAAGGTAGCGTGTGTGCGTACCGCGTCCTGGAGAGAGGCGAAGACGGACGGCTATGTTTCCGACACGCTCGGGTCAACTTCACCTGTCCCGGCAGCACCTGCAGACAGGTGCGATCACCTGGAGGTCACCTGGTCGCCAACCTGCTCTCCAACAGCACTGTGCTGCTCCAGTGGACTTACCCCATGGTGCAGGATAAATCAGGACACGTTCTAGTGAACTCAGAGATCCCGACAGAACCCCCTACAGGGTCTCCACCTGCCCCACCAAAGATGCCCAGCGTGGGGCAGCGGGAGCCTCAGGGGGGCTTCAGGATGAGGTGCTGGTGGAACGGCAGCTACACTCAGTTCGAGTGTGCGAGTGTGCACCTGGCCAGCGGCTGCAGGGACTATTTACTgagcgagctccatgaaaaTGTGCCCTACCGAATCTGCCTGCAGCCGGCGGTTTGGGACGGGCCCGGCGAGTGTGTGGAGTTCAGCGTGTCGCCCACTGGGATGCAGGACATCGTGATTGCCATGATGACAGTGGGCGGAGCTATCTGCGTGATGCTCGTCATCATCTGCCTGCTGGTGGCCTACATCACAGAGAACATCATGAGTCCCAACGCGCAGCACACACTCGCCGCACAGCAGCACTCTCGCCGTTCACACAACACGTACCTCTGAACATGCAgggatcaacacacacacacacacacacacacacatcaacagtTGAGACCATGGTTTCTTCAGGTAGGACGTGTTCCTGAATCAGTCACTGCCCTCTGATCAGCTTCATcagcttttttccccagaaagaCGAACccactgtttgtttgtttgttttttttctgtagtgtaCGCTTCCTGGGTTAAAGTTCACCTCATTGTACTCGACAGTAAATAAACATGAtttcatcacaacacacaccctTTTACTTTCAAATGAAATGGCTTTCTGGTCAGTTTTATTTGctttcagtcaggtttcagtTCGATATTAAAATATGCTCCATCACTTTGGCTTCGTTGATGAACAGATCAGCAGAGCTCCACACTTCAGGTTTGTTTTACGAGAAGCTGAGGCgcacactgatgacatcagATGGCAGTGAGTGgttaaacagaaacattcctCACCACGTTCATCTCTCTGTACCTACacataattctaaaaaaaatccacaaacacCCTCCTACAGACCTCTCATATGAACAGATACACACTTCTGTCACTTATGGCACTCAAACAAAACCGTAACAAATGAGGTCCTCGACAAACACTCTAACAGCCTCttacagcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacaaactctaCTATCTCTGTGAGCTTCTGGTGACACCCACGCCAAAAAGACTGTggcaaaatacacacatcataaaACTCGTTTTAGTTTAGACATGAGCATTGctgcattttgtgttttctttttatcttgaagcaaaaaaataataaaatctcacTGGAACCTCGGTTCTGATCGGATCCATGTTCACATatcacagcgtgtgtgtgtgtgtgtgtgtaaacacacagatcaggtagaaaagcaaataaaaacaagactTGATTTATACATCTACACACAAACATCCGCCAATAAGCTGTTGCGCCCCCTACCTGTGACTGTGTGAACTGACGTGTACCACTGAACTGTGCACATTAGCGAAACTAGATTAGCCAGGTAGCCGTAGGAGCATGTGATTACAATAAAAGGTTTAAACTTaagattttttgttaaatatagaTAACCGAGTGAAGGATGATCGTGTCATGAGTGATATGAGTTTAAAGGAGGAGTTTGTCTGAAAATGCTATCGTGGCTAATGCATCTAGCATCTTTATGGTACACCTGATTTGCCTATATTTTCAACCGAAACATAGTGAagaagtttaaaacaaagagTTGGAGATATGATTATTAGGTTGAAAGCTGATGGGAAAATGATTGAATGCTAACTGCATCCTATTAGCATTCGTTTAgcattagcaacattagcattttAGGCAAAGTGTTCTTACTGCTTTGAGAATGAAAGAAGcacctgacttttttttaatagtttttctcCTCTATGGGAGcaatgctgttttatttctgtaggaCTTTACAGTAATACAGTCGGCTAACACACGCCATCGTTGTGGTGGCTACAATAAGATTTTATGCCTTACGAAGTTAATAATATTCAGTTATACTGAGGACACGCAGACTGGTGAAGCAATCTGAATACTGtgctattttttcctctctgttatACAAAACCTCTTGTGTCAATAAAAGAATAATTAGTCTAAtttcaaa

Function

symbol description
fndc10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10).

NR:

description
uncharacterized protein LOC110494369

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935674.2 True 3307 mRNA 0.48 3 748649 752616

Neighbor

gene id symbol gene type direction distance location
LOC113539444 vwa1 coding upstream 8297 725540 ~ 740352 (+)
LOC113539512 LOC108281094 coding upstream 45289 699026 ~ 703360 (+)
nbl1 nbl1,LOC105897883 coding upstream 52534 687951 ~ 696115 (+)
dstyk dstyk coding upstream 141028 571588 ~ 607621 (+)
ccnd3 ccnd3 coding upstream 193937 548833 ~ 554712 (+)
ssu72 ssu72,LOC107690546 coding downstream 738 753354 ~ 761217 (+)
tmem240b tmem240 coding downstream 9650 762266 ~ 769955 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding downstream 33739 786355 ~ 793053 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 122777 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 132099 884715 ~ 888350 (+)
G299625 NA non-coding upstream 146536 601558 ~ 602113 (+)
G299618 NA non-coding upstream 183141 565276 ~ 565508 (+)
G299528 NA non-coding upstream 494417 251723 ~ 254232 (+)
G299522 NA non-coding upstream 512159 236076 ~ 236490 (+)
G299482 NA non-coding upstream 531240 209994 ~ 217409 (+)
G299679 NA non-coding downstream 55543 808159 ~ 809350 (+)
G299708 NA non-coding downstream 85747 838363 ~ 838915 (+)
G299695 NA non-coding downstream 92852 845468 ~ 847722 (+)
G299719 NA non-coding downstream 120619 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 189220 941836 ~ 943526 (+)
LOC117599902 NA other upstream 21727 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 227706 515540 ~ 520943 (+)
dram2b NA other upstream 388391 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 559332 165615 ~ 189317 (+)
mfap2 mfap2 other downstream 5893 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 90237 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 110642 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 695826 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 744244 1496860 ~ 1499172 (+)

Expression


Co-expression Network