slc25a34 (slc25a34,LOC102777532)


Basic Information

Item Value
gene id slc25a34
gene name slc25a34,LOC102777532
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 875393 ~ 883546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935675.2
ATTGGCTGAGAGGGAGAGCGGGGCGGGGCTAGCGCGGTGATTGAGGTTTTTAGAAGCATGTTTACAGCGCCACTGTCAGAACGAGGGCGAGGGACAGAAAGCGGAGAGGATTGTTCCTGAGATCATAACAAGGTCCTCGAGTCCCAGATGACCGACTTGCAGCTCCCTCGTGTGTGTGCGGTGGAGTTTCTGCAGCTGTGAGGTGTGATGTAACTCCAGCTCCAGCTTCAAATCGTTCCTCAGTGATGAAAAGCGAAGCTGCCGTGTGACCGGTCTGTAATTTCAGGTGGACAGGTGAGCAAACACTGCCGGACTGGTGACGTCACACCGCACTACACCGTGCCGGTGTAcatgttgttcccaaactcctCAGGAACCATCTGACTGGTTGAGCTGGACGAGCGCTCGTTCTTTCCGTCACCGCCATCGTCATCATGGGCGCGATGGCTGATCCTGAACTCGTCGACCGCCCCCCAGTCACGCCGTTCATCACCCAGAGCTCCATTCCTCCTCTACCTCGTACTTCTTCAAGGTCAGGTAACCGTCCCCAGGCGCTGTGGCCGCCGCTGGACTTCACTCTGGGTTCTCTGGCGTGCTGTGGCGCCTGTGTGTTCACCAACCCGCTGGAGGTGGTGAAGACTCGTCTGCAGCTGCAGGGGGAGCTGCAGGCGCGCGGCTCGTACCATCAGCACTACCGAGGGGTGCTGCAAGCTCTCTGGCTGGTGGGACGCACCGACGGCCTGCGCGGCCTGCAGAAGGGCCTCGCCGCCGGACTGCTCTACCAGGGGCTCATGAACGGCGTCCGGCTCAGCTTCTACTCCTACACACAGGTCTCAGGGATCAGCGACGTGCCGGGGGGAAACGTGGCGTCAGGGGCGGCCGCTGGGGCTTTAGGGGCCTTCATCGCCTCTCCGGCTTACCTGGTAAAGACACACCTGCAGGCACAGTCTGTGGAGGCCATCGCTGTGGGTCACCAGCACAACCACCAGGGAATCTCCAGCGCCTTCGCTACGATATACAGGCGTGAGGGACTGATGGGTCTGTGGCGGGGCGTGAACGGCGCCGTGCCGAGGGTCATGGTGGGCTCGGCAGCTCAGCTCGCCACCTTCAGCTCGTCCAAAGagtggctcacacacacacagTGGTTCAGTCCGGACAGCTGGCTCATCGCTCTGATGGCGGCTATGGTTAGCGGCGTTGCCGTGGCGATCACCATGACGCCGTTCGACGTCATCAGCACGAGGCTTTACAACCAGCCTGTGGACGAGTTGAGGAAGGGTCGGTTCTACACCGGGTTCCTGGACTGCCTGGTGAAAGTGAGTCGTACGGAGGGGGTTCTGGGTCTGTATAAGGGGATGGGTCCCGTGTTCATGCGCCTGGCGCCTCACACCGTGCTCAGCATGCTGCTGTGGGACGTCCTGAGGCAAAAAGCTCTGCAGCACTACGCGCTCTGAGGAGATCCTCATCACACCGCTGAGGGTTCTGCTCGGTCCTGCAGCCTCGCTTCGTTCAGCTCTGATGCGGGGAATTCGGGAATCTCACACGCGGCGTGAACGTCTGAGGAAAAGCGCCGagttcttcctttctctctcctagAACTCTCTCTGGAATCAAAAGCTTCTAGAGTTCTCCTCATGGATGTTTAATGTGAAGACATGAAAATATTCTCGCCGTTCAATTGGCAAAAGTTGTTAGAGCAACGGTTGCTAGGCGACTGGGAAAGACGGACACAAGCACAAGCTGATCATGACCGAAGCTAAGAATTTAGCTAGCtggtacatacacacagtgacgGTAGAAAAGAGAGAATATTCACAGACATCAACAgttccctcagatgtgttggtaaatttactaacaaaagtgtgtgtgtgtgtgtgtgtgtgtgaaattaaaaatttagcATCCACTGCTAAACTAAACGTAATGATGAGAAATGCTAACATCAGGTCTCATTTAGGACACTGGATACGAAGGAATCTATTCGTAAATCTTTCTCAGGAGCTTTTACACACGAAATATAGTGatgaaaatccagttaattGTGAAAATCAAATCGTTTCCTACGTTTCTCTCCTGAATTCTTGTACATTTGCGTATAAGGAAATTGTCGACGAGTTCCTGTGATTTTATAAACGGATTACGCTGTAAAGCTTAAATCACTTCTTTATTTCAGTCGgcattttgtgaaactcagttcaaattcaaatccataaattaaccTTGTAAAAGGAGcaggagttagtgtgtgtctgtggtagctgcagtggctgagctgcattattggaagatttagcacacgcTGCAGTTAGGGGGCGCTGTTTCACCGTTCAGACGTCGTTTTTCACTCTGTGAGCTGTTACGAGTTatgagttttgtgggcgtggttaaatgcaaatgagctgcgTCAGGAACgtgcttggtaatttacagcTGATTTAAGTTTAGCAAGAAAATCAGAGAGAAACGTTTGAAAATCTTTCGGGGagattttagttcagtttggtgAAAACATTTACGATATGAACTCAGGAGGATTCAGAAATTCCAGCTGCGGTTAACGGTTTAGTCTTGAAaactacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgaacacatttACTCGTGTGAAATGATATAAAAGTCACGAAGGACTGAACACGCTGTAGTTTTCTGCGTGACGCTGCTTCAGCTCTGGCGCTGTGCGTCATGCGTTAAAGACTGttacgtgattttttttttttttttttttaatttttaattaacaaacagAAGACTgataaaacctaaaaaaaaa
>XM_026935676.2
CACTGTCAGAACGAGGGCGAGGGACAGAAAGCGGAGAGGGTTTTTCTCACACCTTGATGGTTGTTACAGATTGTTCCTGAGATCATAACAAGGTCCTCGAGTCCCAGATGACCGACTTGCAGCTCCCTCGTGTGTGTGCGGTGGAGTTTCTGCAGCTGTGAGGTGTGATGTAACTCCAGCTCCAGCTTCAAATCGTTCCTCAGTGATGAAAAGCGAAGCTGCCGTGTGACCGGTCTGTAATTTCAGGTGGACAGGTGAGCAAACACTGCCGGACTGGTGACGTCACACCGCACTACACCGTGCCGGTGTAcatgttgttcccaaactcctCAGGAACCATCTGACTGGTTGAGCTGGACGAGCGCTCGTTCTTTCCGTCACCGCCATCGTCATCATGGGCGCGATGGCTGATCCTGAACTCGTCGACCGCCCCCCAGTCACGCCGTTCATCACCCAGAGCTCCATTCCTCCTCTACCTCGTACTTCTTCAAGGTCAGGTAACCGTCCCCAGGCGCTGTGGCCGCCGCTGGACTTCACTCTGGGTTCTCTGGCGTGCTGTGGCGCCTGTGTGTTCACCAACCCGCTGGAGGTGGTGAAGACTCGTCTGCAGCTGCAGGGGGAGCTGCAGGCGCGCGGCTCGTACCATCAGCACTACCGAGGGGTGCTGCAAGCTCTCTGGCTGGTGGGACGCACCGACGGCCTGCGCGGCCTGCAGAAGGGCCTCGCCGCCGGACTGCTCTACCAGGGGCTCATGAACGGCGTCCGGCTCAGCTTCTACTCCTACACACAGGTCTCAGGGATCAGCGACGTGCCGGGGGGAAACGTGGCGTCAGGGGCGGCCGCTGGGGCTTTAGGGGCCTTCATCGCCTCTCCGGCTTACCTGGTAAAGACACACCTGCAGGCACAGTCTGTGGAGGCCATCGCTGTGGGTCACCAGCACAACCACCAGGGAATCTCCAGCGCCTTCGCTACGATATACAGGCGTGAGGGACTGATGGGTCTGTGGCGGGGCGTGAACGGCGCCGTGCCGAGGGTCATGGTGGGCTCGGCAGCTCAGCTCGCCACCTTCAGCTCGTCCAAAGagtggctcacacacacacagTGGTTCAGTCCGGACAGCTGGCTCATCGCTCTGATGGCGGCTATGGTTAGCGGCGTTGCCGTGGCGATCACCATGACGCCGTTCGACGTCATCAGCACGAGGCTTTACAACCAGCCTGTGGACGAGTTGAGGAAGGGTCGGTTCTACACCGGGTTCCTGGACTGCCTGGTGAAAGTGAGTCGTACGGAGGGGGTTCTGGGTCTGTATAAGGGGATGGGTCCCGTGTTCATGCGCCTGGCGCCTCACACCGTGCTCAGCATGCTGCTGTGGGACGTCCTGAGGCAAAAAGCTCTGCAGCACTACGCGCTCTGAGGAGATCCTCATCACACCGCTGAGGGTTCTGCTCGGTCCTGCAGCCTCGCTTCGTTCAGCTCTGATGCGGGGAATTCGGGAATCTCACACGCGGCGTGAACGTCTGAGGAAAAGCGCCGagttcttcctttctctctcctagAACTCTCTCTGGAATCAAAAGCTTCTAGAGTTCTCCTCATGGATGTTTAATGTGAAGACATGAAAATATTCTCGCCGTTCAATTGGCAAAAGTTGTTAGAGCAACGGTTGCTAGGCGACTGGGAAAGACGGACACAAGCACAAGCTGATCATGACCGAAGCTAAGAATTTAGCTAGCtggtacatacacacagtgacgGTAGAAAAGAGAGAATATTCACAGACATCAACAgttccctcagatgtgttggtaaatttactaacaaaagtgtgtgtgtgtgtgtgtgtgtgtgaaattaaaaatttagcATCCACTGCTAAACTAAACGTAATGATGAGAAATGCTAACATCAGGTCTCATTTAGGACACTGGATACGAAGGAATCTATTCGTAAATCTTTCTCAGGAGCTTTTACACACGAAATATAGTGatgaaaatccagttaattGTGAAAATCAAATCGTTTCCTACGTTTCTCTCCTGAATTCTTGTACATTTGCGTATAAGGAAATTGTCGACGAGTTCCTGTGATTTTATAAACGGATTACGCTGTAAAGCTTAAATCACTTCTTTATTTCAGTCGgcattttgtgaaactcagttcaaattcaaatccataaattaaccTTGTAAAAGGAGcaggagttagtgtgtgtctgtggtagctgcagtggctgagctgcattattggaagatttagcacacgcTGCAGTTAGGGGGCGCTGTTTCACCGTTCAGACGTCGTTTTTCACTCTGTGAGCTGTTACGAGTTatgagttttgtgggcgtggttaaatgcaaatgagctgcgTCAGGAACgtgcttggtaatttacagcTGATTTAAGTTTAGCAAGAAAATCAGAGAGAAACGTTTGAAAATCTTTCGGGGagattttagttcagtttggtgAAAACATTTACGATATGAACTCAGGAGGATTCAGAAATTCCAGCTGCGGTTAACGGTTTAGTCTTGAAaactacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgaacacatttACTCGTGTGAAATGATATAAAAGTCACGAAGGACTGAACACGCTGTAGTTTTCTGCGTGACGCTGCTTCAGCTCTGGCGCTGTGCGTCATGCGTTAAAGACTGttacgtgattttttttttttttttttttaatttttaattaacaaacagAAGACTgataaaacctaaaaaaaaa

Function

symbol description
slc25a34 Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A34 (solute carrier family 25 member 34).

NR:

description
solute carrier family 25 member 34-like

GO: NA

KEGG:

id description
K15117 SLC25A34_35, OAC1; solute carrier family 25, member 34/35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935675.2 True 2834 mRNA 0.51 6 875393 883546
XM_026935676.2 False 2794 mRNA 0.51 6 875463 883546

Neighbor

gene id symbol gene type direction distance location
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 82340 786355 ~ 793053 (+)
tmem240b tmem240 coding upstream 105438 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 114176 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 122777 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 135041 725540 ~ 740352 (+)
LOC113539452 NA coding downstream 1169 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 4826 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 22883 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 67997 951543 ~ 967971 (+)
LOC113539739 tmem43 coding downstream 79481 963027 ~ 969188 (+)
G299719 NA non-coding upstream 1920 873235 ~ 873473 (+)
G299695 NA non-coding upstream 27671 845468 ~ 847722 (+)
G299708 NA non-coding upstream 36478 838363 ~ 838915 (+)
G299679 NA non-coding upstream 66043 808159 ~ 809350 (+)
G299625 NA non-coding upstream 273280 601558 ~ 602113 (+)
G299659 nckipsd non-coding downstream 58290 941836 ~ 943526 (+)
G299734 NA non-coding downstream 70889 954435 ~ 990707 (+)
G299735 NA non-coding downstream 81984 965530 ~ 1006953 (+)
G299773 hyal2 non-coding downstream 371520 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 388601 1272147 ~ 1272673 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 2637 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 30523 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 70295 758509 ~ 805098 (+)
LOC117599902 NA other upstream 148471 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 354450 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 564896 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 613314 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1169537 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1257976 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1832116 2715662 ~ 2723581 (+)

Expression


Co-expression Network