mapkapk3 (mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890)


Basic Information

Item Value
gene id mapkapk3
gene name mapkapk3,LOC102305022,LOC101473327,LOC102199310,LOC102784126,LOC103365890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2827888 ~ 2852258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935704.2
AAGTAAAGGCGTTTGAACACTCCGTAGTGCACTAGCTGCGCTCGTGATGCGCGTTTGGCACCGGGCCGGAGAGGAACCCGCACGCAGCCGGTCAGCTTTCTCTTTAAAAAGTCTGTGACTTTCTCACAGCAGTACTGCGGCTCAGAGTTCGGGGGTGACCGTAAGAGCTATTTTTATATGAAGGACCAAGAGATTTTTCAGTCTGTAGGaactttttaaatgaagcaCTCCTCTAGATTTCAGAGCCAAACTTGAGTAGGGTAGGTGCGGAATACAGGCGTGCTGTTGCGCTGTAATCTGGGATGAGTTCTGCGCGCCAGTAAATCACGCCGGGTTTATTCTGGGTGGAGTGTCATCCCATTTCAACCCGGAACATGCTGCAAAATGGAAAAACCAAACAAGAGCAGCCAGAGACGAAATCAGAGACGGAGAATGAGAGTAAGAGTGAAAGCGCAGCGACCAAACCGGAGAAGGAGCGCGAATCCACACACTTCCCCATGCCCAATCCTAACCCTGCTGCTGGATACCCGAAACTGGAGATAAAGCGCAACGCCGTGACGGACGACTACAAGATCTCCACTCAGGTCCTCGGTCTGGGGATCAACGGCAAGGTGCTGGAGTGTTTTAACAAGAAAACCGGGGAGAAGTGCGCCCTGAAGATTCTCTACGACAGCCCGAAAGCACGCCGCGAAGTGGAGTTGCACTGGCGCGTCTCCAACGGGCCGCACATAGTGCGTATCCTCAGCCTCTACGAAAACATGCACCATGGGAAAAAGTGCCTGCTCATTATCATGGAATGTATGGAAGGAGGAGAGCTCTTCAGTAGGATTCAGGCCAGAGGAGACCAGGCCTTTACTGAGAGAGAGGGCTCTGAGATCATGCGAGACATCGGCACTGCCATCGAGTACCTGCACAACATGAACATCGCACACAGAGACATCAAGCCGGAGAACCTGCTCTACAACAACAAAGACTCCAACTGCGTCCTCAAACTCACAGACTTCGGCTTTGCGAAGGAAACCACGTTGCACAACCCCCTGCAGACGCCGTGCTACACTCCGTACTACGTCGcTCCTGAGGTTCTCGGTCCTGAGAAATATGACAAATCGTGTGACATGTGGTCTCTGGGTGTGATCATGTACATCCTgTTGTGTGGCTTCCCACCGTTCTACTCCAACACGGGTCAGGCGATTTCCCCCGGCATGAAGCGGCGCATCCGCATGGGCCAGTACGAGTTTCCCAACCCCGAGTGGGCTGAAGTGTCAGAGGAAGCCAAACAGTTGATTAACCAGCTGCTGAAGACTGACCCTAATGAGAGGATGACCATCTCACAGTTCATGAACCACCCCTGGATCAATCAGTCCATGGTGGTTCCTCCAACGCCGCTGCACACCACACGCGTCCTCACTGAGGACAGAGAGCTGTGGGACGAAGTGAAGgaggagaTGACGAGTGCTCTTGCCACCATGCGTGTGGACTACGACCAGGTGAAGATTAAAGACCTGGACACATCCAGCAACCCACTGCTCAACAAGAGAAGGAAGAAAgctgcagcagcaggaggaaaGGCCGGAGCCACCGTCTGCAACAGCCAATGAAGCacgagggagagacagaaaaaagaagacaaatgtACAGATTTAGAGATGAGTGAAGCATGGAGAGGTGAAGGAGGAAGTGAAAGTGAGGACAGAATGAGGACACTCCTTCACTGTAACCAgcacgtctcacacacacacacacacacacattatctgtgtgtgtttgtagatgtttagatttgtatttttacagatGTGTTgcttatattatttttacaatatcTGTAGCTGACACACTTAGTTGcacatgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgttcggtgcATTCATAAGGCCTTGAGTTTATTAATACAGAAGCTTTCCCGAGACACTACACACCGACGGTACACTGCCAGTGTAAAGCAGTAAAGTTTATCCTTCCTCCTCACTGCCTCCTCTTCCTCGTTGACTCAGACAAGAAGAAGATCGACTCTAGGAGAACACACACTTCAACGGACACACTCTACTAagattgattgtgtgtgtgttttgtacttCACTGGTGGGCtgcatcatcatcctcatcatcatcctcatcatcacagCACAGGATGCTCTGTTTggatttgtctttctcttttagctccttttttaatcagaagaaaattttaatttcattttccgTGTTTGTTAATTTAAGACACTTACAGCAacattttgtccaaaaaaaagaagttttttgTGATGTTTGACGTTTCCCTTAGAGTCTTTTATTATGAATTTGCTAAATAAGATTTGCCAGAGAGCAGCCACTGTATTTAAGGCaacattgttttaataaaaaaaaaataaatcacaactGAA
>XM_026935705.2
GAAGTAAAGGCGTTTGAACACTCCGTAGTGCACTAGCTGCGCTCGTGATGCGCGTTTGGCACCGGGCCGGAGAGGAACCCGCACGCAGCCGGTCAGCTTTCTCTTTAAAAAGTCTGTGACTTTCTCACAGCAGTACTGCGGCTCAGAGTTCGGGGGTGACCGTAAGAGCTATTTTTATATGAAGGACCAAGAGATTTTTCAGTCTGTAGGaactttttaaatgaagcaCTCCTCTAGATTTCAGAGCCAAACTTGAGTAGGGTAGGTGCGGAATACAGGCGTGCTGTTGCGCTGTAATCTGGGATGAGTTCTGCGCGCCAGTAAATCACGCCGGGTTTATTCTGGGTGGAGTGTCATCCCATTTCAACCCGGAACATGCTGCAAAATGGAAAAACCAAACAAGAGCAGCCAGAGACGAAATCAGAGACGGAGAATGAGAGTAAGAGTGAAAGCGCAGCGACCAAACCGGAGAAGGAGCGCGAATCCACACACTTCCCCATGCCCAATCCTAACCCTGCTGCTGGATACCCGAAACTGGAGATAAAGCGCAACGCCGTGACGGACGACTACAAGATCTCCACTCAGGTCCTCGGTCTGGGGATCAACGGCAAGGTGCTGGAGTGTTTTAACAAGAAAACCGGGGAGAAGTGCGCCCTGAAGATTCTCTACGACAGCCCGAAAGCACGCCGCGAAGTGGAGTTGCACTGGCGCGTCTCCAACGGGCCGCACATAGTGCGTATCCTCAGCCTCTACGAAAACATGCACCATGGGAAAAAGTGCCTGCTCATTATCATGGAATGTATGGAAGGAGGAGAGCTCTTCAGTAGGATTCAGGCCAGAGGAGACCAGGCCTTTACTGAGAGAGAGGGCTCTGAGATCATGCGAGACATCGGCACTGCCATCGAGTACCTGCACAACATGAACATCGCACACAGAGACATCAAGCCGGAGAACCTGCTCTACAACAACAAAGACTCCAACTGCGTCCTCAAACTCACAGACTTCGGCTTTGCGAAGGAAACCACGTTGCACAACCCCCTGCAGACGCCGTGCTACACTCCGTACTACGTCGcTCCTGAGGTTCTCGGTCCTGAGAAATATGACAAATCGTGTGACATGTGGTCTCTGGGTGTGATCATGTACATCCTgTTGTGTGGCTTCCCACCGTTCTACTCCAACACGGGTCAGGCGATTTCCCCCGGCATGAAGCGGCGCATCCGCATGGGCCAGTACGAGTTTCCCAACCCCGAGTGGGCTGAAGTGTCAGAGGAAGCCAAACAGTTGATTAACCAGCTGCTGAAGACTGACCCTAATGAGAGGATGACCATCTCACAGTTCATGAACCACCCCTGGATCAATTCCATGGTGGTTCCTCCAACGCCGCTGCACACCACACGCGTCCTCACTGAGGACAGAGAGCTGTGGGACGAAGTGAAGgaggagaTGACGAGTGCTCTTGCCACCATGCGTGTGGACTACGACCAGGTGAAGATTAAAGACCTGGACACATCCAGCAACCCACTGCTCAACAAGAGAAGGAAGAAAgctgcagcagcaggaggaaaGGCCGGAGCCACCGTCTGCAACAGCCAATGAAGCacgagggagagacagaaaaaagaagacaaatgtACAGATTTAGAGATGAGTGAAGCATGGAGAGGTGAAGGAGGAAGTGAAAGTGAGGACAGAATGAGGACACTCCTTCACTGTAACCAgcacgtctcacacacacacacacacacacattatctgtgtgtgtttgtagatgtttagatttgtatttttacagatGTGTTgcttatattatttttacaatatcTGTAGCTGACACACTTAGTTGcacatgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgttcggtgcATTCATAAGGCCTTGAGTTTATTAATACAGAAGCTTTCCCGAGACACTACACACCGACGGTACACTGCCAGTGTAAAGCAGTAAAGTTTATCCTTCCTCCTCACTGCCTCCTCTTCCTCGTTGACTCAGACAAGAAGAAGATCGACTCTAGGAGAACACACACTTCAACGGACACACTCTACTAagattgattgtgtgtgtgttttgtacttCACTGGTGGGCtgcatcatcatcctcatcatcatcctcatcatcacagCACAGGATGCTCTGTTTggatttgtctttctcttttagctccttttttaatcagaagaaaattttaatttcattttccgTGTTTGTTAATTTAAGACACTTACAGCAacattttgtccaaaaaaaagaagttttttgTGATGTTTGACGTTTCCCTTAGAGTCTTTTATTATGAATTTGCTAAATAAGATTTGCCAGAGAGCAGCCACTGTATTTAAGGCaacattgttttaataaaaaaaaaataaatcacaactGAA

Function

symbol description
mapkapk3 Predicted to enable calmodulin binding activity; mitogen-activated protein kinase binding activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including intracellular signal transduction; protein phosphorylation; and toll-like receptor signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in patterned macular dystrophy 3. Orthologous to human MAPKAPK3 (MAPK activated protein kinase 3).

NR:

description
PREDICTED: MAP kinase-activated protein kinase 2-like

GO: NA

KEGG:

id description
K04444 MAPKAPK3; mitogen-activated protein kinase-activated protein kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935704.2 True 2411 mRNA 0.48 10 2827889 2852258
XM_026935705.2 False 2409 mRNA 0.48 10 2827888 2852258

Neighbor

gene id symbol gene type direction distance location
dnah1 dnah1 coding upstream 826 2786885 ~ 2827062 (+)
chchd4a chchd4,LOC107574929,LOC107718204,LOC102783083 coding upstream 61483 2763662 ~ 2766405 (+)
ldlrad2 ldlrad2 coding upstream 66721 2754776 ~ 2761167 (+)
atxn7l2a atxn7l2,LOC106565127 coding upstream 113737 2704703 ~ 2714151 (+)
sypl2a sypl2 coding upstream 130921 2684049 ~ 2696967 (+)
tada3l tada3,tada3l,LOC107656064 coding downstream 34466 2886724 ~ 2893259 (+)
hmces hmces coding downstream 42580 2894838 ~ 2903607 (+)
tmf1 tmf1,LOC107729398,LOC107600287 coding downstream 72875 2925133 ~ 2941266 (+)
eogt eogt,LOC107729408 coding downstream 89599 2941857 ~ 2958705 (+)
tafa4b fam19a4,fam19a2,LOC107655986,LOC107558879,LOC104966247,LOC108231490 coding downstream 113106 2965364 ~ 3013692 (+)
G300843 NA non-coding upstream 90980 2736478 ~ 2736908 (+)
G300842 zbtb40 non-coding upstream 91881 2735036 ~ 2736007 (+)
G300841 zbtb40,LOC107659551,LOC107575478,LOC107582425 non-coding upstream 98281 2728484 ~ 2729607 (+)
G300840 NA non-coding upstream 100377 2727304 ~ 2727511 (+)
G300839 zbtb40 non-coding upstream 101296 2726264 ~ 2726592 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding downstream 54450 2906708 ~ 2908054 (+)
LOC113539486 NA non-coding downstream 176682 3028940 ~ 3060846 (+)
G301487 NA non-coding downstream 600413 3452671 ~ 3453505 (+)
G301506 NA non-coding downstream 669534 3521792 ~ 3530359 (+)
G301792 NA non-coding downstream 1066072 3918330 ~ 3918531 (+)
LOC113539549 LOC108254930 other upstream 104307 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 638971 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 767247 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 1328716 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 1333243 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 998303 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1305974 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 1598782 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2358386 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 3348188 6200446 ~ 6293749 (+)

Expression


Co-expression Network