tmem240b (tmem240)


Basic Information

Item Value
gene id tmem240b
gene name tmem240
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 762266 ~ 769955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935707.2
GAGGAGTAATCTGAGCATAAAGCTTGGCCCTGAGTGTGTGGTTAAAGTGCATGGCTCTTCTCTGCATCCGTGTCATGTGTCCTGTGCTCAGTGTTCCCAATTAAGCTAATGGGGGTTTGCTGTCActcttctccacacacacacacacacacacacactcactggtgCAGAGAGAAAGGCATTTATTCAGTACATTTATACCCAAGCTCAGGTTCAGCAAAGCTTTTGCAGACCCTCAATCTCCAAATCTAACCAACTTTATCCATCACTGAGGGCTTTGGATTTCCTCGAgggacaatgatgatgatgatgatgatgatgaaggagcTGCCCAGACTTTAATGTGAATGACTGCGTGTGCATCCTGTTGGTCCAATCGCAGGAAGGGAGGAGGATTCAGccagcagcagcatcagcagcatcagcagAAGCGGCAGCAGCCACCAAACCCGTCTTATAATGAATTAGGATTGGAAATGGAGCTGCTCGTATTCGCACGCGCTTCATCcggatgtgatgtgatgtgatgtgatgcttCATTCTGAGATAATTAAGCACCGCGTCGGTCGTGTTGCGATGCTCCTGCTGCTCTTCCTGAATCCGATCTCCTAGTAATCTGTTGCAGAGGTGGGAGATCTGCGGGAGCCGCACATGCGTGACACCTGATCGGTAAACGGAAATTCGGTGGCCTCGAGGCTCCGGTGAAGCCTCAcgtttttggtgtgtgtgtgtgtgtgaacgcaTGAAGACTGGTGTGTGAGGTGCAGTGGGGAACTTGTGCCTGATGGACTGTGATGGGAGACGATGATCTTTATGGCCGTCGGCGCAGCTTTGGTGATGGTGATAGCGCGCTGTGTGGACATGAACGCGCTGCTCGATCGCTTCCACAATTACATCCTTCCTCATGTGCGAGGCCCGGAGCGGGTGTGTCACTGCACCTGtggcagACACCGGCTGCAGTACGTGATCCCGTACGAGGGTTCGAGCTCGCCAGACCGAGACCttccagcagggggcagcagtGTGACTAAGCAGGAAGTGGACCTGGTTCTGGGGCTGCTGCTGGGCTTCTGTATCAGCTGGGTTCTGCTCTGGCTGGACAGAACCCTGCACCGGGTTCTGCGGGCTTGGAGAACCCACCCACAGAAAGACGTGTGGAGGTCGTGGAAGTGGGTGACGAGAATGTGTAACGTACAGGAGCTTCGCAGGCGGCTGCAGCAGCGCAGGAACAACAGCGGAGGGGACAACAACGTGGTACAcgtcaaacacaaacactaccACAACGGGCACCTGAGCCCACGCAGACtctaatccacacacacacacacacacacacacacacacactgcagcaggcATCTGGGCCTAGAAGCACTCTTTGACAATGGTCTCAAAGCAgctcgctctctcactcactcacacacacacacacacacacacacacacacagtactaatTGATGCTTCCCCTGAACTCACACTGACCTGATTCTCCAAGGATGTGACTGTATTTAACGCACAGCAGGACTGAAGTCCCTGaactcttgtg
>XM_026935708.2
CTATATAGTATAGTAGTGTACTATGCCGTTTAGCACGTTAGCCTTGTCATTAGGTGATAGCGCGCTGTGTGGACATGAACGCGCTGCTCGATCGCTTCCACAATTACATCCTTCCTCATGTGCGAGGCCCGGAGCGGGTGTGTCACTGCACCTGtggcagACACCGGCTGCAGTACGTGATCCCGTACGAGGGTTCGAGCTCGCCAGACCGAGACCttccagcagggggcagcagtGTGACTAAGCAGGAAGTGGACCTGGTTCTGGGGCTGCTGCTGGGCTTCTGTATCAGCTGGGTTCTGCTCTGGCTGGACAGAACCCTGCACCGGGTTCTGCGGGCTTGGAGAACCCACCCACAGAAAGACGTGTGGAGGTCGTGGAAGTGGGTGACGAGAATGTGTAACGTACAGGAGCTTCGCAGGCGGCTGCAGCAGCGCAGGAACAACAGCGGAGGGGACAACAACGTGGTACAcgtcaaacacaaacactaccACAACGGGCACCTGAGCCCACGCAGACtctaatccacacacacacacacacacacacacacacacactgcagcaggcATCTGGGCCTAGAAGCACTCTTTGACAATGGTCTCAAAGCAgctcgctctctcactcactcacacacacacacacacacacacacacacacagtactaatTGATGCTTCCCCTGAACTCACACTGACCTGATTCTCCAAGGATGTGACTGTATTTAACGCACAGCAGGACTGAAGTCCCTGaactcttgtg
>XM_034314265.1
ACAACATTTCACATAATAAACACTCGGTCAGGTcatttataatcacattaattCGTTAATTTTCGCTTCGGTtgatttaataaacacatttaaaatgtttgaacacTAAAAGTGTTCGCTTTTAGTTCAGTTTTTAGGTCACAAACCGCCTCGCGCACCGACCGTTAAAATTTAAacagatggggaaaaaaaacagtgacgcTGAGGTGATAGCGCGCTGTGTGGACATGAACGCGCTGCTCGATCGCTTCCACAATTACATCCTTCCTCATGTGCGAGGCCCGGAGCGGGTGTGTCACTGCACCTGtggcagACACCGGCTGCAGTACGTGATCCCGTACGAGGGTTCGAGCTCGCCAGACCGAGACCttccagcagggggcagcagtGTGACTAAGCAGGAAGTGGACCTGGTTCTGGGGCTGCTGCTGGGCTTCTGTATCAGCTGGGTTCTGCTCTGGCTGGACAGAACCCTGCACCGGGTTCTGCGGGCTTGGAGAACCCACCCACAGAAAGACGTGTGGAGGTCGTGGAAGTGGGTGACGAGAATGTGTAACGTACAGGAGCTTCGCAGGCGGCTGCAGCAGCGCAGGAACAACAGCGGAGGGGACAACAACGTGGTACAcgtcaaacacaaacactaccACAACGGGCACCTGAGCCCACGCAGACtctaatccacacacacacacacacacacacacacacacactgcagcaggcATCTGGGCCTAGAAGCACTCTTTGACAATGGTCTCAAAGCAgctcgctctctcactcactcacacacacacacacacacacacacacacacagtactaatTGATGCTTCCCCTGAACTCACACTGACCTGATTCTCCAAGGATGTGACTGTATTTAACGCACAGCAGGACTGAAGTCCCTGaactcttgtg

Function

symbol description
tmem240 Predicted to be integral component of membrane. Predicted to be active in synaptic membrane. Implicated in spinocerebellar ataxia type 21.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935707.2 True 1547 mRNA 0.53 4 762266 769955
XM_026935708.2 False 760 mRNA 0.55 4 764358 769955
XM_034314265.1 False 913 mRNA 0.51 4 764423 769955

Neighbor

gene id symbol gene type direction distance location
ssu72 ssu72,LOC107690546 coding upstream 1049 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 9650 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 21914 725540 ~ 740352 (+)
LOC113539512 LOC108281094 coding upstream 58906 699026 ~ 703360 (+)
nbl1 nbl1,LOC105897883 coding upstream 66151 687951 ~ 696115 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding downstream 16400 786355 ~ 793053 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 105438 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 114760 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 118417 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 136474 906429 ~ 926559 (+)
G299625 NA non-coding upstream 160153 601558 ~ 602113 (+)
G299618 NA non-coding upstream 196758 565276 ~ 565508 (+)
G299528 NA non-coding upstream 508034 251723 ~ 254232 (+)
G299522 NA non-coding upstream 525776 236076 ~ 236490 (+)
G299482 NA non-coding upstream 544857 209994 ~ 217409 (+)
G299679 NA non-coding downstream 38204 808159 ~ 809350 (+)
G299708 NA non-coding downstream 68408 838363 ~ 838915 (+)
G299695 NA non-coding downstream 75513 845468 ~ 847722 (+)
G299719 NA non-coding downstream 103280 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 171881 941836 ~ 943526 (+)
LOC117599902 NA other upstream 35344 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 241323 515540 ~ 520943 (+)
dram2b NA other upstream 402008 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 572949 165615 ~ 189317 (+)
LOC113539702 LOC108281106 other downstream 72898 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 93303 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 678487 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 726905 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1283128 2053083 ~ 2060641 (+)

Expression


Co-expression Network