bap1 (bap1)


Basic Information

Item Value
gene id bap1
gene name bap1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1362472 ~ 1372744 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935715.2
GACGCAATCAATAACTgacggatttttttttttgttgttgatctATTGTGTTTACTAGAAAGCTACAGTGATCGGCAGAAATAGTGAACGATTCCGAGCTCTCAGATTGTAAACACATCAACATGGATTTTTATCTGAATTAACTGGACTTTATTAAAgataataaacatgaataaaggCTGGCTGGAGCTGGAGAGCGACCCCGgtCTCTTCACACTGCTGGTGGAGGATTTTGGTGTAAAGGGTGTTCAGGTGGAGGAGATCTACGACCTGCAGAGTAAATGCCAGagTCCCGTGTACGGCTTCATCTTCCTGTTTAAATGGATCGAGGAGCGTCGCTCCAGGAGGAAAGTGTCCACGCTGGTGGACGAGACCTCGGTTATCGACGACGACATCGTTAACGACATGTTCTTCGCTCACCAGctgattCCAAACTCGTGTGCGACTCACGCCTTACTGAGCGTGCTCCTGAACTGCAGCGGGGTGGAGCTGGGCAGCACGCTGAGCCGCATGAAGGCCTTCACCAAGGGATTCAGTCcagagAGTAAAGGCTATGCCATCGGGAACGCTCCAGAGTTAGCAAAGGCGCACAACAGTCACGCCAGGCCCGAGCCACGGCACCTGCCGGAGAAACAGAACGGCATCAGCGCTGTGAGGACGATGGAGGCCTTCCACTTCGTCAGCTACGTCCCCATTAAAGAGCGACTGTTCGAGCTGGACGGCCTCAAAACCTACCCCATCGACCACGgtccttggggagaggaggaggagtggacAGACAAAGCTCGGCGGGTCATTATGGAGAGAATCGGCCTGGCGACTGCAGGTGAGCCGTACCACGACATCCGCTTCAACCTGATGGCTGTGGTTCCTGACCGCAGGGTGAAGTACGAGTCCAGGCTCGAGGTGCTCAAACGCAACCGACAGATCGTTCTGGAAGGACTGCAGCAGGCGATCAGAGCATCGCAAGCAGACACAACACAGGAGCGCAAGCAGCAAGACTCCTCCTCCGAGGACACGCCCCCTGCTGTAAAAAAGGAGGAAGGGTCAGATACACCAATAGGTCCTGCTCCAGCTCCgcccacagactcaGCAGACGTCGCAAGTGTTCCCGCAGTGTCCAGCTCCTCAGAGAAACCCAAAGCCACAGCGAAGCCCCCTACTCTGCCTCCAGGGGGCGCCACCACCGGCCCCAACCCCATCGTCCAGCGCCTGCCCGCCTTCCTGGACAACCACAACTACGCAAAGTCCCCCATGCTGgaggaggaggacctgGCTGCAGGAATGGCTCGTGCTCGTGCCCCTGGCCCCCCTCAGGCCCCGtactctgatgatgatgatgactatgaggatgaagaggaggaaagGTTCCGCAAAAAGTCAGGCGTCCGTGGACGGGGCGTGGCCCGGAGCAGCGGCGGGGGCGGAGTCTCAGGCGTGGAGGGCCAGCTGGCTCTGAGCATGCTCGCCGAGAGACTCAAAAAAGCCGAGAGAAAGGACACCATGGCAACGACGCCGACGCCCGGCTCCTCCACCCTGAACGTGCGCACGGAGGGCCGAACTGGGGGCATCAGCATCACGCCCGCCTGCCAGCCCTCGCCCACGCCCAGCAACGAGAGCACGGACACGGCCTCCGAGATCGGCAGCGCCTTCAACTCACCGCTGAGATCTCCCGCGCGCTCGCAGGCTGCCACTCGACCCTCCAGCCCCGTGGCCTGCCACCTGAGCCGCGTGCTGTTCGGAGACGATGACGTCCTGCTGAGACTGGACACTCGACACAACCGCGCCGTCCGAGAGCTCGGAGCCCTGATCAGCTCCACGCAGCTACAGCTCAGAGAGGATGGAACCATCTACACACTGCCAAGTAcagACGCGGCGTGTGATGTGGTGAAGAAGGCTGGCGGAGTGGACAGTAAGGAGCCGAGTGAGAGGACAGAGGGAGGAGGTGCGGGTGGAGAGGTGGATGGAGGGAAAGGAGGAGCGTCTCGGGAGCTGAAACAGGAAAAGGAGATCACGGAGATGAGCAAGGACAAGCCGAGCGCAGAGGCGCTGAACTTTGCCGAGCCCGAGGCGCTCACCAAACCGCTCGGGGAGAAATACACTCCTAAAGAGTTGTTGGCTCTGCTGAAGTTTGTGGAGGCCGATATCGCGAACTACGAGGTGTATCTGAAAGAGGAGGTGGAGAAACGGAAGAAATACAAGATTGATGACCAGAGGAGGACCCATAACTACGACGAGTTCATCTGCACCTTCATTTCCATGCTGGCACAAGAaggtatgctGGCGAGTTTGGTGGAGCAGAACATTTCCGTGCGCAGGCGCCAGGGTGTGAGCATCGGCCGCCTCCATAAACAACGCAAACCGGACCGAAGAAGGCGATCTCGGCCGTACAAAGCCAAGCGCCAGTGAACACGGCCGGACTCTCGAACACCAGCACTGGTGAATTCTCTTAGAAAGGTGCTGATAAACACTCTAACTTGTAAAGACAAGAACTAGTGAACAAATCAATACAACTAGGACCTCTGAACACAGCCTAGCTCAAACACATTTAGGCTTATGATAACttgctcagaaaaaaaa

Function

symbol description
bap1 Predicted to enable chromatin binding activity and thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be part of PR-DUB complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in basal cell carcinoma. Orthologous to human BAP1 (BRCA1 associated protein 1).

NR:

description
ubiquitin carboxyl-terminal hydrolase BAP1-like

GO: NA

KEGG:

id description
K08588 BAP1, UCHL2; ubiquitin carboxyl-terminal hydrolase BAP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935715.2 True 2580 mRNA 0.57 18 1362472 1372744

Neighbor

gene id symbol gene type direction distance location
LOC113539530 LOC108254765 coding upstream 18216 1340445 ~ 1344256 (+)
LOC117599924 NA coding upstream 47770 1313707 ~ 1314702 (+)
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding upstream 138183 1211519 ~ 1224289 (+)
LOC113539523 LOC108254796,LOC108443907,LOC108444093,LOC108444092,LOC108254798 coding upstream 172174 1179339 ~ 1190298 (+)
LOC113539522 LOC108444092,LOC108443907,LOC108254796,LOC108444093 coding upstream 187099 1164088 ~ 1175373 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding downstream 3735 1376479 ~ 1444625 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding downstream 235705 1608449 ~ 1620350 (+)
cacna1da cacna1da,LOC108281043 coding downstream 287464 1660208 ~ 1752294 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding downstream 388120 1760864 ~ 1812936 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding downstream 505859 1878603 ~ 1920454 (+)
G299833 rad54l2 non-coding upstream 5634 1356322 ~ 1356838 (+)
G299786 NA non-coding upstream 61068 1278848 ~ 1301404 (+)
G299773 hyal2 non-coding upstream 63563 1255066 ~ 1298909 (+)
G299787 NA non-coding upstream 89799 1272147 ~ 1272673 (+)
G299735 NA non-coding upstream 355519 965530 ~ 1006953 (+)
G299851 NA non-coding downstream 35758 1408502 ~ 1437257 (+)
LOC117599906 NA non-coding downstream 227949 1600693 ~ 1604586 (+)
G299862 NA non-coding downstream 248056 1620800 ~ 1622584 (+)
G299916 NA non-coding downstream 253349 1626093 ~ 1640428 (+)
G300447 NA non-coding downstream 447877 1820621 ~ 1822339 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 489716 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 517602 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 557374 758509 ~ 805098 (+)
LOC117599902 NA other upstream 635550 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 841529 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 75698 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 124116 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 680339 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 768778 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1342918 2715662 ~ 2723581 (+)

Expression


Co-expression Network