LOC113539749


Basic Information

Item Value
gene id LOC113539749
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 5506993 ~ 5510940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935774.2
taagaaaaagaagaaaaggaaggaggAGAAgctgaagcagcagcagcaggaggaggacgACGAGAAGCTACCGGCCCAGCGGTTGTAGTGGAAAGTTCCAGCaataatttgaaaatacaaGAAAACAGCAATCATAAAGAACAGCAGAAGCGTGCACTTTTCGTTTCGTCATtcgggaagtgtttaatatctgttGGAGGATATTAACACGCGCACTAACAGACTAAATCCGCAGACAAGCAGCAGGTAAACCCGCCGCTCATTTCTCACAGGAGGACAGAAAACACTGACATATAGCACGCTTTCAGTAAGACTGTCAACGCTGTTATATTTTTGGCAGGTTAATTGTGCAAGAACGTATTCTTGACcaatatgaagctcacaggtgTCCTCCTGATGGTTTGTCTGTCAGTGGTGCAGCCCCAGACTTTTCCCGACATATCAGCCATAGTGAATGAACCTGTGACTCTACCATGTACCTGCTCTGGGCAAAAGGTCAAGTGGAGCATCTTCCATCCCAGACTTACCAAATCTTTCATTGCTTCGTGCCACCATGAGACGTGTCAGATTGATCAGCATTTTCAGAAAAGATTTTCAGTCTTGGTCGATACCAGCAGAGGAAATTTCTCCATGAGCATCAGTTCAGCTCTCTACAACGACTTTGGCTTCTACAGGTGCACCTGTAATGGAAAATCAGTTAGCGAAGTAAAACTAAAGGTTTATGACCCTAGGATTGTGATGGTTTTTGAGGGGGATAACGTCACCCTTCCATGCTACGGAGACACTCGGCGTGACGCCAAGGATGTACAGTggaagaaagatggaaaaaagttGCTGGAGTACCTTTATGGAAGTACCAATGCCTCAGCAGGCAGATTTATGATGTCAGAAGAAGGCTTTCTAGATGGCGATCTGTCACTCAACATCAGTAAGGTTCACCTGTCTGATGCTGGATTTTATCTGTGCCTTATTCAGGGTGAATCTCGTGATGGAGACCCACGTGCTGTTCTACTAAAGGTGGAAGAACGCCAACCAGAGCACCAACCACCCACACCTCCCAACAGCTACAAACAACTAGCAGTAGGAATAACACTAGGACTGCTCCTCGGAGGCATCATCGGAGCAATTATTTACTGTGGGAGAAGATTCACACAACCTCAAGATACGACATCCACCAATATAGGAGCTCCTGTTCAAGAGGAATTCCAAATGCTCCCAAAGCCTTCTTCGACACTGCCAATCCAGGACTAGTTCATAGTTAACAAAGACCTGTCCCACTGCTTTGGAAAATTTTCTTATGAAGGGAAGCAAAAGTTGAAAAGCAAAATGTAGAAAGCCAATTTAGAAATTCAGCAAAGCTGTAGGAGCGGCATGGTGGTGCTTTTAGCATccttgtctgtgtgtggttctgCTTGTTCTGGTGTGCTGATACTCCGGCTTTATTTCAATCATTTTTGCGGttcaaatgaaaagaaatgtgaAATCAGAAAGAGCCAGTTTTATATGCAGTATGTGTATCAGCTATAAAtgctttacatttcatttttatacatgttatatatattCGGTCTTTGTTGATTAGATGTTTGCTAACTTATAGAACAGCCCTTAAGGCTGTTCTGACTTATCAAGCTGTATCTTTTTTTGAACTGATCGAACTTATGTTTTTATTGTAGCGCACAATCAAAAATCCCAAAAACTGAAAGGTGGGGTAGTGTTTACAATTTTTGGGTCTCtcaataatactaataatactaataatactaataataataagaagaagatgaagaagaagaagaagtagctTACTCATAATTATGAAGTAGCCAACATAATTATCAGCTTATGTAGCTGTTATGACCttgggtgggaaaaa
>XM_026935775.2
taagaaaaagaagaaaaggaaggaggAGAAgctgaagcagcagcagcaggaggaggacgACGAGAAGCTACCGGCCCAGCGGTTGTAGTGGAAAGTTCCAGCaataatttgaaaatacaaGAAAACAGCAATCATAAAGAACAGCAGAAGCGTGCACTTTTCGTTTCGTCATtcgggaagtgtttaatatctgttGGAGGATATTAACACGCGCACTAACAGACTAAATCCGCAGACAAGCAGCAGGTTAATTGTGCAAGAACGTATTCTTGACcaatatgaagctcacaggtgTCCTCCTGATGGTTTGTCTGTCAGTGGTGCAGCCCCAGACTTTTCCCGACATATCAGCCATAGTGAATGAACCTGTGACTCTACCATGTACCTGCTCTGGGCAAAAGGTCAAGTGGAGCATCTTCCATCCCAGACTTACCAAATCTTTCATTGCTTCGTGCCACCATGAGACGTGTCAGATTGATCAGCATTTTCAGAAAAGATTTTCAGTCTTGGTCGATACCAGCAGAGGAAATTTCTCCATGAGCATCAGTTCAGCTCTCTACAACGACTTTGGCTTCTACAGGTGCACCTGTAATGGAAAATCAGTTAGCGAAGTAAAACTAAAGGTTTATGACCCTAGGATTGTGATGGTTTTTGAGGGGGATAACGTCACCCTTCCATGCTACGGAGACACTCGGCGTGACGCCAAGGATGTACAGTggaagaaagatggaaaaaagttGCTGGAGTACCTTTATGGAAGTACCAATGCCTCAGCAGGCAGATTTATGATGTCAGAAGAAGGCTTTCTAGATGGCGATCTGTCACTCAACATCAGTAAGGTTCACCTGTCTGATGCTGGATTTTATCTGTGCCTTATTCAGGGTGAATCTCGTGATGGAGACCCACGTGCTGTTCTACTAAAGGTGGAAGAACGCCAACCAGAGCACCAACCACCCACACCTCCCAACAGCTACAAACAACTAGCAGTAGGAATAACACTAGGACTGCTCCTCGGAGGCATCATCGGAGCAATTATTTACTGTGGGAGAAGATTCACACAACCTCAAGATACGACATCCACCAATATAGGAGCTCCTGTTCAAGAGGAATTCCAAATGCTCCCAAAGCCTTCTTCGACACTGCCAATCCAGGACTAGTTCATAGTTAACAAAGACCTGTCCCACTGCTTTGGAAAATTTTCTTATGAAGGGAAGCAAAAGTTGAAAAGCAAAATGTAGAAAGCCAATTTAGAAATTCAGCAAAGCTGTAGGAGCGGCATGGTGGTGCTTTTAGCATccttgtctgtgtgtggttctgCTTGTTCTGGTGTGCTGATACTCCGGCTTTATTTCAATCATTTTTGCGGttcaaatgaaaagaaatgtgaAATCAGAAAGAGCCAGTTTTATATGCAGTATGTGTATCAGCTATAAAtgctttacatttcatttttatacatgttatatatattCGGTCTTTGTTGATTAGATGTTTGCTAACTTATAGAACAGCCCTTAAGGCTGTTCTGACTTATCAAGCTGTATCTTTTTTTGAACTGATCGAACTTATGTTTTTATTGTAGCGCACAATCAAAAATCCCAAAAACTGAAAGGTGGGGTAGTGTTTACAATTTTTGGGTCTCtcaataatactaataatactaataatactaataataataagaagaagatgaagaagaagaagaagtagctTACTCATAATTATGAAGTAGCCAACATAATTATCAGCTTATGTAGCTGTTATGACCttgggtgggaaaaa

Function

GO:

id name namespace
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935774.2 True 1876 mRNA 0.42 5 5506993 5510940
XM_026935775.2 False 1782 mRNA 0.42 5 5506993 5510940

Neighbor

gene id symbol gene type direction distance location
cse1l cse1l,LOC107750990,LOC107699361 coding upstream 20481 5473890 ~ 5486512 (+)
camk1b LOC108435972,LOC108254900,LOC107714490,LOC107566450,LOC107680448 coding upstream 766144 4695159 ~ 4740849 (+)
spcs1 spcs1 coding upstream 823442 4681030 ~ 4683551 (+)
gnl3 gnl3 coding upstream 833306 4666876 ~ 4673687 (+)
sfmbt1 sfmbt1 coding upstream 1057616 4432525 ~ 4449377 (+)
LOC113539468 NA coding downstream 3768 5514708 ~ 5517420 (+)
bmp7a bmp7,LOC108435091 coding downstream 9182 5520122 ~ 5544024 (+)
si:ch211-253b8.5 LOC108254983 coding downstream 46628 5557568 ~ 5577596 (+)
taf4a taf4,taf4a,LOC108436032 coding downstream 71576 5582516 ~ 5598239 (+)
LOC113539544 NA coding downstream 556114 6067054 ~ 6071054 (+)
G302530 NA non-coding upstream 289568 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 628618 4837152 ~ 4878375 (+)
G302360 NA non-coding upstream 686094 4820692 ~ 4820899 (+)
G302281 NA non-coding upstream 773932 4732153 ~ 4733061 (+)
G301923 NA non-coding upstream 1211477 4295308 ~ 4295516 (+)
G302575 NA non-coding downstream 11594 5522534 ~ 5565014 (+)
G302586 NA non-coding downstream 49673 5560613 ~ 5561524 (+)
G302585 NA non-coding downstream 66693 5577633 ~ 5580979 (+)
G303181 NA non-coding downstream 839252 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 1124917 6635857 ~ 6659338 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 35432 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1037797 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1228320 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 1593907 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 2783412 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 689506 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 987120 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 1153028 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 2463651 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2970155 8481095 ~ 8561702 (+)

Expression


Co-expression Network